mRNA_Ecto-sp13_S_contig10468.444.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10468.444.1 vs. uniprot
Match: D8LI68_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI68_ECTSI) HSP 1 Score: 142 bits (357), Expect = 1.850e-37 Identity = 78/81 (96.30%), Postives = 80/81 (98.77%), Query Frame = 1
Query: 4 RALRDLSRKVTVLEVNEAVMARRFASIKEQLQVEAEARAASERDFLEMSTAGKTRVLYLEQWKAGASARLLRLQQRLDVSV 246
RALRDLSRKV+VLEVNEAVMARRF S+KEQLQVEAEARAASERDFLEMSTAGKTRVLYLEQWKAGASARLLRLQQRLDVSV
Sbjct: 1023 RALRDLSRKVSVLEVNEAVMARRFTSVKEQLQVEAEARAASERDFLEMSTAGKTRVLYLEQWKAGASARLLRLQQRLDVSV 1103
BLAST of mRNA_Ecto-sp13_S_contig10468.444.1 vs. uniprot
Match: A0A6H5KTB3_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTB3_9PHAE) HSP 1 Score: 142 bits (357), Expect = 1.860e-37 Identity = 77/81 (95.06%), Postives = 80/81 (98.77%), Query Frame = 1
Query: 4 RALRDLSRKVTVLEVNEAVMARRFASIKEQLQVEAEARAASERDFLEMSTAGKTRVLYLEQWKAGASARLLRLQQRLDVSV 246
RALRDLSRKVTVLEVNEAVMARRFAS+KEQLQVEAEARA SERDFL+MSTAGKTR+LYLEQWKAGASARLLRLQQRLDVSV
Sbjct: 653 RALRDLSRKVTVLEVNEAVMARRFASVKEQLQVEAEARAVSERDFLDMSTAGKTRILYLEQWKAGASARLLRLQQRLDVSV 733
BLAST of mRNA_Ecto-sp13_S_contig10468.444.1 vs. uniprot
Match: A0A7S2SDN8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SDN8_9STRA) HSP 1 Score: 75.9 bits (185), Expect = 9.440e-15 Identity = 44/79 (55.70%), Postives = 54/79 (68.35%), Query Frame = 1
Query: 10 LRDLSRKVTVLEVNEAVMARRFASIKEQLQVEAEARAASERDFLEMSTAGKTRVLYLEQWKAGASARLLRLQQRLDVSV 246
L+ L RK LE NE V+ RR AS++EQ+Q EAEA+ ++R LE K R+LYLE+WK GAS RL RLQ RLD SV
Sbjct: 179 LQALGRKAVALEANELVLRRRCASLEEQVQSEAEAKTGAQRTALEAEMELKARLLYLEEWKQGASERLERLQARLDDSV 257
BLAST of mRNA_Ecto-sp13_S_contig10468.444.1 vs. uniprot
Match: A0A7S2SBV2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SBV2_9STRA) HSP 1 Score: 75.9 bits (185), Expect = 2.450e-14 Identity = 44/79 (55.70%), Postives = 54/79 (68.35%), Query Frame = 1
Query: 10 LRDLSRKVTVLEVNEAVMARRFASIKEQLQVEAEARAASERDFLEMSTAGKTRVLYLEQWKAGASARLLRLQQRLDVSV 246
L+ L RK LE NE V+ RR AS++EQ+Q EAEA+ ++R LE K R+LYLE+WK GAS RL RLQ RLD SV
Sbjct: 296 LQALGRKAVALEANELVLRRRCASLEEQVQSEAEAKTGAQRTALEAEMELKARLLYLEEWKQGASERLERLQARLDDSV 374
BLAST of mRNA_Ecto-sp13_S_contig10468.444.1 vs. uniprot
Match: A0A835Z5T3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5T3_9STRA) HSP 1 Score: 73.6 bits (179), Expect = 2.090e-13 Identity = 41/80 (51.25%), Postives = 58/80 (72.50%), Query Frame = 1
Query: 4 RALRDLSRKVTVLEVNEAVMARRFASIKEQLQVEAEARAASERDFLEMSTAGKTRVLYLEQWKAGASARLLRLQQRLDVS 243
R LR+L+R+VTV EVNE +ARR A+++EQL++ EAR +E D +E A KTR+L+LEQ +AGA+ R+ RL L+ S
Sbjct: 225 RLLRELTRRVTVFEVNEQELARRHANMEEQLRLANEARERAEGDLIEAEAAAKTRILFLEQHRAGAAERVARLTAELERS 304
BLAST of mRNA_Ecto-sp13_S_contig10468.444.1 vs. uniprot
Match: A0A812W2G3_SYMMI (Cep290 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812W2G3_SYMMI) HSP 1 Score: 67.4 bits (163), Expect = 6.420e-12 Identity = 38/79 (48.10%), Postives = 54/79 (68.35%), Query Frame = 1
Query: 10 LRDLSRKVTVLEVNEAVMARRFASIKEQLQVEAEARAASERDFLEMSTAGKTRVLYLEQWKAGASARLLRLQQRLDVSV 246
+++ +RKVTV EVNEAV++R+F ++ EQ+ E RA E DF+EM K R+L+LEQ+KA S RL +L+ L SV
Sbjct: 82 IKEYTRKVTVYEVNEAVLSRKFMALSEQMAEEQSLRARVEADFVEMEGTLKRRILFLEQYKAICSPRLDKLETELQYSV 160
BLAST of mRNA_Ecto-sp13_S_contig10468.444.1 vs. uniprot
Match: A0A2R5G9X9_9STRA (Centrosomal protein of 290 kDa n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G9X9_9STRA) HSP 1 Score: 60.5 bits (145), Expect = 8.530e-9 Identity = 32/75 (42.67%), Postives = 51/75 (68.00%), Query Frame = 1
Query: 13 RDLSRKVTVLEVNEAVMARRFASIKEQLQVEAEARAASERDFLEMSTAGKTRVLYLEQWKAGASARLLRLQQRLD 237
+DL+RKV +LEVNE V+ARR+ + E+ + + + + + ++ TA + RVLYLE+WKAGA A+L +Q +D
Sbjct: 903 KDLTRKVALLEVNEVVLARRYNLVVEEERSVRHEKESLQHEMVQAETALRERVLYLEEWKAGAQAQLDAMQTSMD 977
BLAST of mRNA_Ecto-sp13_S_contig10468.444.1 vs. uniprot
Match: A0A7S1TUX8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TUX8_9STRA) HSP 1 Score: 60.1 bits (144), Expect = 1.140e-8 Identity = 36/78 (46.15%), Postives = 50/78 (64.10%), Query Frame = 1
Query: 10 LRDLSRKVTVLEVNEAVMARRFASIKEQLQVEAEARAASERDFLEMSTAGKTRVLYLEQWKAGASARLLRLQQRLDVS 243
L++ +RK T+LEVNEAV+ARR+ S++ QL EA R SE+ E + + R+LYLEQWKA A + RL+ S
Sbjct: 668 LKEQTRKCTLLEVNEAVLARRYRSLEAQLAQEAVRRRESEKALKEATVLWRHRILYLEQWKARAVGEMEVYAARLERS 745
BLAST of mRNA_Ecto-sp13_S_contig10468.444.1 vs. uniprot
Match: A0A7R9U7L5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U7L5_9STRA) HSP 1 Score: 58.2 bits (139), Expect = 4.510e-8 Identity = 33/78 (42.31%), Postives = 50/78 (64.10%), Query Frame = 1
Query: 10 LRDLSRKVTVLEVNEAVMARRFASIKEQLQVEAEARAASERDFLEMSTAGKTRVLYLEQWKAGASARLLRLQQRLDVS 243
L++ +R+ T+LEVNEAV+ARR+ S++ QL E + R +E + E + + R+LYLEQWKA A + RL+ S
Sbjct: 209 LKEQTRRCTILEVNEAVLARRYRSLESQLAQEKQRRKEAETELKEATIIWRHRILYLEQWKARAVGEIEVYVARLERS 286
BLAST of mRNA_Ecto-sp13_S_contig10468.444.1 vs. uniprot
Match: A0A7I8W7E1_9ANNE (DgyrCDS12430 n=1 Tax=Dimorphilus gyrociliatus TaxID=2664684 RepID=A0A7I8W7E1_9ANNE) HSP 1 Score: 56.2 bits (134), Expect = 2.650e-7 Identity = 33/79 (41.77%), Postives = 49/79 (62.03%), Query Frame = 1
Query: 10 LRDLSRKVTVLEVNEAVMARRFASIKEQLQVEAEARAASERDFLEMSTAGKTRVLYLEQWKAGASARLLRLQQRLDVSV 246
L DL+RK+TVL+VNE + RRF ++ E Q + + + +EM A R+ YL+++K AS +L LQ+RLD SV
Sbjct: 859 LADLTRKITVLKVNEKALTRRFTALSEMEQTCRKENTKLKNEMIEMEAAITDRISYLQRYKDMASFKLASLQKRLDDSV 937 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10468.444.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10468.444.1 >prot_Ecto-sp13_S_contig10468.444.1 ID=prot_Ecto-sp13_S_contig10468.444.1|Name=mRNA_Ecto-sp13_S_contig10468.444.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=82bp RRALRDLSRKVTVLEVNEAVMARRFASIKEQLQVEAEARAASERDFLEMSback to top mRNA from alignment at Ecto-sp13_S_contig10468:1501..2045+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10468.444.1 ID=mRNA_Ecto-sp13_S_contig10468.444.1|Name=mRNA_Ecto-sp13_S_contig10468.444.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=545bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10468:1501..2045+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10468:1501..2045+ >mRNA_Ecto-sp13_S_contig10468.444.1 ID=mRNA_Ecto-sp13_S_contig10468.444.1|Name=mRNA_Ecto-sp13_S_contig10468.444.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=246bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10468:1501..2045+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |