mRNA_Ecto-sp13_S_contig16078.4444.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16078.4444.1
Unique NamemRNA_Ecto-sp13_S_contig16078.4444.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig16078.4444.1 vs. uniprot
Match: D8LB94_ECTSI (Similar to AHNAK nucleoprotein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB94_ECTSI)

HSP 1 Score: 184 bits (466), Expect = 1.730e-50
Identity = 143/171 (83.63%), Postives = 150/171 (87.72%), Query Frame = 1 
Query:    4 AAVGAIGAAVGLSGDKPDVEVDASMPSVGDVSADVDVKVDDVDAKAPSSEVLKPKKGLFGLSFKKLSGKKLKVPDADAAVPDISGDVSVPDASVDVSXXXIDAKXXXXXXXXXXXXVIGPXXXXXXXXXXXXXXXXXXXXXVSGVEVPQVPRPSGEISGSAPELPSVDTSV 516
            AAVGAIGAAVGLSGDKPD EVDA MPSVGDVSAD+DVK+DDVDAKAPSSE+LKP+KGLFGLSFKKLSGKKLKVPDAD AVPD+SG            XXXIDAK XXXXXXXXXXX    XXXXXXXXXXXXXXXXXXXXX SGVEVP++PRPSGEISGSAPELPSVDTSV
Sbjct: 1726 AAVGAIGAAVGLSGDKPDAEVDAVMPSVGDVSADIDVKMDDVDAKAPSSEILKPRKGLFGLSFKKLSGKKLKVPDADVAVPDVSGXXXXXXXXXXXXXXXIDAKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGVEVPELPRPSGEISGSAPELPSVDTSV 1896
[Close]
BLAST of mRNA_Ecto-sp13_S_contig16078.4444.1 vs. uniprot
Match: A0A6H5K9M1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9M1_9PHAE)

HSP 1 Score: 155 bits (392), Expect = 1.540e-40
Identity = 120/170 (70.59%), Postives = 127/170 (74.71%), Query Frame = 1 
Query:    4 AAVGAIGAAVGLSGDKPDVEVDASMPSVGDVSADVDVKVDDVDAKAPSSEVLKPKKGLFGLSFKKLSGKKLKVPDADAAVPDISGDVSVPDASVDVSXXXIDAKXXXXXXXXXXXXVIGPXXXXXXXXXXXXXXXXXXXXXVSGVEVPQVPRPSGEISGSAPELPSVDTS 513
            AAVGAIGAAVGLSGDKPD EVDASMPSVGDV  DV VK D+VDAK+ S E  K KKGLFGLSFKKLSGKKLKVPD D AVPD+S             XX +DAK                XXXXXXXXXXXXXXXXXXXXX+SGVEVP++PRPSGE SGSAPELPSVDTS
Sbjct: 1350 AAVGAIGAAVGLSGDKPDAEVDASMPSVGDVLGDVGVKGDNVDAKSSSLEPFKLKKGLFGLSFKKLSGKKLKVPDGDVAVPDVSXXXXXXXXXXXXXXXDVDAKLPEVSGGLSTPDXGXXXXXXXXXXXXXXXXXXXXXXXLSGVEVPELPRPSGETSGSAPELPSVDTS 1519
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16078.4444.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LB94_ECTSI1.730e-5083.63Similar to AHNAK nucleoprotein n=1 Tax=Ectocarpus ... [more]
A0A6H5K9M1_9PHAE1.540e-4070.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16078contigEcto-sp13_S_contig16078:1143..2468 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score188.0
Seed ortholog evalue3.9e-45
Seed eggNOG ortholog2880.D8LB94
Model size528
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.axon ensheathment
EggNOG OGs28M73@1,2QTQ3@2759
Cds size528
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462848.9850004-CDS-Ecto-sp13_S_contig16078:1142..12371681462848.9850004-CDS-Ecto-sp13_S_contig16078:1142..1237Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16078 1143..1237 -
1681462849.0006354-CDS-Ecto-sp13_S_contig16078:1766..19801681462849.0006354-CDS-Ecto-sp13_S_contig16078:1766..1980Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16078 1767..1980 -
1681462849.0243695-CDS-Ecto-sp13_S_contig16078:2249..24681681462849.0243695-CDS-Ecto-sp13_S_contig16078:2249..2468Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16078 2250..2468 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16078.4444.1prot_Ecto-sp13_S_contig16078.4444.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16078 1143..2468 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16078.4444.1

>prot_Ecto-sp13_S_contig16078.4444.1 ID=prot_Ecto-sp13_S_contig16078.4444.1|Name=mRNA_Ecto-sp13_S_contig16078.4444.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=176bp
AAAVGAIGAAVGLSGDKPDVEVDASMPSVGDVSADVDVKVDDVDAKAPSS
EVLKPKKGLFGLSFKKLSGKKLKVPDADAAVPDISGDVSVPDASVDVSVP
DIDAKLPEVSGELSAPDVIGPSISGDTSAAAPSIDAKIPSVDVSGVEVPQ
VPRPSGEISGSAPELPSVDTSVPSVA
back to top

mRNA from alignment at Ecto-sp13_S_contig16078:1143..2468-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16078.4444.1 ID=mRNA_Ecto-sp13_S_contig16078.4444.1|Name=mRNA_Ecto-sp13_S_contig16078.4444.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1326bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16078:1143..2468- (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGCGGCTGTGGGTGCGATCGGCGCGGCGGTTGGTCTGTCGGGCGACAA
GCCTGACGTGGAAGTGGACGCATCCATGCCCTCAGTTGGCGACGTCTCGG
CGGACGTTGATGTGAAGGTGGACGATGTCGACGCGAAGGCGCCTTCCTCG
GAGGTCTTGAAGCCCAAGAAGGGTCTGTTCGGGCTATCCTTCAAGAAACT
CTCCGGGAAAAAGCTCAAGGTTAGTTTTGACGTTTTTTTGGTCGCGAAGT
TGTGTGATTGCAGGGGAAGTCTGAACCCGAGACCGCCTGTTTGGTCTCAG
ACCCGCCCGGCTTTTTGCGGCGATCTTACGCTGACGGCCTCCGGCAATCA
TGACACATTCCTGTTCCCTGTGCGAGGCCATCAATGCCCATTGTCGCTCC
ATGTTGCGTCGCTCTATGTTGCCCATATGCAAGCATGTGGCCTGTTCGTG
AACGCGCAACTCAAAACGCTTTGTCAACTCTTCCACAGGTCCCGGATGCC
GATGCCGCAGTGCCTGATATTTCTGGAGATGTGTCGGTGCCGGACGCTTC
CGTGGACGTGTCTGTGCCGGACATTGACGCCAAGCTGCCCGAGGTTTCCG
GCGAACTGTCGGCGCCTGACGTTATCGGGCCCTCGATCAGCGGAGACACC
TCTGCCGCGGCTCCGTCGATCGACGCCAAGATTCCGTCGGTCGACGTGTC
GGGTAAGTTATGTTTCCGGGAGGGATTGGAACCCAGAAGGGTGCAGTGTT
TTGCCGTCCTGTTGGGTGAAGCTGACCGACGGAAGGGGAGGACATGTGGC
ATGATTCCGGCGTGGCCTTCGGGCCCACGCATGGTGAACCTGCCACTTTT
TATTTGCTGGCGGTGACGGTGTCCCTTCCTTTTTTTGGGGGGGGGTGGGG
TAGAAAGCATGAAAACATTGTGGGGCATGCTCTCGAGCCTCGCACATTTC
CATTCAGAATGAAAGAACGGGCTAAGCACCGCCAACAAGGCAAGGTTGCT
TATCTTCCTGACTGTACTCGCGAAAGGATACTGCGCTGTCTGTGTCCCAC
CGATCCTGCTGTTTTTCGGCGGTCACTCACACGTTGCCTGTTGACGGCTA
GGGCACACTATTTGTCATGACGATGCTACACTCGATTTTGCTATCAGGGA
CCTTTCATCGAAACTATGTACAAGATCGCCCTTCGTCACCTTCCCGCACA
ATCCGTCTGCAAATCCTTACCGTTGTTGTAGGCGTCGAGGTTCCTCAAGT
ACCTCGCCCTAGCGGGGAAATTTCCGGCTCTGCGCCGGAGTTGCCGTCTG
TTGACACGAGTGTGCCGTCGGTTGCG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16078:1143..2468-

>mRNA_Ecto-sp13_S_contig16078.4444.1 ID=mRNA_Ecto-sp13_S_contig16078.4444.1|Name=mRNA_Ecto-sp13_S_contig16078.4444.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=528bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16078:1143..2468- (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGCGGCTGTGGGTGCGATCGGCGCGGCGGTTGGTCTGTCGGGCGACAA
GCCTGACGTGGAAGTGGACGCATCCATGCCCTCAGTTGGCGACGTCTCGG
CGGACGTTGATGTGAAGGTGGACGATGTCGACGCGAAGGCGCCTTCCTCG
GAGGTCTTGAAGCCCAAGAAGGGTCTGTTCGGGCTATCCTTCAAGAAACT
CTCCGGGAAAAAGCTCAAGGTCCCGGATGCCGATGCCGCAGTGCCTGATA
TTTCTGGAGATGTGTCGGTGCCGGACGCTTCCGTGGACGTGTCTGTGCCG
GACATTGACGCCAAGCTGCCCGAGGTTTCCGGCGAACTGTCGGCGCCTGA
CGTTATCGGGCCCTCGATCAGCGGAGACACCTCTGCCGCGGCTCCGTCGA
TCGACGCCAAGATTCCGTCGGTCGACGTGTCGGGCGTCGAGGTTCCTCAA
GTACCTCGCCCTAGCGGGGAAATTTCCGGCTCTGCGCCGGAGTTGCCGTC
TGTTGACACGAGTGTGCCGTCGGTTGCG
back to top