mRNA_Ecto-sp13_S_contig16066.4435.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16066.4435.1
Unique NamemRNA_Ecto-sp13_S_contig16066.4435.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig16066.4435.1 vs. uniprot
Match: A0A6H5KTC5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTC5_9PHAE)

HSP 1 Score: 556 bits (1432), Expect = 5.280e-194
Identity = 269/276 (97.46%), Postives = 270/276 (97.83%), Query Frame = 1
Query:    1 RRRGGSWNWGNLGRSLIGAVLGPGAVGGEDGGGGGDRASEARTRRGRFRELTPHEMHQTPEGKFSVSVWRKNKQDAEPVEVSVGVYETAYEGQRAAESFSPPLWQEPGKDSRCAVCDSTFGYVLKRRHHCRNCGRLVCSACAERFWPRSMLPPTYNVDTSEKKVRVCSTCYGAGEDFRKACLSGSEEGAMAAFSTGCVNLRVPYTIYHNELPVHCAASGGNLNILAWLVDDRCCPLFLDREKKIALGDSRRLSVMGAAAASGHVQIMRYLAFTQVC 828
            RRRGGSWNWGNLGRSLIGAVLGPGAVG EDGGGGGDRAS A  RRGRFRELTPHEMHQTPEGKFSVSVWRKNKQDAEPVEVSVGVY+TAYEGQRAAESFSPPLWQEPGKDSRCAVCDSTFGYVLKRRHHCRNCGRLVCSACAERFWPRSMLPPTYNVDTSEKKVRVCSTCY AGEDFRKACLSGSEEGAMAAFSTGCVNLRVPYTIYHNELPVHCAASGGNLNILAWLVDDRCCPLFLDREKKIALGDSRRLSVMGAAAASGHVQIMRYLAFTQ C
Sbjct:  270 RRRGGSWNWGNLGRSLIGAVLGPGAVGREDGGGGGDRASVAGARRGRFRELTPHEMHQTPEGKFSVSVWRKNKQDAEPVEVSVGVYDTAYEGQRAAESFSPPLWQEPGKDSRCAVCDSTFGYVLKRRHHCRNCGRLVCSACAERFWPRSMLPPTYNVDTSEKKVRVCSTCYVAGEDFRKACLSGSEEGAMAAFSTGCVNLRVPYTIYHNELPVHCAASGGNLNILAWLVDDRCCPLFLDREKKIALGDSRRLSVMGAAAASGHVQIMRYLAFTQGC 545          
BLAST of mRNA_Ecto-sp13_S_contig16066.4435.1 vs. uniprot
Match: D8LDM9_ECTSI (FYVE-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDM9_ECTSI)

HSP 1 Score: 404 bits (1037), Expect = 1.240e-140
Identity = 186/188 (98.94%), Postives = 188/188 (100.00%), Query Frame = 1
Query:  166 MHQTPEGKFSVSVWRKNKQDAEPVEVSVGVYETAYEGQRAAESFSPPLWQEPGKDSRCAVCDSTFGYVLKRRHHCRNCGRLVCSACAERFWPRSMLPPTYNVDTSEKKVRVCSTCYGAGEDFRKACLSGSEEGAMAAFSTGCVNLRVPYTIYHNELPVHCAASGGNLNILAWLVDDRCCPLFLDREKK 729
            MHQTPEGKFSVSVWRKNKQDAEPVEVSVGVY+TAYEGQRAAESFSPPLWQEPGKDSRCAVCDSTFGYVLKRRHHCRNCGRLVCSACAERFWPRSMLPPTYNVDTSEKKVRVCS+CYGAGEDFRKACLSGSEEGAMAAFSTGCVNLRVPYTIYHNELPVHCAASGGNLNILAWLVDDRCCPLFLDREKK
Sbjct:    1 MHQTPEGKFSVSVWRKNKQDAEPVEVSVGVYDTAYEGQRAAESFSPPLWQEPGKDSRCAVCDSTFGYVLKRRHHCRNCGRLVCSACAERFWPRSMLPPTYNVDTSEKKVRVCSSCYGAGEDFRKACLSGSEEGAMAAFSTGCVNLRVPYTIYHNELPVHCAASGGNLNILAWLVDDRCCPLFLDREKK 188          
BLAST of mRNA_Ecto-sp13_S_contig16066.4435.1 vs. uniprot
Match: A0A6H5KUU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUU5_9PHAE)

HSP 1 Score: 264 bits (675), Expect = 3.550e-78
Identity = 125/229 (54.59%), Postives = 165/229 (72.05%), Query Frame = 1
Query:  145 RELTPHEMHQTPEGK--FSVSVWRKNKQDAEPVEVSVGVYETAYEGQRAAESFSPPLWQEPGKDSRCAVCDSTFGYVLKRR-HHCRNCGRLVCSACAERFWPRSMLPPTYNVDTSEKKVRVCSTCYGAGEDFRKACLSGSEEGAMAAFSTGCVNLRVPYTIYHNELPVHCAASGGNLNILAWLVDDRCCPLFLDREKKIALGDSRRLSVMGAAAASGHVQIMRYLAFTQ 822
            RELTPH + +   G   F+++V++ NKQD  P  +  G + T+YE  RAAE+FS P+W EP  +S CA C S+F  V +RR HHCRNCGRLVC+ CA RFWP+ MLP +Y   ++E++VRVC TCY  G+ FR+A L GS +GAM A+ TGCVNLR P++    ELPVHCAA+GGN++++ WLV+DRCCP+F+D EK +   D    SVM AAA SG V++MRYL+FTQ
Sbjct:  525 RELTPHLVEELDGGGGGFTLTVFKYNKQDQVPTPLVCGKFATSYEADRAAETFSSPVWHEPTPNSTCAECQSSFRPVFQRRKHHCRNCGRLVCTTCAWRFWPKHMLPHSYRTSSTERRVRVCRTCYSVGKSFRRALLRGSYQGAMEAYGTGCVNLRAPFS--DRELPVHCAAAGGNVSLMMWLVEDRCCPIFMDDEKTMPHLDGAGRSVMAAAADSGRVEMMRYLSFTQ 751          
BLAST of mRNA_Ecto-sp13_S_contig16066.4435.1 vs. uniprot
Match: D7FYF4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYF4_ECTSI)

HSP 1 Score: 262 bits (669), Expect = 9.910e-78
Identity = 125/229 (54.59%), Postives = 163/229 (71.18%), Query Frame = 1
Query:  145 RELTPHEMHQTPEGK--FSVSVWRKNKQDAEPVEVSVGVYETAYEGQRAAESFSPPLWQEPGKDSRCAVCDSTFGYVL-KRRHHCRNCGRLVCSACAERFWPRSMLPPTYNVDTSEKKVRVCSTCYGAGEDFRKACLSGSEEGAMAAFSTGCVNLRVPYTIYHNELPVHCAASGGNLNILAWLVDDRCCPLFLDREKKIALGDSRRLSVMGAAAASGHVQIMRYLAFTQ 822
            RELTPH + +   G   F+++V++ NKQD  P  +  G + T+YE  RAAE+FS P+W EP  +S CA C S F  VL +RRHHCRNCGRLVC+ CA RFWP+ MLP +Y   ++E++VRVC TCY  G+ FR+A L GS +GAM A  TGCVNLR P++    ELPVHCAA+GGN++++ WL++DRCCP+F+D EK +   D    SVM AAA SG V++MRYL FTQ
Sbjct:  455 RELTPHLVEELDGGGGGFTLTVFKYNKQDQVPTPLVCGKFATSYEADRAAEAFSSPVWHEPTPNSTCAECQSVFRPVLQRRRHHCRNCGRLVCTTCALRFWPKHMLPHSYRTSSTERRVRVCRTCYSVGKAFRRALLRGSYQGAMEAHGTGCVNLRAPFS--DRELPVHCAAAGGNVSLMMWLLEDRCCPIFMDDEKTMPHLDGAGRSVMAAAADSGRVEMMRYLTFTQ 681          
BLAST of mRNA_Ecto-sp13_S_contig16066.4435.1 vs. uniprot
Match: A0A836CC14_9STRA (FYVE-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC14_9STRA)

HSP 1 Score: 211 bits (537), Expect = 1.910e-64
Identity = 99/188 (52.66%), Postives = 127/188 (67.55%), Query Frame = 1
Query:  247 VGVYETAYEGQRAAESFSPPLWQEPGKDSRCAVCDSTFGYVLKRRHHCRNCGRLVCSACAERFWPRSMLPPTYNVDTSEKKVRVCSTCYGAGEDFRKACLSGSEEGAMAAFSTGCVNLRVPYTIYHNELPVHCAASGGNLNILAWLVDDRCCPLFLDREKKIALGDSRRLSVMGAAAASGHVQIMRYL 810
            +GVYET    + A ++F+ P  Q     + CA+C S FG + +RRHHCRNCGR VC ACA+  WP SMLP TY+    E+K R+C TC    E FR A L+G +  A AA+  GCVNLR PY+IY N LPVHCAA GG++ +LAWL++++ CPLF D  + IALG+ R+ SVM  AA +GH  IMRYL
Sbjct:   10 LGVYETPDAAEEACKAFAVPKKQNA---ALCALCKSYFGMLSRRRHHCRNCGRAVCDACAKTSWPSSMLPFTYSAAKQERKCRICDTCAETNEAFRAALLAGDDAAARAAYRRGCVNLRCPYSIYLNGLPVHCAAEGGSMALLAWLLEEKHCPLFKDLSRTIALGNGRKESVMAVAAQNGHTHIMRYL 194          
BLAST of mRNA_Ecto-sp13_S_contig16066.4435.1 vs. uniprot
Match: A0A6H5KTY3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTY3_9PHAE)

HSP 1 Score: 180 bits (457), Expect = 3.560e-48
Identity = 87/179 (48.60%), Postives = 113/179 (63.13%), Query Frame = 1
Query:  334 RCAVCDSTFGYVLK--------------RRHHCRNCGRLVCSACAERFWPRSMLPPTYNVDTSEKKVRVCSTCYGAGEDFRKACLSGSEEGAMAAFSTGCVNLRVPYTIYHNELPVHCAASGGNLNILAWLVDDRCCPLFLDREKKIALGDSRRLSVMGAAAASGHVQIMRYLAFTQVC 828
            RCA+C ST   V+                  +CRNC R+VC  C   FW R+M+PP Y  +    ++RVC TC  A E FR A L G  E AM+A+STGCVNL  PYT++H ELPVHCAA+GGN+ +L+WLV++  CP+F D +KK+ + D R L+V+GAAA +G VQ MRYL   Q C
Sbjct:  494 RCALCMSTNVSVVHPPGGNNRGNRXXXXXNKNCRNCWRVVCDDCVGTFWARNMVPPRYASERDGFRMRVCKTCNAAMEAFRTALLLGRAEDAMSAYSTGCVNLDRPYTVFHGELPVHCAAAGGNVGLLSWLVEELGCPIFTDSDKKVPIKDLRSLTVLGAAAVNGQVQAMRYLVNQQGC 672          
BLAST of mRNA_Ecto-sp13_S_contig16066.4435.1 vs. uniprot
Match: A0A7S3YF48_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YF48_HETAK)

HSP 1 Score: 173 bits (439), Expect = 3.710e-48
Identity = 89/189 (47.09%), Postives = 117/189 (61.90%), Query Frame = 1
Query:  247 VGVYETAYEGQRAAESFSPPLWQEPGKDSRCAVCDSTFGYVLKRRHHCRNCGRLVCSACAERFWPRSMLPPTYNVDTSEKKVRVCSTCYGAGEDFRKACLSGSEEGAMAAFSTGCVNLRVPYTIYHNELPVHCAASGGNLNILAWLVDDRCCPLFLDREKKIALGDSRRL-SVMGAAAASGHVQIMRYL 810
            VGVY++  E   AAE++SPPLW++      C  C + F  +L+   HCRNCGR+VC  CA   WP  MLP TY     EKK RVC  C  A EDFR A   G   G  AA++TG VNLR PYT++  E PVHCAA+GG+L +LAWLVD+R   +   + K+  L  S  + S M  AA +G++++MR+L
Sbjct:   52 VGVYDSRDEAVAAAEAYSPPLWEQKRGGLGCGNCGAKFA-LLRPEKHCRNCGRVVCRECARAHWPPRMLPATYLDGAGEKKARVCRGCQWAMEDFRAALRRGDAPGVRAAYATGVVNLRTPYTVHGGEYPVHCAAAGGSLPLLAWLVDERGAFVRDPQSKQRPLFASDGITSCMSLAAVNGNLEMMRWL 239          
BLAST of mRNA_Ecto-sp13_S_contig16066.4435.1 vs. uniprot
Match: D7FYF5_ECTSI (FYVE-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYF5_ECTSI)

HSP 1 Score: 160 bits (404), Expect = 4.660e-41
Identity = 77/164 (46.95%), Postives = 102/164 (62.20%), Query Frame = 1
Query:  334 RCAVCDSTF--------------GYVLKRRHHCRNCGRLVCSACAERFWPRSMLPPTYNVDTSEKKVRVCSTCYGAGEDFRKACLSGSEEGAMAAFSTGCVNLRVPYTIYHNELPVHCAASGGNLNILAWLVDDRCCPLFLDREKKIALGDSRRLSVMGAAAAS 783
            RCA+C ST               G       +CRNC R+VC  C   FW R+M+PP Y  +    ++RVC TC  A E FR A L G  E AM+A+STGCVNL  PYT++H ELPVHCAA+GGN+ +L+WLV++  C +F D +KK+ + D R L+V+GAAA +
Sbjct:  492 RCALCMSTNVSAVHPPGGNTRRNGNSSSSDKNCRNCWRVVCDDCIGTFWARNMVPPRYASEGDGFRMRVCKTCNAAMEAFRTALLLGRAEDAMSAYSTGCVNLDRPYTVFHGELPVHCAAAGGNVGLLSWLVEELGCSIFTDSDKKVPIRDLRSLTVLGAAAVN 655          
BLAST of mRNA_Ecto-sp13_S_contig16066.4435.1 vs. uniprot
Match: A0A7S4QY11_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QY11_9STRA)

HSP 1 Score: 124 bits (310), Expect = 2.930e-28
Identity = 71/197 (36.04%), Postives = 104/197 (52.79%), Query Frame = 1
Query:  256 YETAYEGQRAAESFSPPLWQEPGKDSRCAVCDSTFGYVLKRRHHCRNCGRLVCSACAERFWPRSMLPPTYNVDTSEKKVRVCSTCYGAGEDFRKACLSGSEEGAMAAFSTGCVNLRVPYTIYHNEL--PVHCAASGGNLNILAWLVDDRCCPLFL---------DREKKIAL-GDSRRLSVMGAAAASGHVQIMRYL 810
            + T  E + +A + +PP      +   CA+C+  F  V +R  HCRNCG  +C++C++  W    +P TYN+  +EK V+VC TC+     FR+  L G  E A++ F TG +NLR  +     E   PVHCAA GGN+ +L WLVD   CP+            R+   AL   S+  +V+  A  +  V I+RYL
Sbjct:  381 FHTEREARESAYANAPPKMTPFAESPHCALCNGKFA-VFRRPSHCRNCGVCICASCSK-TWSHKSIPETYNMK-NEKNVKVCKTCHFLSYKFRQTLLDGHYEEAVSLFHTGNINLRCQFYSTDGEASYPVHCAAEGGNIQLLQWLVDIHFCPIKQAGSGSKGKKSRKASTALIQTSKGRTVLDIAMTNQRVDILRYL 574          
BLAST of mRNA_Ecto-sp13_S_contig16066.4435.1 vs. uniprot
Match: A0A6S8XUE4_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A6S8XUE4_9STRA)

HSP 1 Score: 124 bits (310), Expect = 3.140e-28
Identity = 65/171 (38.01%), Postives = 98/171 (57.31%), Query Frame = 1
Query:  256 YETAYEGQRAAESFSPPLWQEPGKDSRCAVCDSTFGYVLKRRHHCRNCGRLVCSACAERFWPRSMLPPTYNVDTSEKKVRVCSTCYGAGEDFRKACLSGSEEGAMAAFSTGCVNLRVPYTIYHNE---LPVHCAASGGNLNILAWLVDDRCCPLFLDREKKIALGDSRRLS 759
            ++T +E + +A + +P       +   C +CDS F  V +R  HCRNCG  +CS+C+   W +  +P TYN+  +E  V+VC +C      FR++ L  + E A+  ++TG VNLR P+     E   LP+HCAA GG+L++L WLVD   CP+     KKI  G++R  S
Sbjct:  470 FQTEHEARESAYANAPAKMIPFDEARSCFICDSKFA-VFRRASHCRNCGVCICSSCSV-SWSKVCIPETYNIK-NENVVKVCKSCSSLSRMFRRSLLDANCEDALTIYNTGNVNLRCPFMTSKGEEAMLPIHCAAEGGSLDLLRWLVDIHFCPI-----KKIRTGNNRNKS 632          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16066.4435.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KTC5_9PHAE5.280e-19497.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LDM9_ECTSI1.240e-14098.94FYVE-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KUU5_9PHAE3.550e-7854.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYF4_ECTSI9.910e-7854.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CC14_9STRA1.910e-6452.66FYVE-type domain-containing protein n=1 Tax=Tribon... [more]
A0A6H5KTY3_9PHAE3.560e-4848.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3YF48_HETAK3.710e-4847.09Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
D7FYF5_ECTSI4.660e-4146.95FYVE-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A7S4QY11_9STRA2.930e-2836.04Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A6S8XUE4_9STRA3.140e-2838.01Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16066contigEcto-sp13_S_contig16066:7..3999 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score404.8
Seed ortholog evalue3.2e-110
Seed eggNOG ortholog2880.D8LDM9
Model size831
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.lipid binding
EggNOG OGsKOG1729@1,KOG1729@2759
Cds size831
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16066.4435.1prot_Ecto-sp13_S_contig16066.4435.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16066 7..3999 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462848.328047-CDS-Ecto-sp13_S_contig16066:6..1081681462848.328047-CDS-Ecto-sp13_S_contig16066:6..108Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16066 7..108 -
1681462848.3471675-CDS-Ecto-sp13_S_contig16066:743..8421681462848.3471675-CDS-Ecto-sp13_S_contig16066:743..842Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16066 744..842 -
1681462848.360563-CDS-Ecto-sp13_S_contig16066:1531..16851681462848.360563-CDS-Ecto-sp13_S_contig16066:1531..1685Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16066 1532..1685 -
1681462848.36988-CDS-Ecto-sp13_S_contig16066:2050..21911681462848.36988-CDS-Ecto-sp13_S_contig16066:2050..2191Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16066 2051..2191 -
1681462848.3783817-CDS-Ecto-sp13_S_contig16066:3054..31671681462848.3783817-CDS-Ecto-sp13_S_contig16066:3054..3167Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16066 3055..3167 -
1681462848.3898377-CDS-Ecto-sp13_S_contig16066:3777..39991681462848.3898377-CDS-Ecto-sp13_S_contig16066:3777..3999Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16066 3778..3999 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16066.4435.1

>prot_Ecto-sp13_S_contig16066.4435.1 ID=prot_Ecto-sp13_S_contig16066.4435.1|Name=mRNA_Ecto-sp13_S_contig16066.4435.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=277bp
RRRGGSWNWGNLGRSLIGAVLGPGAVGGEDGGGGGDRASEARTRRGRFRE
LTPHEMHQTPEGKFSVSVWRKNKQDAEPVEVSVGVYETAYEGQRAAESFS
PPLWQEPGKDSRCAVCDSTFGYVLKRRHHCRNCGRLVCSACAERFWPRSM
LPPTYNVDTSEKKVRVCSTCYGAGEDFRKACLSGSEEGAMAAFSTGCVNL
RVPYTIYHNELPVHCAASGGNLNILAWLVDDRCCPLFLDREKKIALGDSR
RLSVMGAAAASGHVQIMRYLAFTQVC*
back to top

mRNA from alignment at Ecto-sp13_S_contig16066:7..3999-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16066.4435.1 ID=mRNA_Ecto-sp13_S_contig16066.4435.1|Name=mRNA_Ecto-sp13_S_contig16066.4435.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3993bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16066:7..3999- (Ectocarpus species13 EcNAP12_S_4_19m)
CGCCGGCGCGGGGGCTCTTGGAACTGGGGGAACCTTGGGCGATCGCTCAT TGGGGCCGTGCTAGGCCCCGGGGCGGTAGGAGGGGAGGATGGAGGAGGGG GCGGCGACCGGGCGTCGGAGGCGAGGACGCGGAGGGGGAGGTTCCGCGAG CTCACCCCGCACGAGATGCACCAGACCCCAGAGGGGAAGTTCAGTGTTTC CGTGTGGAGGAAGAACAAACAGGTATGTGGTGTGTGTCGTAAAGCTTGGA GTGTTTCAGGTCGAGTGTGCGTGTGTGCCTGCAAGTGTGTTTATGTGCGG GGCACGAGGGACTAGACTGGAGGCGCGTGTGTGGGTGTGAGTGCATGCTT TCGGGTGTGCACGCATTCGTCGGTGCGGCGACGGAAGCAAGAAGGACGCT TGCCGCTGTGATAGAGAGAAATCGTAAATCAATATGAAAGTGGCCTGTTG ACGGCGGCGTGCATATAGACCTGTCTCCCGGTAATGGCCGATGAAATCGC GTGACAGAATAGCGCCGTGTGCCCGGCATAAGGCCGGGAAAATCCCATGG CACTGGTGAATGCAACCTGAGACCGCTACTGTTCTGTCTGGGTTTGGTAC TGCGTAGTCGTGCTAGAATGGTGGCCTCTTTCATAAAATGCGAAGTTGCT AGCATTTGCGGGAGATCGCTCCAGCTCCAATTGTAGCTAGATACCTGCTA GGCGGTGGCCTGAAGCCATACGTTCGGACGGCGATGAAGACGGCGCACGA ACGCTCGTGGCACGTCTCTCCATGATCTTTGGCGTGACGTGCTTTCTTTG AAACATGTGCGAAACCGAAAACAAACAATCAGGATGCGGAGCCTGTTGAG GTGTCGGTGGGAGTGTACGAGACCGCGTACGAGGGGCAGAGGGCCGCAGA ATCGTTTTCTCCACCGCTCTGGCAGGAGCCCGGAAAGGATTCGAGGTTGG TTCGTTTCGTTGGTAATTGTTTCTTAAAAAGTCGGACGCGTGTACGTATG CATAAGTTAGACCAAACAAGAAAACAGGAACGTCCTGCCAGTAAAAACCG ATGATCAAGGTGAGATTCGAACTCACGCTCTTCCGAACTAGTGCCTTAAA CTAGCGCCTTAGACCGCTCGGCCACTTGACCTCGTTTTTCACCCTTGTAC AGATGGTGCTGCGAAGTCCTTATTGCCTAGCTAAAAACTCTGGAGGTAAT GCTCGTGTTCGGGTTGGACACAAGATGGGAGGCATTCGCGTTTTCGGATT TTTGCGCATCCAACTTTGTACGCCGGCAGTGCTTTGCTGGTGTTTGTTGT GACTGCCAGTGTATGAAAAAGCCAGGCAGTCAGAGGAGAAGGTTTGGTGT GTAAAGATGTGTCGTGATTTGCACGGTTGGGTGGCATTTACGATCGTTGT CTCCAGGTCTGCCTTGTCAAATAGCTTGCTTCTGTTACTGGCAACAAAAA TGCATGGAAATGTGGTCGGCAAATGTTACTTAGCGTGTCAAAGAAAGCTC CATACTGAGCTGTTTCATTTCATCTTGATGAGGCTGATGTTCATGACGGA ATGCAATTCAAGTGTGCCCGGCGGCGACAGCCCAAGAGGGGGCGCAACCG CAGCTTTGGAGCTCGAGCACCTGGTCTTCGTTGTTGGACCTTTCTGTCCC CCTGGAGTAGGCGTTTTCCTTAGGCCTGCCGACGCCACCCCCCCCCTGAT AGATGCCTCTATGCTTCGAAGTATTATTTTTGCTCGCCTTGTCAACCATG ATGGGTCAATCGGTTCGTGAAGCTTTTTCTTTGCTCCCGCCATCACTGCC CTCGCCAGATGCGCGGTGTGCGACTCTACGTTCGGGTACGTGCTCAAGAG GAGGCACCACTGCCGCAACTGCGGCCGCCTGGTGTGCTCCGCGTGCGCCG AGAGGTTCTGGCCGCGGAGCATGCTCCCGCCGACGTACAACGTAGACACG TGAGCCTCGTCTCCCGTCGTTCGTTTAGTGTACATGGTGTCGGCTCTTGT TGTTTTTGAGTGTCGAGCTAAAAAGGCGTCTCTGTTCTGGAAAGGATAAA GTCGGCAGTGTGGCATCAGCACGTCTCTTCGTTGGGGTAGCGCTATTTTG ACCAAATATCTTCCTCTCTATCTTGTCACTCAAGCCCTGCTTTCATTACG TCATTGTCCCTCTCTCTCTCTCTCTCCTTGACTCTGCCCCCCCCCCTATT CCATCTCTCCGTCTCGCTCCCTCTATTTCTGTTTTTTTTTCTCCTCGTCT CTCCGCTACGGCCCCGAAAATCCAAACCAAACGGCAACGATTGCACCGCC TCGCTGGAGAGCAGAAGCGAAAAGAAGGTCCGGGTGTGCAGCACTTGCTA CGGCGCCGGGGAGGATTTCAGGAAGGCGTGTTTGTCAGGGTCGGAGGAAG GGGCCATGGCGGCGTTCAGCACCGGCTGCGTTAACCTTCGAGTGCCGTAC ACGATCTACCACAACGAGGTATGCATGCTCCCATGCACATTTGTGACTGA TGCTGGTACATTTTGCGGGGTGAAATTGCACGTTTTCAGGAGAAAACGTG TGGTCCTGTTTTGGTGATCTCATGGCAAAAGAGGACGCGGCAAACGGGCC TATGCCTCCCTACCCAAAAGTGAGAGACGAGGTGAGATGACCCCCCTACT GTAGCGCAAGGTCTTGTGGTTTTTTCTCTAGACCTCGTACGCACTTGTGC CGCGGGGTGCCGTAGAATCATGACGTCTTCTTGTGTATACCCAGCGTTCT TTGGAGGAGACCCAGATCCTTGATAGTCCCGCAAGTCGTGTACGACGAGC ATGGTATACCGGTGCGTCTTTTCTTGGGCTTTTTGTGTCTCTCTTTGCGC AGCCGTCAGTCTCAAGACATATTCTGTCGCTGCCCATTTCCCGGCCGTTG CGAAATGCGCGAGACGGACGAGTAAAGTCCCCGTTGCAGCCGACAGCGAG TGCTGCATTTTCTTTCAACGGCAGTGTGTCAGTTTGTTAGCTCTTTCTCC GTTAAAAACCCATCCAGCGGTTCTCTGTTTCTCCCGAGATTTCTGGTCCG TAGACCCGCACGAGAAGGATTGCGGCAAAGCCGAAAGTCAGGAAGCTGTT CCCAACAACTCTCTTTCGGCAATTGTACCCGCTGCTCCCGTTCGCGGCCT TGTCCAGCTGCCTGTTCATTGCGCCGCCTCCGGTGGAAACCTGAACATCC TGGCCTGGCTGGTAGATGACCGATGCTGCCCTCTCTTCCTCGACCGTGAG AAGAAGGTAAGTCGTGGTTGATCTCGTCGTCGTCGTTGTTGTTGTTGGTG TTGTTGTTGGTGATGGTGGTGATGTTGGGTGCTTGCGGTGGGTTTGGTGG CATGTCAACATGCGTTGTCTGTTTTTGAAGCGATCACATGCCAAGTGGGT GGAACGCACAGAATGGGGATGCATAAACGTGCGAAAATGTGGAAAACTGT CGATGGGGTCAGTACTGACCATCTTCATCAGTAGAATGGAGTTTTCTTAA GCCTGTATGAGGTGACCCTCGCGTATTCGGGAGGAGAGTGCGATTGAGGC TGTACTCGGGCCTTGCAAGCTGCGAGTACCCTCAAAAAGCGTGAACTTGT AGACGAAATACAGCACGCTAGAGAACAACTGATCTCCAATTCACCTCTCG GAAATCTGTGTTGAACTGATTCTCCGCGTGGGGGTCAAGTGACACCTACG TCGAACCGACGGTTTCTATTGTAGATATCGGTGACAATTTTTTTATTTTT GACGTCATTTCTCATGTAGACCCTGATGAATGATCCGAAGTATCACGTTT CTTCATTGATTAAAAGCTCATTTTTACAGAACCTCCTCCCCCCCTGCCGC ACCCCCTTTCGCCGCGTTCTGGCGCACTTGTGGATGTTCAGATTGCCCTG GGTGACAGCCGTCGTTTGAGCGTGATGGGTGCTGCCGCCGCGTCCGGACA CGTTCAAATCATGCGGTACCTCGCATTCACACAGGTCTGTTAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16066:7..3999-

>mRNA_Ecto-sp13_S_contig16066.4435.1 ID=mRNA_Ecto-sp13_S_contig16066.4435.1|Name=mRNA_Ecto-sp13_S_contig16066.4435.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=831bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16066:7..3999- (Ectocarpus species13 EcNAP12_S_4_19m)
CGCCGGCGCGGGGGCTCTTGGAACTGGGGGAACCTTGGGCGATCGCTCAT
TGGGGCCGTGCTAGGCCCCGGGGCGGTAGGAGGGGAGGATGGAGGAGGGG
GCGGCGACCGGGCGTCGGAGGCGAGGACGCGGAGGGGGAGGTTCCGCGAG
CTCACCCCGCACGAGATGCACCAGACCCCAGAGGGGAAGTTCAGTGTTTC
CGTGTGGAGGAAGAACAAACAGGATGCGGAGCCTGTTGAGGTGTCGGTGG
GAGTGTACGAGACCGCGTACGAGGGGCAGAGGGCCGCAGAATCGTTTTCT
CCACCGCTCTGGCAGGAGCCCGGAAAGGATTCGAGATGCGCGGTGTGCGA
CTCTACGTTCGGGTACGTGCTCAAGAGGAGGCACCACTGCCGCAACTGCG
GCCGCCTGGTGTGCTCCGCGTGCGCCGAGAGGTTCTGGCCGCGGAGCATG
CTCCCGCCGACGTACAACGTAGACACAAGCGAAAAGAAGGTCCGGGTGTG
CAGCACTTGCTACGGCGCCGGGGAGGATTTCAGGAAGGCGTGTTTGTCAG
GGTCGGAGGAAGGGGCCATGGCGGCGTTCAGCACCGGCTGCGTTAACCTT
CGAGTGCCGTACACGATCTACCACAACGAGCTGCCTGTTCATTGCGCCGC
CTCCGGTGGAAACCTGAACATCCTGGCCTGGCTGGTAGATGACCGATGCT
GCCCTCTCTTCCTCGACCGTGAGAAGAAGATTGCCCTGGGTGACAGCCGT
CGTTTGAGCGTGATGGGTGCTGCCGCCGCGTCCGGACACGTTCAAATCAT
GCGGTACCTCGCATTCACACAGGTCTGTTAG
back to top