mRNA_Ecto-sp13_S_contig16069.4437.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16069.4437.1
Unique NamemRNA_Ecto-sp13_S_contig16069.4437.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16069.4437.1 vs. uniprot
Match: D8LBB5_ECTSI (Essential abundant protein involved in regulation of transcription n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBB5_ECTSI)

HSP 1 Score: 245 bits (625), Expect = 5.230e-72
Identity = 142/169 (84.02%), Postives = 144/169 (85.21%), Query Frame = 3 
Query:    3 AAATEETLMAVEVACDGATEMLRHAVSLAQSSSVAPTAPVLPPASPASAARPLPAPGSSRSDVGSGGGRDEGXXXXXXXXXXXXXXXRGGRGGKAVRDWALQTLTPLLRHPSGMGAQGGNTIGAGTAALHPPQRKLSAAEKEKSADEIRAIDLSAALGVAEALLQAARD 509
            AAATEETLMAVEVACDGATEMLRHAVSLA SSS APTAPV PP SPASAARPLPAPGSSRSDVGSGGGR EG               RGGRGGKAVRDWAL+TL PLLRHPSGMGAQGGNTIGAGT AL  PQRKLSAAEK+KSA EIRAIDLSAALGVAEALLQAARD
Sbjct: 1219 AAATEETLMAVEVACDGATEMLRHAVSLASSSSAAPTAPVPPPVSPASAARPLPAPGSSRSDVGSGGGRGEGIEEVVKGGGREGGRRRGGRGGKAVRDWALRTLAPLLRHPSGMGAQGGNTIGAGTTALPWPQRKLSAAEKKKSAAEIRAIDLSAALGVAEALLQAARD 1387
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BLAST of mRNA_Ecto-sp13_S_contig16069.4437.1 vs. uniprot
Match: A0A6H5J4R7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J4R7_9PHAE)

HSP 1 Score: 166 bits (419), Expect = 2.640e-44
Identity = 127/178 (71.35%), Postives = 128/178 (71.91%), Query Frame = 3 
Query:    3 AAATEETLMAVEVACDGATEMLRHAVSLAQSSSVAPTAPVLPPASPASAARPLPAPGSSRSDVGSGGGRDEGXXXXXXXXXXXXXXXRGGRGG---------KAVRDWALQTLTPLLRHPSGMGAQGGNTIGAGTAALHPPQRKLSAAEKEKSADEIRAIDLSAALGVAEALLQAARD 509
            AAATEETLMAVEVACDGATEMLRHAVSLA SSS  PTAPVL                               XXXXXXXXXXXXXXX  GR G         KAVRDWALQTL PLLRHPSGMG QGGNTIGAGTAAL  PQRKLSAAEK+KSADEIRAIDLSAALGVAEALLQAARD
Sbjct:  348 AAATEETLMAVEVACDGATEMLRHAVSLAPSSSAVPTAPVL---------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGREGXXXXXXXXXKAVRDWALQTLAPLLRHPSGMGTQGGNTIGAGTAALPRPQRKLSAAEKKKSADEIRAIDLSAALGVAEALLQAARD 516
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16069.4437.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LBB5_ECTSI5.230e-7284.02Essential abundant protein involved in regulation ... [more]
A0A6H5J4R7_9PHAE2.640e-4471.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16069contigEcto-sp13_S_contig16069:148..656 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score238.4
Seed ortholog evalue2.3e-60
Seed eggNOG ortholog2880.D8LBB5
Model size511
KEGG koko:K15192
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.helicase activity
EggNOG OGsKOG0392@1,KOG0392@2759
Cds size483
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03021
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462848.453134-UTR-Ecto-sp13_S_contig16069:147..1731681462848.453134-UTR-Ecto-sp13_S_contig16069:147..173Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16069 148..173 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462848.464291-CDS-Ecto-sp13_S_contig16069:173..6561681462848.464291-CDS-Ecto-sp13_S_contig16069:173..656Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16069 174..656 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16069.4437.1prot_Ecto-sp13_S_contig16069.4437.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16069 174..656 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16069.4437.1

>prot_Ecto-sp13_S_contig16069.4437.1 ID=prot_Ecto-sp13_S_contig16069.4437.1|Name=mRNA_Ecto-sp13_S_contig16069.4437.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=161bp
MAVEVACDGATEMLRHAVSLAQSSSVAPTAPVLPPASPASAARPLPAPGS
SRSDVGSGGGRDEGREEVVKDGGREGGRERGGRGGKAVRDWALQTLTPLL
RHPSGMGAQGGNTIGAGTAALHPPQRKLSAAEKEKSADEIRAIDLSAALG
VAEALLQAARD
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mRNA from alignment at Ecto-sp13_S_contig16069:148..656+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16069.4437.1 ID=mRNA_Ecto-sp13_S_contig16069.4437.1|Name=mRNA_Ecto-sp13_S_contig16069.4437.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=509bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16069:148..656+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCGCAGCGGCGACCGAAGAAACGTTGATGGCGGTGGAAGTCGCTTGCGAT
GGCGCCACGGAGATGCTGAGGCACGCGGTTTCTCTCGCGCAATCGTCGTC
AGTAGCGCCCACGGCGCCCGTGCTGCCGCCTGCTTCGCCCGCGTCTGCCG
CGAGACCGTTGCCGGCTCCCGGCTCTTCTCGCAGCGACGTCGGCAGTGGT
GGTGGTCGTGACGAAGGTAGAGAAGAGGTGGTGAAAGACGGAGGTCGTGA
AGGAGGGAGAGAGAGAGGAGGACGGGGTGGGAAGGCCGTGCGAGACTGGG
CGCTGCAAACTCTCACTCCGCTCTTGCGGCACCCCTCCGGCATGGGAGCG
CAGGGCGGCAACACCATCGGAGCCGGGACAGCGGCGTTGCATCCGCCGCA
GCGAAAGCTCTCGGCAGCGGAGAAAGAGAAGTCGGCGGACGAGATCCGGG
CGATCGACCTGTCCGCCGCGCTTGGGGTAGCGGAGGCGCTGTTGCAGGCC
GCTCGTGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16069:148..656+

>mRNA_Ecto-sp13_S_contig16069.4437.1 ID=mRNA_Ecto-sp13_S_contig16069.4437.1|Name=mRNA_Ecto-sp13_S_contig16069.4437.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=483bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16069:148..656+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGGTGGAAGTCGCTTGCGATGGCGCCACGGAGATGCTGAGGCACGC
GGTTTCTCTCGCGCAATCGTCGTCAGTAGCGCCCACGGCGCCCGTGCTGC
CGCCTGCTTCGCCCGCGTCTGCCGCGAGACCGTTGCCGGCTCCCGGCTCT
TCTCGCAGCGACGTCGGCAGTGGTGGTGGTCGTGACGAAGGTAGAGAAGA
GGTGGTGAAAGACGGAGGTCGTGAAGGAGGGAGAGAGAGAGGAGGACGGG
GTGGGAAGGCCGTGCGAGACTGGGCGCTGCAAACTCTCACTCCGCTCTTG
CGGCACCCCTCCGGCATGGGAGCGCAGGGCGGCAACACCATCGGAGCCGG
GACAGCGGCGTTGCATCCGCCGCAGCGAAAGCTCTCGGCAGCGGAGAAAG
AGAAGTCGGCGGACGAGATCCGGGCGATCGACCTGTCCGCCGCGCTTGGG
GTAGCGGAGGCGCTGTTGCAGGCCGCTCGTGAC
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