mRNA_Ecto-sp13_S_contig16072.4441.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16072.4441.1
Unique NamemRNA_Ecto-sp13_S_contig16072.4441.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16072.4441.1 vs. uniprot
Match: D8LKM8_ECTSI (TAZ-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKM8_ECTSI)

HSP 1 Score: 225 bits (573), Expect = 1.380e-67
Identity = 116/123 (94.31%), Postives = 119/123 (96.75%), Query Frame = 2 
Query:  224 QARQRSSDDDDPTKGGVALGGVHASPDSEVSRRLDLLMDKSFGDLQFLSDEFSKLEVVVAPAVQEGDDSGKAGTDSKLGRLRFFTTHVRRTMARIRDARSGRDPLSMSQLALLEEHIATSITP 592
            QARQRSSDDD PTKGGVALGGV ASPDSEVSRRLDLLMDKSFGDLQFLSDEF+KLEVVVAPAVQE DDSGKAGTDSKLGRLRFFTTHVRRTMAR+RDARSGRDP+SMSQLALLEEHIATSI P
Sbjct:   32 QARQRSSDDDAPTKGGVALGGVQASPDSEVSRRLDLLMDKSFGDLQFLSDEFAKLEVVVAPAVQERDDSGKAGTDSKLGRLRFFTTHVRRTMARMRDARSGRDPMSMSQLALLEEHIATSIAP 154
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16072.4441.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKM8_ECTSI1.380e-6794.31TAZ-type domain-containing protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16072contigEcto-sp13_S_contig16072:1020..3675 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size606
Hectar predicted targeting categoryother localisation
Exons3
Cds size522
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462848.6933424-UTR-Ecto-sp13_S_contig16072:1019..10601681462848.6933424-UTR-Ecto-sp13_S_contig16072:1019..1060Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16072 1020..1060 +
1681462848.7417614-UTR-Ecto-sp13_S_contig16072:3632..36751681462848.7417614-UTR-Ecto-sp13_S_contig16072:3632..3675Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16072 3633..3675 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462848.7051256-CDS-Ecto-sp13_S_contig16072:1060..13411681462848.7051256-CDS-Ecto-sp13_S_contig16072:1060..1341Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16072 1061..1341 +
1681462848.7156382-CDS-Ecto-sp13_S_contig16072:1997..20971681462848.7156382-CDS-Ecto-sp13_S_contig16072:1997..2097Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16072 1998..2097 +
1681462848.7264388-CDS-Ecto-sp13_S_contig16072:3491..36321681462848.7264388-CDS-Ecto-sp13_S_contig16072:3491..3632Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16072 3492..3632 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16072.4441.1prot_Ecto-sp13_S_contig16072.4441.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16072 1061..3632 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16072.4441.1

>prot_Ecto-sp13_S_contig16072.4441.1 ID=prot_Ecto-sp13_S_contig16072.4441.1|Name=mRNA_Ecto-sp13_S_contig16072.4441.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=174bp
MFDSAVPKERPRTTRRQPSATASAAAAAVARGIGSGAVVPNPLHPAAAEC
RLLGVRLANSSRRDSARAMTMIRRRVALRWAVCMLAPTRRCQDGWIYSWT
SPSEIFSSSRTNFRSWRSWWRQQCRRGTTAARRAQTRSWGGSASSPHTSV
GRWPGYGTRGAGATPCPCPSWLC*
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mRNA from alignment at Ecto-sp13_S_contig16072:1020..3675+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16072.4441.1 ID=mRNA_Ecto-sp13_S_contig16072.4441.1|Name=mRNA_Ecto-sp13_S_contig16072.4441.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2656bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16072:1020..3675+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGACGTACACGTACATACGAGTACGATCACACGCACGTTCATGTTTGAC
TCGGCCGTGCCCAAGGAACGCCCGAGGACAACCCGACGACAGCCATCAGC
CACGGCGTCAGCAGCAGCGGCGGCGGTCGCAAGAGGAATCGGGAGCGGTG
CGGTTGTGCCCAACCCTCTCCATCCAGCAGCAGCGGAATGCCGGTTACTC
GGCGTGCGACTAGCAAACTCGTCCAGGCGCGACAGCGCTCGAGCGATGAC
GATGATCCGACGAAGGGTGGCGTTGCGTTGGGCGGTGTGCATGCTAGCCC
CGACTCGGAGGTGTCAAGACGGGTGAGGAATCCGTGCATCCTCGCCATCG
TACACGTGTGTCCATGTTTTTGTGCTGGCTACTGCTGTCCGCTACAACAT
GTGTTTGTCTGAGGTTTAGGATGCTTGTGGAGGTCCATCAAACGCAACCC
GCCTCTCCCTCTCCTCGGGCCACCTGCTGTGCAAATCTGCGCTCATGACG
AACCGCACCGGTAGCTTTCTGTGCTTTCGTGCTGTGCGTTCCACGCCCTC
TCCCCTCCGGATCCAACGAACGTGGCTCTCGTAAACGTTGCAGTTGCTAC
TTCAAACTTAGGAAGGAAGGGTGGTCTAAACCTACACTGCTGCTGTGGTT
TTGGCATCATGAATATATAGCTGACACGTCGACCTTTTTCTCGCTCTCTC
TGTTCAGTGTTGATTTTAGCCTCCGCTGCCTCTTTCGGGTGAATGCAATT
TGAACCGCTAACGAACACCCCTCAGCACGACAAGGGGCAACGAATTCTGC
CAAGGGCAGCCGCCGTATGACCTGTGCATGCAGCCGCAGTACATACCGAA
CTGCGCTCCTTTCGCTGTCAACCTCGTCTACCGATCTACTTCACACAAAC
GTCCGACCGGCTTCCTGCTGCCGCTGCTGCTTGCTACTTGTGCTGGTGTG
TCATTTGCGTTTTTTTTTGGAGCAACAGCTGGATCTACTCATGGACAAGT
CCTTCGGAGATCTTCAGTTCCTCTCGGACGAATTTTCGAAGCTGGAGGTC
GTGGTGGCGCCAGCAGTGCAGGAGGGGGGTGAGTATTCGACGCCGTCATG
CCATTTTTGTACCACCGAACGACTAAGCCCGTTGGTTACAGCAGCCTCGT
AGATTCAGGTGCTGTCAAACCCTGCGTGTGTAACAGAGCAGTAAATGAAT
GGCTTCGAGTGCGGACTCACGTGTTGACTACGGACTGTGACAGCAGTACT
GTCTTCTACCATTAATGTTTGGGTGGGCTCAGCGCTCGAGTGGAGTTGCG
AGGCAGGTCAGCAAGTCGTGCTGATGCGGGAAAAAATTCTACGCCTCTTG
TCACTCTCTCTTTTTAACGAATTGGCCTCTTTCGCCCTCCCCCAGTCAGA
GCAAAAACTCAACTCTATCCTGGATTGAGGAAACATCATCTCTCTCCCTA
TCCTGTTATGCACGGGTCGGGATACTGCACGTACAAACGACCATTGAGGT
TTCTTTGCGTGCGTCTTCTCGACCAGCCGCAATAGAAGCCGTCCTTTTTC
TTCCGGTGCAAAACGCCTCCAAGTCAATCATGTGGACAGCAGAGCGGCGC
AAGTGTTTTGCAAAACGGCTTCGCACACAAAGTTGGAATATGTTGTGTAC
TTACTCATTTGCTACGTATGTGTGAGTGCGTTTCGAAAAGGTGGGTCAAC
TAGTCTGTCGAACTCCACCACGATGTTGACACGCATCGGACGTGTTTTTG
TCTCTCCAGACCTTGGTGCCCATGAACGCAGTTGGAATATCTTTGCTGGG
AAATATAGTGGAGAGAAAAGAGATCTTTGGGTGGAAAGAATGCATGCGGA
GAAGGGTTTGGCGAGAAGTGCGTACCAGAGATCTTGGGGGTGGAAAGAAC
GAAAGAGCGCACGCAGAGAGCTTTGGCGAGAAAAGGTTGTACCACCATAC
TTTCGCATCAAATTTCTCCCTCTCTTTTCCGTGTTTCCGAAACCCGAACA
AAAATCACAGAAAGGCGGTAATTCGTTGGATATGCTACGGGGTCCCGCAG
TATAATTCGTTCGCCTTCAAGTCTGGCATTGATTTTTCCGTCAATGGTTT
GCAGAGATATTCAATGTTGGTCTCGCACTGGCACCTGCTTACCTTGACCG
GGAAACGCTCACCACTATACATAAGCCCGATCCATGTCATCGCAGCTGCC
TCCACACCACTAACCAACTCCTGCCTTTTGTTCACAAGAAGCGCTGGGCA
CCACCGTGGATCGTTGCTTTGTCTCCGGAGAACGACAATGTTCTCGCTTC
ACAGTATTTCTAGTAGGACTCTTTTTTTTAGAAAGTATACATTTGCATAC
AACCAAAGAAAGACTACCCATAACCACAGCAGTCGAAGGGTGGTGTACTC
TTGCTTGTTGCTGTTGTCAACGATTCGTGTCTCCGCCGCTGCCGGTGTTT
TTTGCTCTGCTGCATGCAACAGACGACAGCGGCAAGGCGGGCACAGACTC
GAAGCTGGGGAGGCTCCGCTTCTTCACCACACACGTCCGTCGGACGATGG
CCCGGATACGGGACGCGAGGAGCGGGCGCGACCCCCTGTCCATGTCCCAG
CTGGCTCTGCTAGAGGAGCACATCGCGACGTCCATTACTCCGGTGAAGGA
GCGCCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16072:1020..3675+

>mRNA_Ecto-sp13_S_contig16072.4441.1 ID=mRNA_Ecto-sp13_S_contig16072.4441.1|Name=mRNA_Ecto-sp13_S_contig16072.4441.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=522bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16072:1020..3675+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTTGACTCGGCCGTGCCCAAGGAACGCCCGAGGACAACCCGACGACA
GCCATCAGCCACGGCGTCAGCAGCAGCGGCGGCGGTCGCAAGAGGAATCG
GGAGCGGTGCGGTTGTGCCCAACCCTCTCCATCCAGCAGCAGCGGAATGC
CGGTTACTCGGCGTGCGACTAGCAAACTCGTCCAGGCGCGACAGCGCTCG
AGCGATGACGATGATCCGACGAAGGGTGGCGTTGCGTTGGGCGGTGTGCA
TGCTAGCCCCGACTCGGAGGTGTCAAGACGGCTGGATCTACTCATGGACA
AGTCCTTCGGAGATCTTCAGTTCCTCTCGGACGAATTTTCGAAGCTGGAG
GTCGTGGTGGCGCCAGCAGTGCAGGAGGGGGACGACAGCGGCAAGGCGGG
CACAGACTCGAAGCTGGGGAGGCTCCGCTTCTTCACCACACACGTCCGTC
GGACGATGGCCCGGATACGGGACGCGAGGAGCGGGCGCGACCCCCTGTCC
ATGTCCCAGCTGGCTCTGCTAG
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