mRNA_Ecto-sp13_S_contig16062.4434.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16062.4434.1
Unique NamemRNA_Ecto-sp13_S_contig16062.4434.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16062.4434.1 vs. uniprot
Match: D8LRG7_ECTSI (Sideroflexin 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRG7_ECTSI)

HSP 1 Score: 145 bits (366), Expect = 2.770e-39
Identity = 82/85 (96.47%), Postives = 84/85 (98.82%), Query Frame = 1 
Query:    1 PEHPLEAASAAAFPPSVHGSAASQNDNDDARSLQDAGSRNSKSPTFVTQAGRAAAANRSSLEQLTERDIGAAGGAAGGGFVVVGS 255
            PEHPLEAASAAAFPPSVHGSAASQ+DNDDARSLQDAGS N+KSPTFVTQAGRAAAANRSSLEQLTERDIGAAGGAAGGGFVVVGS
Sbjct:  416 PEHPLEAASAAAFPPSVHGSAASQSDNDDARSLQDAGSSNNKSPTFVTQAGRAAAANRSSLEQLTERDIGAAGGAAGGGFVVVGS 500
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16062.4434.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LRG7_ECTSI2.770e-3996.47Sideroflexin 2 n=1 Tax=Ectocarpus siliculosus TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16062contigEcto-sp13_S_contig16062:929..1194 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score147.5
Seed ortholog evalue2.9e-33
Seed eggNOG ortholog2880.D8LRG7
Preferred nameCCDC176
Model size268
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005815,GO:0005856,GO:0005929,GO:0006996,GO:0008150,GO:0009987,GO:0015630,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0036064,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044446,GO:0044458,GO:0044463,GO:0044464,GO:0044782,GO:0060271,GO:0070925,GO:0071840,GO:0120025,GO:0120031,GO:0120036,GO:0120038
Exons1
EggNOG free text desc.motile cilium assembly
EggNOG OGs28J0W@1,2QRCW@2759
Ec32 ortholog descriptionsideroflexin 2
Ec32 orthologEc-18_004470.1
Cds size264
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462848.294514-CDS-Ecto-sp13_S_contig16062:928..11921681462848.294514-CDS-Ecto-sp13_S_contig16062:928..1192Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16062 929..1192 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16062.4434.1prot_Ecto-sp13_S_contig16062.4434.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16062 929..1192 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16062.4434.1

>prot_Ecto-sp13_S_contig16062.4434.1 ID=prot_Ecto-sp13_S_contig16062.4434.1|Name=mRNA_Ecto-sp13_S_contig16062.4434.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=88bp
PEHPLEAASAAAFPPSVHGSAASQNDNDDARSLQDAGSRNSKSPTFVTQA
GRAAAANRSSLEQLTERDIGAAGGAAGGGFVVVGSESS
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mRNA from alignment at Ecto-sp13_S_contig16062:929..1194+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16062.4434.1 ID=mRNA_Ecto-sp13_S_contig16062.4434.1|Name=mRNA_Ecto-sp13_S_contig16062.4434.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=266bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16062:929..1194+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCGGAACACCCGCTCGAAGCAGCCAGCGCAGCTGCCTTCCCTCCTTCCGT
CCATGGCAGCGCCGCCAGCCAAAACGACAACGACGATGCACGCTCGTTAC
AAGACGCAGGAAGCCGCAACAGCAAGAGCCCAACATTCGTGACACAAGCG
GGCAGAGCGGCGGCGGCCAATAGGTCGAGCCTCGAGCAGCTGACCGAGCG
AGATATCGGGGCGGCGGGGGGGGCGGCTGGGGGTGGTTTCGTCGTTGTGG
GTAGCGAGTCTTCCGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16062:929..1194+

>mRNA_Ecto-sp13_S_contig16062.4434.1 ID=mRNA_Ecto-sp13_S_contig16062.4434.1|Name=mRNA_Ecto-sp13_S_contig16062.4434.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=264bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16062:929..1194+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCGGAACACCCGCTCGAAGCAGCCAGCGCAGCTGCCTTCCCTCCTTCCGT
CCATGGCAGCGCCGCCAGCCAAAACGACAACGACGATGCACGCTCGTTAC
AAGACGCAGGAAGCCGCAACAGCAAGAGCCCAACATTCGTGACACAAGCG
GGCAGAGCGGCGGCGGCCAATAGGTCGAGCCTCGAGCAGCTGACCGAGCG
AGATATCGGGGCGGCGGGGGGGGCGGCTGGGGGTGGTTTCGTCGTTGTGG
GTAGCGAGTCTTCC
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