mRNA_Ecto-sp13_S_contig16069.4438.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16069.4438.1
Unique NamemRNA_Ecto-sp13_S_contig16069.4438.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16069.4438.1 vs. uniprot
Match: A0A6H5J4R7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J4R7_9PHAE)

HSP 1 Score: 262 bits (670), Expect = 7.790e-78
Identity = 156/182 (85.71%), Postives = 156/182 (85.71%), Query Frame = 1 
Query:    4 AAAAAAAANPDRGARLLLGSLLLETSLAAGLLALARSGRVPVSGEDEGADISAEPSRRRIPLRQHDRGGGGAGNAHDAGTPSVDGGGHAAAVAAATADAALIIARDAAALFPDGLWEGLRSDLLPALAAGACSGDVGGSGMRGGSFGDGGVGGIVDAGDVRAGLVLKEVVGGMGTGVVPYAA 549
            AAAAAAAANPDRG R LLGSLLLETSLAAGLLALARSG VPVSGEDEGADISAEPS RR  LRQH R GGGAGNAHD GTPSVDG           ADAALIIARDAAALFPDGLWEGLRSDLLPALAAGACSGDVGGSGMRGGSFGDG    I  AGDVRAGLVLKEVVGGMGTGVVPYAA
Sbjct:  519 AAAAAAAANPDRGERPLLGSLLLETSLAAGLLALARSG-VPVSGEDEGADISAEPSHRRTRLRQHRRSGGGAGNAHDGGTPSVDGXXXXXXXXXXXADAALIIARDAAALFPDGLWEGLRSDLLPALAAGACSGDVGGSGMRGGSFGDGXXXXIGVAGDVRAGLVLKEVVGGMGTGVVPYAA 699
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BLAST of mRNA_Ecto-sp13_S_contig16069.4438.1 vs. uniprot
Match: D8LBB5_ECTSI (Essential abundant protein involved in regulation of transcription n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBB5_ECTSI)

HSP 1 Score: 261 bits (666), Expect = 2.790e-77
Identity = 155/181 (85.64%), Postives = 158/181 (87.29%), Query Frame = 1 
Query:    7 AAAAAAANPDRGARLLLGSLLLETSLAAGLLALARSGRVPVSGEDEGADISAEPSRRRIPLRQHDRGGGGAGNAHDAGTPSVDGGGHAAAVAAATADAALIIARDAAALFPDGLWEGLRSDLLPALAAGACSGDVGGSGMRGGSFGDGGVGGIVDAGDVRAGLVLKEVVGGMGTGVVPYAA 549
            AAAAAAANP RGAR LLGSLLLETSLAAGLLALARSGRVPVSGEDEGADISAEP+R  IPLRQH R GG AGNA D GTPSVDGGGHAAAVAAATADAALIIARDAA LFPDGLWEGLRSDLLPALAAGACSGDVGGSG+           G+  AGDVRAGLVLKEVVGGMGTGVVPYAA
Sbjct: 1390 AAAAAAANPHRGARPLLGSLLLETSLAAGLLALARSGRVPVSGEDEGADISAEPTRGGIPLRQHHRSGGDAGNAPDGGTPSVDGGGHAAAVAAATADAALIIARDAADLFPDGLWEGLRSDLLPALAAGACSGDVGGSGVSXXXXXXXXXIGV--AGDVRAGLVLKEVVGGMGTGVVPYAA 1568
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16069.4438.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J4R7_9PHAE7.790e-7885.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LBB5_ECTSI2.790e-7785.64Essential abundant protein involved in regulation ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16069contigEcto-sp13_S_contig16069:666..1216 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score261.5
Seed ortholog evalue2.9e-67
Seed eggNOG ortholog2880.D8LBB5
Model size553
KEGG koko:K15192
Hectar predicted targeting categorysignal peptide
Exons1
EggNOG free text desc.helicase activity
EggNOG OGsKOG0392@1,KOG0392@2759
Cds size549
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03021
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462848.4938633-CDS-Ecto-sp13_S_contig16069:665..12141681462848.4938633-CDS-Ecto-sp13_S_contig16069:665..1214Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16069 666..1214 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16069.4438.1prot_Ecto-sp13_S_contig16069.4438.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16069 666..1214 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16069.4438.1

>prot_Ecto-sp13_S_contig16069.4438.1 ID=prot_Ecto-sp13_S_contig16069.4438.1|Name=mRNA_Ecto-sp13_S_contig16069.4438.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=183bp
AAAAAAAAANPDRGARLLLGSLLLETSLAAGLLALARSGRVPVSGEDEGA
DISAEPSRRRIPLRQHDRGGGGAGNAHDAGTPSVDGGGHAAAVAAATADA
ALIIARDAAALFPDGLWEGLRSDLLPALAAGACSGDVGGSGMRGGSFGDG
GVGGIVDAGDVRAGLVLKEVVGGMGTGVVPYAA
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mRNA from alignment at Ecto-sp13_S_contig16069:666..1216+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16069.4438.1 ID=mRNA_Ecto-sp13_S_contig16069.4438.1|Name=mRNA_Ecto-sp13_S_contig16069.4438.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=551bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16069:666..1216+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCGCCGCCGCCGCCGCCGCCGCCGCCAACCCTGACCGGGGCGCGCGGCT
TCTCCTGGGAAGCCTCCTGCTCGAAACGTCGCTCGCCGCCGGACTGTTAG
CCCTCGCGCGGTCCGGGCGCGTGCCCGTCTCCGGCGAAGACGAGGGTGCT
GACATTTCTGCCGAACCATCTCGTAGACGCATCCCGCTACGCCAACACGA
TCGCGGCGGCGGGGGTGCTGGAAATGCCCACGATGCAGGCACGCCGAGCG
TAGACGGTGGCGGTCACGCGGCGGCTGTGGCAGCAGCAACGGCGGACGCG
GCATTGATCATCGCAAGGGACGCGGCAGCCTTATTTCCGGACGGGTTGTG
GGAGGGCCTCCGCTCGGACTTGCTCCCGGCCCTCGCGGCCGGGGCGTGTT
CCGGAGATGTCGGTGGGAGCGGTATGCGTGGTGGTAGTTTCGGCGACGGC
GGCGTCGGCGGCATCGTCGATGCGGGAGATGTGAGGGCCGGGCTGGTCTT
GAAGGAAGTGGTGGGCGGGATGGGAACCGGCGTGGTGCCGTACGCCGCGA
G
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16069:666..1216+

>mRNA_Ecto-sp13_S_contig16069.4438.1 ID=mRNA_Ecto-sp13_S_contig16069.4438.1|Name=mRNA_Ecto-sp13_S_contig16069.4438.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=549bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16069:666..1216+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCGCCGCCGCCGCCGCCGCCGCCGCCAACCCTGACCGGGGCGCGCGGCT
TCTCCTGGGAAGCCTCCTGCTCGAAACGTCGCTCGCCGCCGGACTGTTAG
CCCTCGCGCGGTCCGGGCGCGTGCCCGTCTCCGGCGAAGACGAGGGTGCT
GACATTTCTGCCGAACCATCTCGTAGACGCATCCCGCTACGCCAACACGA
TCGCGGCGGCGGGGGTGCTGGAAATGCCCACGATGCAGGCACGCCGAGCG
TAGACGGTGGCGGTCACGCGGCGGCTGTGGCAGCAGCAACGGCGGACGCG
GCATTGATCATCGCAAGGGACGCGGCAGCCTTATTTCCGGACGGGTTGTG
GGAGGGCCTCCGCTCGGACTTGCTCCCGGCCCTCGCGGCCGGGGCGTGTT
CCGGAGATGTCGGTGGGAGCGGTATGCGTGGTGGTAGTTTCGGCGACGGC
GGCGTCGGCGGCATCGTCGATGCGGGAGATGTGAGGGCCGGGCTGGTCTT
GAAGGAAGTGGTGGGCGGGATGGGAACCGGCGTGGTGCCGTACGCCGCG
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