mRNA_Ecto-sp13_S_contig16077.4443.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig16077.4443.1 vs. uniprot
Match: D8LAU4_ECTSI (Mediator of RNA polymerase II transcription subunit 7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAU4_ECTSI) HSP 1 Score: 363 bits (932), Expect = 1.760e-125 Identity = 195/203 (96.06%), Postives = 199/203 (98.03%), Query Frame = 1
Query: 151 MFGMPYSSEPVEQELLPPEKIVVPASGQAIDFRAELKGLLNSIMANYGQFMEMLVSSPARAHEKLSDVETLFVNFHSLLNRYRAHQARHIVLERLRSQAQENDAVMSALEAAMHQCTSAQEGAFSCLGLEENGASGVVEGEGERAPQGRVEMDVDETVGGAATPAVGEGGVAGEGVAASEFGKAGKGKLRAVLAPAIESGNPR 759
MFGMPYSSEPVEQELLPPEKIVVPASGQAIDFRAELKGLLNSIMANYGQFMEMLVSSPARAHEKLSDVETLFVNFHSLLNRYRAHQARHIVLERLRSQA+ENDAVMSALEAAMHQCTSAQEGAFSCLGL+ENGASGV EGEGERA QGRVEMDVDET+GGAAT AVGEGGVAGEGVAASEFGKAGKGKL AVLAPA+ESGNPR
Sbjct: 1 MFGMPYSSEPVEQELLPPEKIVVPASGQAIDFRAELKGLLNSIMANYGQFMEMLVSSPARAHEKLSDVETLFVNFHSLLNRYRAHQARHIVLERLRSQAKENDAVMSALEAAMHQCTSAQEGAFSCLGLQENGASGVAEGEGERARQGRVEMDVDETIGGAATTAVGEGGVAGEGVAASEFGKAGKGKLGAVLAPAVESGNPR 203
BLAST of mRNA_Ecto-sp13_S_contig16077.4443.1 vs. uniprot
Match: A0A6H5JU59_9PHAE (Mediator of RNA polymerase II transcription subunit 7 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU59_9PHAE) HSP 1 Score: 361 bits (926), Expect = 3.520e-123 Identity = 196/216 (90.74%), Postives = 205/216 (94.91%), Query Frame = 1
Query: 4 GASLTGQEVGASAATTAAPGDSAGGAGGTALDDFPIQPPRPPGPGETYRMFGMPYSSEPVEQELLPPEKIVVPASGQAIDFRAELKGLLNSIMANYGQFMEMLVSSPARAHEKLSDVETLFVNFHSLLNRYRAHQARHIVLERLRSQAQENDAVMSALEAAMHQCTSAQEGAFSCLGLEENGASGVVEGEGERAPQGRVEMDVDETVGGAATPAVG 651
GASLTGQ+VGASAA AAPGDSAGGAGGTA ++FP+QPPRPPGPGETYRMFGMPYSSEPVEQELLPPEKIVVPASGQAIDFRA LKGLLNSIMANYGQFMEMLVSSPARAHEKLSDVETLFVNFHSLLNRYRAHQARHIVLERLRSQA+ENDAVMS LEAAMHQCTSAQE AFSCLGL+E+GAS V EGE ERA QGRVEMD+DET+GGAAT AVG
Sbjct: 25 GASLTGQDVGASAAI-AAPGDSAGGAGGTAPNEFPLQPPRPPGPGETYRMFGMPYSSEPVEQELLPPEKIVVPASGQAIDFRAGLKGLLNSIMANYGQFMEMLVSSPARAHEKLSDVETLFVNFHSLLNRYRAHQARHIVLERLRSQAEENDAVMSTLEAAMHQCTSAQESAFSCLGLQEHGASCVAEGERERAQQGRVEMDIDETIGGAATTAVG 239
BLAST of mRNA_Ecto-sp13_S_contig16077.4443.1 vs. uniprot
Match: A0A6U1QAX8_9STRA (Mediator of RNA polymerase II transcription subunit 7 n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1QAX8_9STRA) HSP 1 Score: 101 bits (252), Expect = 3.770e-23 Identity = 58/142 (40.85%), Postives = 87/142 (61.27%), Query Frame = 1
Query: 94 LDDFPIQPPRPPGPGETYRMFGMPYSSEPVEQELLPPEKIVVPASGQAI-DFRAELKGLLNSIMANYGQFMEMLVSSPARAHEKLSDVETLFVNFHSLLNRYRAHQARHIVLERLRSQAQENDAVMSALEAAMHQCTSAQEG 516
+D Q RPP P +Y FG+PYS+E L+P EK + P +FR+E++ LL SIMANY Q +++L+ P++ K+ ++E LFVNFHS+LN++R HQAR +VL RL+ Q ++ ++ LE+ M EG
Sbjct: 21 FEDENFQLKRPPVPEGSYASFGIPYSAEAFIPTLVPDEKKLGPKQDDLDRNFRSEMQKLLQSIMANYVQLLDILIECPSQQSRKVEELEQLFVNFHSILNQFRQHQAREMVLVRLKRQKKDEQKALAMLESQMEAVRQVVEG 162
BLAST of mRNA_Ecto-sp13_S_contig16077.4443.1 vs. uniprot
Match: H3GJZ4_PHYRM (Mediator of RNA polymerase II transcription subunit 7 n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GJZ4_PHYRM) HSP 1 Score: 100 bits (250), Expect = 4.360e-21 Identity = 52/118 (44.07%), Postives = 80/118 (67.80%), Query Frame = 1
Query: 118 PRPPGPGE-TYRMFGMPYSSEPVEQELLPPEKIVVPASGQA-----IDFRAELKGLLNSIMANYGQFMEMLVSSPARAHEKLSDVETLFVNFHSLLNRYRAHQARHIVLERLRSQAQE 453
P PP P E TY MFG PYS++ V +LLP +K+ PA + +D++AE+K + S++AN+ + +++L+ PA +EKL DVE LF+N H+L+N +R HQAR V++ L++Q QE
Sbjct: 174 PAPPEPMEPTYHMFGSPYSTQDVVPDLLPGKKLYAPAGEEGDEDAPVDYKAEMKKINRSLLANFVELVDVLIKKPAMFNEKLDDVELLFLNMHNLINSFRPHQARETVIQMLKTQVQE 291
BLAST of mRNA_Ecto-sp13_S_contig16077.4443.1 vs. uniprot
Match: A0A329SFW2_9STRA (Mediator of RNA polymerase II transcription subunit 7 n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SFW2_9STRA) HSP 1 Score: 96.7 bits (239), Expect = 2.480e-20 Identity = 52/119 (43.70%), Postives = 79/119 (66.39%), Query Frame = 1
Query: 118 PRPPGPGE-TYRMFGMPYSSEPVEQELLPP--EKIVVP----ASGQAIDFRAELKGLLNSIMANYGQFMEMLVSSPARAHEKLSDVETLFVNFHSLLNRYRAHQARHIVLERLRSQAQE 453
P PP P E TY MFG PYS++ V +LLP +K+ P G +D++AE+K + S++AN+ + +++L+ PA +EKL DVE LF+N H+L+N +R HQAR V++ L++Q QE
Sbjct: 34 PAPPEPMEPTYHMFGSPYSTQDVVPDLLPQPGKKLYAPQGEDGGGAPVDYKAEMKKINRSLLANFVELVDVLIKKPAMFNEKLDDVELLFLNMHNLINAFRPHQARETVIQMLKTQVQE 152
BLAST of mRNA_Ecto-sp13_S_contig16077.4443.1 vs. uniprot
Match: A0A6A3XWY7_9STRA (Mediator of RNA polymerase II transcription subunit 7 n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3XWY7_9STRA) HSP 1 Score: 95.1 bits (235), Expect = 9.010e-20 Identity = 50/119 (42.02%), Postives = 80/119 (67.23%), Query Frame = 1
Query: 118 PRPPGPGE-TYRMFGMPYSSEPVEQELLPP--EKIVVPASGQ----AIDFRAELKGLLNSIMANYGQFMEMLVSSPARAHEKLSDVETLFVNFHSLLNRYRAHQARHIVLERLRSQAQE 453
P PP P E TY MFG PYS++ V +LLP +K+ P + A+D++A++K + S++AN+ + +++L+ PA +EKL D+E LF+N H+L+N +R HQAR V++ L++Q QE
Sbjct: 32 PAPPEPMEPTYHMFGSPYSTQDVVPDLLPQPGKKVYAPEGDEGDAAAVDYKAQMKKINRSLLANFVELVDVLIKKPAMFNEKLDDIELLFLNMHNLINGFRPHQARETVIQMLKTQVQE 150
BLAST of mRNA_Ecto-sp13_S_contig16077.4443.1 vs. uniprot
Match: A0A3R7NJF2_9STRA (Mediator of RNA polymerase II transcription subunit 7 n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7NJF2_9STRA) HSP 1 Score: 95.1 bits (235), Expect = 9.350e-20 Identity = 51/120 (42.50%), Postives = 79/120 (65.83%), Query Frame = 1
Query: 118 PRPPGPGE-TYRMFGMPYSSEPVEQELLPP--EKIVVPAS-----GQAIDFRAELKGLLNSIMANYGQFMEMLVSSPARAHEKLSDVETLFVNFHSLLNRYRAHQARHIVLERLRSQAQE 453
P PP P E TY MFG PYS++ V +LLP +K+ PA +D++A++K + S++AN+ + +++L+ PA +EKL DVE LF+N H+L+N +R HQAR V++ L++Q QE
Sbjct: 35 PSPPEPMEPTYHMFGSPYSTQDVVPDLLPQPDKKLYAPAEDAEGDASVVDYKAQMKKINRSLLANFVELVDVLIKKPAMFNEKLDDVELLFLNMHNLINAFRPHQARETVIQMLKTQVQE 154
BLAST of mRNA_Ecto-sp13_S_contig16077.4443.1 vs. uniprot
Match: F0WF41_9STRA (Mediator of RNA polymerase II transcription subunit 7 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WF41_9STRA) HSP 1 Score: 94.4 bits (233), Expect = 1.620e-19 Identity = 57/158 (36.08%), Postives = 93/158 (58.86%), Query Frame = 1
Query: 94 LDDFPIQPPRPPGP-GETYRMFGMPYSSEPVEQELLPPEKIVVPASG--------QAIDFRAELKGLLNSIMANYGQFMEMLVSSPARAHEKLSDVETLFVNFHSLLNRYRAHQARHIVLERLRSQAQENDAVMSALEAAMHQCTSAQEGAFSCLGLE 540
+DD + P PP P Y MFG PYS++ V +LLP + + S QAID++A+LK L S++AN Q +++L+ +P +EK+ D+E LFVN H+L+N++R HQAR ++++ LR Q +E A ++ + + + E A S L ++
Sbjct: 28 IDD--VNAPAPPAPMAPNYHMFGTPYSTKDVVPDLLPDDSKKLYLSDTSAQDPAPQAIDYKAQLKKLNRSLLANCIQLLDVLIRNPKVFNEKVDDLELLFVNMHNLINKFRPHQAREMIIQLLRGQIEEKQAAINDIRRVLIESREQVERAHSALDVD 183
BLAST of mRNA_Ecto-sp13_S_contig16077.4443.1 vs. uniprot
Match: A0A2P4YE96_9STRA (Mediator of RNA polymerase II transcription subunit (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YE96_9STRA) HSP 1 Score: 97.8 bits (242), Expect = 1.720e-19 Identity = 50/114 (43.86%), Postives = 78/114 (68.42%), Query Frame = 1
Query: 118 PRPPGPGE-TYRMFGMPYSSEPVEQELLP-PEKIVVPASGQAIDFRAELKGLLNSIMANYGQFMEMLVSSPARAHEKLSDVETLFVNFHSLLNRYRAHQARHIVLERLRSQAQE 453
P PP P E TY MFG PYS++ V +LLP P++ + +D++AE+K + S++AN+ + +++L+ PA +EKL DVE LF+N H+L+N +R HQAR V++ L++Q QE
Sbjct: 585 PAPPEPMEPTYHMFGSPYSTQDVVPDLLPQPDRKLYAQGDDPVDYKAEMKKINRSLLANFVELVDILIKKPAMFNEKLDDVELLFLNMHNLINAFRPHQARETVIQMLKTQVQE 698
BLAST of mRNA_Ecto-sp13_S_contig16077.4443.1 vs. uniprot
Match: A0A024GGG9_9STRA (Mediator of RNA polymerase II transcription subunit 7 n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GGG9_9STRA) HSP 1 Score: 91.7 bits (226), Expect = 2.330e-18 Identity = 57/152 (37.50%), Postives = 90/152 (59.21%), Query Frame = 1
Query: 100 DFPIQPPRPPGPGETYRMFGMPYSSEPVEQELLPPE--KIVVPASG------QAIDFRAELKGLLNSIMANYGQFMEMLVSSPARAHEKLSDVETLFVNFHSLLNRYRAHQARHIVLERLRSQAQENDAVMSALEAAMHQCTSAQEGAFSCL 531
D P+ PP P P Y MFG PYS++ + +LLP + K+ +P Q+ID++A+LK L S++AN Q +++L+ +P +EK+ D+E LFVN H+L+N++R HQAR ++ L+SQ +E A +S + + E A S L
Sbjct: 55 DAPL-PPAPMAPN--YHMFGTPYSTKDIVPDLLPDDSKKLYLPTLSTQDPKEQSIDYKAQLKKLNRSLLANCIQLLDVLIRNPKLFNEKVDDLELLFVNMHNLINKFRPHQAREHIILMLQSQIEEKQAAISDFRRVLEESREQVERAHSAL 203 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16077.4443.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig16077.4443.1 >prot_Ecto-sp13_S_contig16077.4443.1 ID=prot_Ecto-sp13_S_contig16077.4443.1|Name=mRNA_Ecto-sp13_S_contig16077.4443.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=254bp LGASLTGQEVGASAATTAAPGDSAGGAGGTALDDFPIQPPRPPGPGETYRback to top mRNA from alignment at Ecto-sp13_S_contig16077:196..2466+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig16077.4443.1 ID=mRNA_Ecto-sp13_S_contig16077.4443.1|Name=mRNA_Ecto-sp13_S_contig16077.4443.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2271bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16077:196..2466+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16077:196..2466+ >mRNA_Ecto-sp13_S_contig16077.4443.1 ID=mRNA_Ecto-sp13_S_contig16077.4443.1|Name=mRNA_Ecto-sp13_S_contig16077.4443.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=762bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16077:196..2466+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |