mRNA_Ecto-sp13_S_contig16078.4445.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16078.4445.1
Unique NamemRNA_Ecto-sp13_S_contig16078.4445.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16078.4445.1 vs. uniprot
Match: D8LB94_ECTSI (Similar to AHNAK nucleoprotein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB94_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 4.800e-35
Identity = 75/82 (91.46%), Postives = 77/82 (93.90%), Query Frame = 1 
Query:    1 TSLTAGLAAGGAAAVSAIGAAVGLSGDKPDAELPSGDLDASASVPDASVDVKKPKKGLFGGLFGSKAKIEVPDANVSVPDVS 246
            TSL AGLAAGG AAV AIGAAVGLSGDKPDAELPSGDLDAS SVPDASVDVKKPKKGLFGGLFGSKAKIEVPDA+VS PDV+
Sbjct: 1487 TSLAAGLAAGGVAAVGAIGAAVGLSGDKPDAELPSGDLDASVSVPDASVDVKKPKKGLFGGLFGSKAKIEVPDADVSAPDVT 1568
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BLAST of mRNA_Ecto-sp13_S_contig16078.4445.1 vs. uniprot
Match: A0A6H5K9M1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9M1_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 5.270e-31
Identity = 76/96 (79.17%), Postives = 78/96 (81.25%), Query Frame = 1 
Query:    1 TSLTAGLAAGGAAAVSAIGAAVGLSGDKPDAELPSGDLDASASVPDA-SVDVKKPKKGLFGGLFGSKAKIE------------VPDANVSVPDVSA 249
            TSLTAGLAAGG AAV AIGAAVGLSGDKPDAELPSGD+DAS SVPD  SVDVKKPKKGLFGGLFGSKAKIE            VPDA+VSVPD SA
Sbjct: 2403 TSLTAGLAAGGVAAVGAIGAAVGLSGDKPDAELPSGDVDASVSVPDVPSVDVKKPKKGLFGGLFGSKAKIEASSSLKRRRARRVPDADVSVPDASA 2498
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BLAST of mRNA_Ecto-sp13_S_contig16078.4445.1 vs. uniprot
Match: A0A6H5JY67_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY67_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 6.130e-16
Identity = 46/62 (74.19%), Postives = 53/62 (85.48%), Query Frame = 1 
Query:    1 TSLTAGLAAGGAAAVSAIGAAVGLSGDKPDAELPSGDLDASASVPDASVDVKKPKKGLFGGL 186
            TSLTAGLAA G A V AIGAAVGLSGDKPDAE+PSG +  S S+P+ASVD++KP+K LFGGL
Sbjct:  759 TSLTAGLAASGVAIVGAIGAAVGLSGDKPDAEVPSGVVHVSLSIPEASVDIRKPRKVLFGGL 820
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16078.4445.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LB94_ECTSI4.800e-3591.46Similar to AHNAK nucleoprotein n=1 Tax=Ectocarpus ... [more]
A0A6H5K9M1_9PHAE5.270e-3179.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JY67_9PHAE6.130e-1674.19Protein kinase domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16078contigEcto-sp13_S_contig16078:2752..3994 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score139.0
Seed ortholog evalue1.6e-30
Seed eggNOG ortholog2880.D8LB94
Model size405
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.axon ensheathment
EggNOG OGs28M73@1,2QTQ3@2759
Cds size402
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462849.0596738-CDS-Ecto-sp13_S_contig16078:2753..29451681462849.0596738-CDS-Ecto-sp13_S_contig16078:2753..2945Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16078 2754..2945 -
1681462849.0761237-CDS-Ecto-sp13_S_contig16078:3330..34441681462849.0761237-CDS-Ecto-sp13_S_contig16078:3330..3444Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16078 3331..3444 -
1681462849.086678-CDS-Ecto-sp13_S_contig16078:3898..39941681462849.086678-CDS-Ecto-sp13_S_contig16078:3898..3994Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16078 3899..3994 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16078.4445.1prot_Ecto-sp13_S_contig16078.4445.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16078 2754..3994 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16078.4445.1

>prot_Ecto-sp13_S_contig16078.4445.1 ID=prot_Ecto-sp13_S_contig16078.4445.1|Name=mRNA_Ecto-sp13_S_contig16078.4445.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=134bp
TSLTAGLAAGGAAAVSAIGAAVGLSGDKPDAELPSGDLDASASVPDASVD
VKKPKKGLFGGLFGSKAKIEVPDANVSVPDVSADVSAPDVSGTMPDISGN
VSVPGISGDVSGPDVSGDMSVPDVSGSLNVPDVS
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mRNA from alignment at Ecto-sp13_S_contig16078:2752..3994-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16078.4445.1 ID=mRNA_Ecto-sp13_S_contig16078.4445.1|Name=mRNA_Ecto-sp13_S_contig16078.4445.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1243bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16078:2752..3994- (Ectocarpus species13 EcNAP12_S_4_19m)
ACGTCGCTGACGGCTGGCCTGGCGGCCGGTGGTGCGGCAGCTGTGAGCGC
GATCGGCGCGGCGGTTGGTCTGTCGGGCGACAAGCCGGACGCTGAGGTGC
GTTTGGATGAATTCTTTTTTGTAGTACCAAATGTCATCGGTGGGTGCCTC
GTGGCGTGTAACTGGACGGTGCTGCAGCTTCTGTTCGTGTCATCTTCGTA
GAACCATGACGTCCGGTGGAGCGCTTGCTCCTATGCTCTTAGTTTCGGGG
TGGGTTACTGATTTCTGATGTTGCTTGGCCGATGTCGGAATCGATGTTTA
TAGATTATACGTTGGCATAGTCCCAGCCTGTGTCTGCAAGAGGATAGTTG
GTACGGCAGGCGGCGACATGGTTTGAATGGTTGGGTGACACAGCCACCTG
TTGTGCATTTCGTCGGTATTACTTGCCACTGCAACTGCTTGTCATTCAGT
TTCCGATCGTCCGCTTTTCGGTTTAAACGATGTGCGTGGTTGGAATGCGA
TGACGTGAGTGTTGTGCACGAATACTCCCCCGTCTTGTATCGAATGGCAG
CTTCCCTCTGGAGACTTGGATGCCAGTGCTTCCGTCCCTGATGCGTCGGT
GGACGTCAAGAAGCCCAAAAAGGGTCTGTTCGGTGGCCTCTTCGGCTCCA
AGGCCAAGATAGAGGTAAGCGTCGTCTGTTCAAGAGGTTTTTTATGCCGC
CTGGCGGCGAGGTTGCCTCGTTTGTGCATCAGCATTGCTGTTTTGCCACA
GAAACAAATCCACCGAGACTCCGGGGTGTCTAGTTCGCCCGGGCAGGAAG
GTCGCCGTCAGCTTGTTGGCCCTTCACGGTGCAGTCCATCCGTGACACCC
AAAACGCAACTTTAATCCTTCTCAACGCCCGGGCCGTAGCCAACACCAAT
CGGAAACGATTCAAAAGCGCCTTCTCGCCATTTTCGATTTTTCACATCAC
GACAAGCTCGTGCTCCTCTAGCCATTTTTCGTCGTGAACCAAGTTTATTT
TGGAACGCCGTTTTGGCTTTGTGCGGTGATCTTGTTGACTTGCCTGCAGG
TCCCGGATGCCAACGTGTCCGTGCCAGATGTTTCTGCCGACGTGTCCGCG
CCGGACGTGAGCGGCACGATGCCGGATATCAGCGGGAACGTGTCCGTGCC
CGGCATCAGTGGAGATGTTTCTGGGCCCGACGTCAGCGGCGATATGTCCG
TGCCGGACGTTTCTGGCTCGCTTAACGTGCCTGATGTGAGCGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16078:2752..3994-

>mRNA_Ecto-sp13_S_contig16078.4445.1 ID=mRNA_Ecto-sp13_S_contig16078.4445.1|Name=mRNA_Ecto-sp13_S_contig16078.4445.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=402bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16078:2752..3994- (Ectocarpus species13 EcNAP12_S_4_19m)
ACGTCGCTGACGGCTGGCCTGGCGGCCGGTGGTGCGGCAGCTGTGAGCGC
GATCGGCGCGGCGGTTGGTCTGTCGGGCGACAAGCCGGACGCTGAGCTTC
CCTCTGGAGACTTGGATGCCAGTGCTTCCGTCCCTGATGCGTCGGTGGAC
GTCAAGAAGCCCAAAAAGGGTCTGTTCGGTGGCCTCTTCGGCTCCAAGGC
CAAGATAGAGGTCCCGGATGCCAACGTGTCCGTGCCAGATGTTTCTGCCG
ACGTGTCCGCGCCGGACGTGAGCGGCACGATGCCGGATATCAGCGGGAAC
GTGTCCGTGCCCGGCATCAGTGGAGATGTTTCTGGGCCCGACGTCAGCGG
CGATATGTCCGTGCCGGACGTTTCTGGCTCGCTTAACGTGCCTGATGTGA
GC
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