prot_Ecto-sp13_S_contig16077.4443.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig16077.4443.1
Unique Nameprot_Ecto-sp13_S_contig16077.4443.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length254
Homology
BLAST of mRNA_Ecto-sp13_S_contig16077.4443.1 vs. uniprot
Match: D8LAU4_ECTSI (Mediator of RNA polymerase II transcription subunit 7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAU4_ECTSI)

HSP 1 Score: 363 bits (932), Expect = 1.760e-125
Identity = 195/203 (96.06%), Postives = 199/203 (98.03%), Query Frame = 0
Query:   51 MFGMPYSSEPVEQELLPPEKIVVPASGQAIDFRAELKGLLNSIMANYGQFMEMLVSSPARAHEKLSDVETLFVNFHSLLNRYRAHQARHIVLERLRSQAQENDAVMSALEAAMHQCTSAQEGAFSCLGLEENGASGVVEGEGERAPQGRVEMDVDETVGGAATPAVGEGGVAGEGVAASEFGKAGKGKLRAVLAPAIESGNPR 253
            MFGMPYSSEPVEQELLPPEKIVVPASGQAIDFRAELKGLLNSIMANYGQFMEMLVSSPARAHEKLSDVETLFVNFHSLLNRYRAHQARHIVLERLRSQA+ENDAVMSALEAAMHQCTSAQEGAFSCLGL+ENGASGV EGEGERA QGRVEMDVDET+GGAAT AVGEGGVAGEGVAASEFGKAGKGKL AVLAPA+ESGNPR
Sbjct:    1 MFGMPYSSEPVEQELLPPEKIVVPASGQAIDFRAELKGLLNSIMANYGQFMEMLVSSPARAHEKLSDVETLFVNFHSLLNRYRAHQARHIVLERLRSQAKENDAVMSALEAAMHQCTSAQEGAFSCLGLQENGASGVAEGEGERARQGRVEMDVDETIGGAATTAVGEGGVAGEGVAASEFGKAGKGKLGAVLAPAVESGNPR 203          
BLAST of mRNA_Ecto-sp13_S_contig16077.4443.1 vs. uniprot
Match: A0A6H5JU59_9PHAE (Mediator of RNA polymerase II transcription subunit 7 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU59_9PHAE)

HSP 1 Score: 361 bits (926), Expect = 3.520e-123
Identity = 196/216 (90.74%), Postives = 205/216 (94.91%), Query Frame = 0
Query:    2 GASLTGQEVGASAATTAAPGDSAGGAGGTALDDFPIQPPRPPGPGETYRMFGMPYSSEPVEQELLPPEKIVVPASGQAIDFRAELKGLLNSIMANYGQFMEMLVSSPARAHEKLSDVETLFVNFHSLLNRYRAHQARHIVLERLRSQAQENDAVMSALEAAMHQCTSAQEGAFSCLGLEENGASGVVEGEGERAPQGRVEMDVDETVGGAATPAVG 217
            GASLTGQ+VGASAA  AAPGDSAGGAGGTA ++FP+QPPRPPGPGETYRMFGMPYSSEPVEQELLPPEKIVVPASGQAIDFRA LKGLLNSIMANYGQFMEMLVSSPARAHEKLSDVETLFVNFHSLLNRYRAHQARHIVLERLRSQA+ENDAVMS LEAAMHQCTSAQE AFSCLGL+E+GAS V EGE ERA QGRVEMD+DET+GGAAT AVG
Sbjct:   25 GASLTGQDVGASAAI-AAPGDSAGGAGGTAPNEFPLQPPRPPGPGETYRMFGMPYSSEPVEQELLPPEKIVVPASGQAIDFRAGLKGLLNSIMANYGQFMEMLVSSPARAHEKLSDVETLFVNFHSLLNRYRAHQARHIVLERLRSQAEENDAVMSTLEAAMHQCTSAQESAFSCLGLQEHGASCVAEGERERAQQGRVEMDIDETIGGAATTAVG 239          
BLAST of mRNA_Ecto-sp13_S_contig16077.4443.1 vs. uniprot
Match: A0A6U1QAX8_9STRA (Mediator of RNA polymerase II transcription subunit 7 n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1QAX8_9STRA)

HSP 1 Score: 101 bits (252), Expect = 3.770e-23
Identity = 58/142 (40.85%), Postives = 87/142 (61.27%), Query Frame = 0
Query:   32 LDDFPIQPPRPPGPGETYRMFGMPYSSEPVEQELLPPEKIVVPASGQAI-DFRAELKGLLNSIMANYGQFMEMLVSSPARAHEKLSDVETLFVNFHSLLNRYRAHQARHIVLERLRSQAQENDAVMSALEAAMHQCTSAQEG 172
             +D   Q  RPP P  +Y  FG+PYS+E     L+P EK + P       +FR+E++ LL SIMANY Q +++L+  P++   K+ ++E LFVNFHS+LN++R HQAR +VL RL+ Q ++    ++ LE+ M       EG
Sbjct:   21 FEDENFQLKRPPVPEGSYASFGIPYSAEAFIPTLVPDEKKLGPKQDDLDRNFRSEMQKLLQSIMANYVQLLDILIECPSQQSRKVEELEQLFVNFHSILNQFRQHQAREMVLVRLKRQKKDEQKALAMLESQMEAVRQVVEG 162          
BLAST of mRNA_Ecto-sp13_S_contig16077.4443.1 vs. uniprot
Match: H3GJZ4_PHYRM (Mediator of RNA polymerase II transcription subunit 7 n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GJZ4_PHYRM)

HSP 1 Score: 100 bits (250), Expect = 4.360e-21
Identity = 52/118 (44.07%), Postives = 80/118 (67.80%), Query Frame = 0
Query:   40 PRPPGPGE-TYRMFGMPYSSEPVEQELLPPEKIVVPASGQA-----IDFRAELKGLLNSIMANYGQFMEMLVSSPARAHEKLSDVETLFVNFHSLLNRYRAHQARHIVLERLRSQAQE 151
            P PP P E TY MFG PYS++ V  +LLP +K+  PA  +      +D++AE+K +  S++AN+ + +++L+  PA  +EKL DVE LF+N H+L+N +R HQAR  V++ L++Q QE
Sbjct:  174 PAPPEPMEPTYHMFGSPYSTQDVVPDLLPGKKLYAPAGEEGDEDAPVDYKAEMKKINRSLLANFVELVDVLIKKPAMFNEKLDDVELLFLNMHNLINSFRPHQARETVIQMLKTQVQE 291          
BLAST of mRNA_Ecto-sp13_S_contig16077.4443.1 vs. uniprot
Match: A0A329SFW2_9STRA (Mediator of RNA polymerase II transcription subunit 7 n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SFW2_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 2.480e-20
Identity = 52/119 (43.70%), Postives = 79/119 (66.39%), Query Frame = 0
Query:   40 PRPPGPGE-TYRMFGMPYSSEPVEQELLPP--EKIVVP----ASGQAIDFRAELKGLLNSIMANYGQFMEMLVSSPARAHEKLSDVETLFVNFHSLLNRYRAHQARHIVLERLRSQAQE 151
            P PP P E TY MFG PYS++ V  +LLP   +K+  P      G  +D++AE+K +  S++AN+ + +++L+  PA  +EKL DVE LF+N H+L+N +R HQAR  V++ L++Q QE
Sbjct:   34 PAPPEPMEPTYHMFGSPYSTQDVVPDLLPQPGKKLYAPQGEDGGGAPVDYKAEMKKINRSLLANFVELVDVLIKKPAMFNEKLDDVELLFLNMHNLINAFRPHQARETVIQMLKTQVQE 152          
BLAST of mRNA_Ecto-sp13_S_contig16077.4443.1 vs. uniprot
Match: A0A6A3XWY7_9STRA (Mediator of RNA polymerase II transcription subunit 7 n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3XWY7_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 9.010e-20
Identity = 50/119 (42.02%), Postives = 80/119 (67.23%), Query Frame = 0
Query:   40 PRPPGPGE-TYRMFGMPYSSEPVEQELLPP--EKIVVPASGQ----AIDFRAELKGLLNSIMANYGQFMEMLVSSPARAHEKLSDVETLFVNFHSLLNRYRAHQARHIVLERLRSQAQE 151
            P PP P E TY MFG PYS++ V  +LLP   +K+  P   +    A+D++A++K +  S++AN+ + +++L+  PA  +EKL D+E LF+N H+L+N +R HQAR  V++ L++Q QE
Sbjct:   32 PAPPEPMEPTYHMFGSPYSTQDVVPDLLPQPGKKVYAPEGDEGDAAAVDYKAQMKKINRSLLANFVELVDVLIKKPAMFNEKLDDIELLFLNMHNLINGFRPHQARETVIQMLKTQVQE 150          
BLAST of mRNA_Ecto-sp13_S_contig16077.4443.1 vs. uniprot
Match: A0A3R7NJF2_9STRA (Mediator of RNA polymerase II transcription subunit 7 n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7NJF2_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 9.350e-20
Identity = 51/120 (42.50%), Postives = 79/120 (65.83%), Query Frame = 0
Query:   40 PRPPGPGE-TYRMFGMPYSSEPVEQELLPP--EKIVVPAS-----GQAIDFRAELKGLLNSIMANYGQFMEMLVSSPARAHEKLSDVETLFVNFHSLLNRYRAHQARHIVLERLRSQAQE 151
            P PP P E TY MFG PYS++ V  +LLP   +K+  PA         +D++A++K +  S++AN+ + +++L+  PA  +EKL DVE LF+N H+L+N +R HQAR  V++ L++Q QE
Sbjct:   35 PSPPEPMEPTYHMFGSPYSTQDVVPDLLPQPDKKLYAPAEDAEGDASVVDYKAQMKKINRSLLANFVELVDVLIKKPAMFNEKLDDVELLFLNMHNLINAFRPHQARETVIQMLKTQVQE 154          
BLAST of mRNA_Ecto-sp13_S_contig16077.4443.1 vs. uniprot
Match: F0WF41_9STRA (Mediator of RNA polymerase II transcription subunit 7 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WF41_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 1.620e-19
Identity = 57/158 (36.08%), Postives = 93/158 (58.86%), Query Frame = 0
Query:   32 LDDFPIQPPRPPGP-GETYRMFGMPYSSEPVEQELLPPEKIVVPASG--------QAIDFRAELKGLLNSIMANYGQFMEMLVSSPARAHEKLSDVETLFVNFHSLLNRYRAHQARHIVLERLRSQAQENDAVMSALEAAMHQCTSAQEGAFSCLGLE 180
            +DD  +  P PP P    Y MFG PYS++ V  +LLP +   +  S         QAID++A+LK L  S++AN  Q +++L+ +P   +EK+ D+E LFVN H+L+N++R HQAR ++++ LR Q +E  A ++ +   + +     E A S L ++
Sbjct:   28 IDD--VNAPAPPAPMAPNYHMFGTPYSTKDVVPDLLPDDSKKLYLSDTSAQDPAPQAIDYKAQLKKLNRSLLANCIQLLDVLIRNPKVFNEKVDDLELLFVNMHNLINKFRPHQAREMIIQLLRGQIEEKQAAINDIRRVLIESREQVERAHSALDVD 183          
BLAST of mRNA_Ecto-sp13_S_contig16077.4443.1 vs. uniprot
Match: A0A2P4YE96_9STRA (Mediator of RNA polymerase II transcription subunit (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YE96_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 1.720e-19
Identity = 50/114 (43.86%), Postives = 78/114 (68.42%), Query Frame = 0
Query:   40 PRPPGPGE-TYRMFGMPYSSEPVEQELLP-PEKIVVPASGQAIDFRAELKGLLNSIMANYGQFMEMLVSSPARAHEKLSDVETLFVNFHSLLNRYRAHQARHIVLERLRSQAQE 151
            P PP P E TY MFG PYS++ V  +LLP P++ +       +D++AE+K +  S++AN+ + +++L+  PA  +EKL DVE LF+N H+L+N +R HQAR  V++ L++Q QE
Sbjct:  585 PAPPEPMEPTYHMFGSPYSTQDVVPDLLPQPDRKLYAQGDDPVDYKAEMKKINRSLLANFVELVDILIKKPAMFNEKLDDVELLFLNMHNLINAFRPHQARETVIQMLKTQVQE 698          
BLAST of mRNA_Ecto-sp13_S_contig16077.4443.1 vs. uniprot
Match: A0A024GGG9_9STRA (Mediator of RNA polymerase II transcription subunit 7 n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GGG9_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 2.330e-18
Identity = 57/152 (37.50%), Postives = 90/152 (59.21%), Query Frame = 0
Query:   34 DFPIQPPRPPGPGETYRMFGMPYSSEPVEQELLPPE--KIVVPASG------QAIDFRAELKGLLNSIMANYGQFMEMLVSSPARAHEKLSDVETLFVNFHSLLNRYRAHQARHIVLERLRSQAQENDAVMSALEAAMHQCTSAQEGAFSCL 177
            D P+ PP P  P   Y MFG PYS++ +  +LLP +  K+ +P         Q+ID++A+LK L  S++AN  Q +++L+ +P   +EK+ D+E LFVN H+L+N++R HQAR  ++  L+SQ +E  A +S     + +     E A S L
Sbjct:   55 DAPL-PPAPMAPN--YHMFGTPYSTKDIVPDLLPDDSKKLYLPTLSTQDPKEQSIDYKAQLKKLNRSLLANCIQLLDVLIRNPKLFNEKVDDLELLFVNMHNLINKFRPHQAREHIILMLQSQIEEKQAAISDFRRVLEESREQVERAHSAL 203          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16077.4443.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LAU4_ECTSI1.760e-12596.06Mediator of RNA polymerase II transcription subuni... [more]
A0A6H5JU59_9PHAE3.520e-12390.74Mediator of RNA polymerase II transcription subuni... [more]
A0A6U1QAX8_9STRA3.770e-2340.85Mediator of RNA polymerase II transcription subuni... [more]
H3GJZ4_PHYRM4.360e-2144.07Mediator of RNA polymerase II transcription subuni... [more]
A0A329SFW2_9STRA2.480e-2043.70Mediator of RNA polymerase II transcription subuni... [more]
A0A6A3XWY7_9STRA9.010e-2042.02Mediator of RNA polymerase II transcription subuni... [more]
A0A3R7NJF2_9STRA9.350e-2042.50Mediator of RNA polymerase II transcription subuni... [more]
F0WF41_9STRA1.620e-1936.08Mediator of RNA polymerase II transcription subuni... [more]
A0A2P4YE96_9STRA1.720e-1943.86Mediator of RNA polymerase II transcription subuni... [more]
A0A024GGG9_9STRA2.330e-1837.50Mediator of RNA polymerase II transcription subuni... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 142..162
NoneNo IPR availablePANTHERPTHR21428FAMILY NOT NAMEDcoord: 39..178
IPR009244Mediator complex, subunit Med7PFAMPF05983Med7coord: 37..167
e-value: 2.2E-26
score: 93.1
IPR037212Mediator complex, subunit Med7/Med21-likeSUPERFAMILY140718Mediator hinge subcomplex-likecoord: 80..168

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16077contigEcto-sp13_S_contig16077:196..2466 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16077.4443.1mRNA_Ecto-sp13_S_contig16077.4443.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig16077 196..2466 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig16077.4443.1 ID=prot_Ecto-sp13_S_contig16077.4443.1|Name=mRNA_Ecto-sp13_S_contig16077.4443.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=254bp
LGASLTGQEVGASAATTAAPGDSAGGAGGTALDDFPIQPPRPPGPGETYR
MFGMPYSSEPVEQELLPPEKIVVPASGQAIDFRAELKGLLNSIMANYGQF
MEMLVSSPARAHEKLSDVETLFVNFHSLLNRYRAHQARHIVLERLRSQAQ
ENDAVMSALEAAMHQCTSAQEGAFSCLGLEENGASGVVEGEGERAPQGRV
EMDVDETVGGAATPAVGEGGVAGEGVAASEFGKAGKGKLRAVLAPAIESG
NPR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009244Mediatior_Med7
IPR037212Med7/Med21-like