mRNA_Ecto-sp13_S_contig16068.4436.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16068.4436.1
Unique NamemRNA_Ecto-sp13_S_contig16068.4436.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16068.4436.1 vs. uniprot
Match: A0A6H5JSB0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSB0_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 1.020e-27
Identity = 60/72 (83.33%), Postives = 61/72 (84.72%), Query Frame = -1 
Query:  154 GYYIFNEPLKKAVAEVKGKEAGERAAAESWGRSRSGIDTKGSDGGSVVSSKSSNVDGGKNAPPAVAGAGNGR 369
            GYYIFNEPLK AVAEVK KEAGERAAA   GRS SGIDTKGSDG S VSSK SNV+GGKN PPAVAG GNGR
Sbjct:   34 GYYIFNEPLKTAVAEVKAKEAGERAAAGGGGRSCSGIDTKGSDG-SGVSSKKSNVEGGKNGPPAVAGVGNGR 104
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16068.4436.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JSB0_9PHAE1.020e-2783.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16068contigEcto-sp13_S_contig16068:879..1250 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size373
Hectar predicted targeting categoryother localisation
Exons1
Cds size372
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462848.4160564-CDS-Ecto-sp13_S_contig16068:878..12501681462848.4160564-CDS-Ecto-sp13_S_contig16068:878..1250Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16068 879..1250 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16068.4436.1prot_Ecto-sp13_S_contig16068.4436.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16068 879..1250 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16068.4436.1

>prot_Ecto-sp13_S_contig16068.4436.1 ID=prot_Ecto-sp13_S_contig16068.4436.1|Name=mRNA_Ecto-sp13_S_contig16068.4436.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=124bp
LPHKTKSLFQEGLPYPTRAPLRHSNNRNQHQHPFENPSTRHAPKRSKSLS
LSAIPRACHRRWSILTTIYVGTFAADDAAAITTLGVNTAATSTPAFRCGA
LPCFLAFDLGNRLFERLVEDVVA*
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mRNA from alignment at Ecto-sp13_S_contig16068:879..1250+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16068.4436.1 ID=mRNA_Ecto-sp13_S_contig16068.4436.1|Name=mRNA_Ecto-sp13_S_contig16068.4436.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=372bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16068:879..1250+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTGCCGCATAAAACCAAATCGTTGTTTCAAGAAGGCCTTCCATATCCGAC
ACGAGCGCCATTACGACATAGTAACAATAGAAACCAACACCAACATCCAT
TCGAAAACCCTTCCACAAGACACGCCCCGAAGCGATCAAAATCTCTCTCG
CTATCTGCCATTCCCCGCGCCTGCCACCGCCGGTGGAGCATTCTTACCAC
CATCTACGTTGGAACTTTTGCTGCTGACGACGCTGCCGCCATCACTACCC
TTGGTGTCAATACCGCTGCGACTTCTACCCCAGCTTTCCGCTGCGGCGCG
CTCCCCTGCTTCCTTGCCTTTGACCTCGGCAACCGCCTTTTTGAGCGGCT
CGTTGAAGATGTAGTAGCCTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16068:879..1250+

>mRNA_Ecto-sp13_S_contig16068.4436.1 ID=mRNA_Ecto-sp13_S_contig16068.4436.1|Name=mRNA_Ecto-sp13_S_contig16068.4436.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=372bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16068:879..1250+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTGCCGCATAAAACCAAATCGTTGTTTCAAGAAGGCCTTCCATATCCGAC
ACGAGCGCCATTACGACATAGTAACAATAGAAACCAACACCAACATCCAT
TCGAAAACCCTTCCACAAGACACGCCCCGAAGCGATCAAAATCTCTCTCG
CTATCTGCCATTCCCCGCGCCTGCCACCGCCGGTGGAGCATTCTTACCAC
CATCTACGTTGGAACTTTTGCTGCTGACGACGCTGCCGCCATCACTACCC
TTGGTGTCAATACCGCTGCGACTTCTACCCCAGCTTTCCGCTGCGGCGCG
CTCCCCTGCTTCCTTGCCTTTGACCTCGGCAACCGCCTTTTTGAGCGGCT
CGTTGAAGATGTAGTAGCCTAG
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