mRNA_Ecto-sp13_S_contig16061.4433.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16061.4433.1
Unique NamemRNA_Ecto-sp13_S_contig16061.4433.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16061.4433.1 vs. uniprot
Match: D8LRI0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRI0_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 5.630e-31
Identity = 78/153 (50.98%), Postives = 91/153 (59.48%), Query Frame = 1 
Query:    1 MVLIVPGVVWTGIMVTKFGIPKVLVWKALERCIRPDENRELETGG-DEEAGDDGRDVPELGQAVHNDEQQEEQEPLVGATNRTLGILMRILSRVFNTGSTMPRTLRMIYRLWCSRRWHQGEGRAPT-----LQSQSFTGYNSLDPWDSG-GKG 438
            MV+IV G VW GIMVTK  I KVLVWKALERC+RPDENRE +T   DEEA DDG DVPEL Q V +DE++E+Q+P++GAT RTLG L                               QG+GR PT     LQ +S TG NSLD    G G+G
Sbjct:    1 MVIIVSGAVWAGIMVTKCVISKVLVWKALERCVRPDENREHKTNSSDEEARDDGEDVPELAQEV-DDEEEEDQQPVIGATKRTLGTLK------------------------------QGDGREPTSRVDRLQPESSTGDNSLDSRSDGSGEG 122
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16061.4433.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LRI0_ECTSI5.630e-3150.98Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16061contigEcto-sp13_S_contig16061:548..1818 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size499
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-18_003580.1
Cds size486
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462848.2221158-CDS-Ecto-sp13_S_contig16061:547..6631681462848.2221158-CDS-Ecto-sp13_S_contig16061:547..663Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16061 548..663 +
1681462848.232878-CDS-Ecto-sp13_S_contig16061:917..9841681462848.232878-CDS-Ecto-sp13_S_contig16061:917..984Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16061 918..984 +
1681462848.2425077-CDS-Ecto-sp13_S_contig16061:1158..13301681462848.2425077-CDS-Ecto-sp13_S_contig16061:1158..1330Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16061 1159..1330 +
1681462848.2525733-CDS-Ecto-sp13_S_contig16061:1674..18051681462848.2525733-CDS-Ecto-sp13_S_contig16061:1674..1805Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16061 1675..1805 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462848.268859-UTR-Ecto-sp13_S_contig16061:1805..18181681462848.268859-UTR-Ecto-sp13_S_contig16061:1805..1818Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16061 1806..1818 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16061.4433.1prot_Ecto-sp13_S_contig16061.4433.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16061 548..1805 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16061.4433.1

>prot_Ecto-sp13_S_contig16061.4433.1 ID=prot_Ecto-sp13_S_contig16061.4433.1|Name=mRNA_Ecto-sp13_S_contig16061.4433.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=162bp
MVLIVPGVVWTGIMVTKFGIPKVLVWKALERCIRPDENRELETGGDEEAG
DDGRDVPELGQAVHNDEQQEEQEPLVGATNRTLGILMRILSRVFNTGSTM
PRTLRMIYRLWCSRRWHQGEGRAPTLQSQSFTGYNSLDPWDSGGKGVEVT
GYFVALYAHYV*
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mRNA from alignment at Ecto-sp13_S_contig16061:548..1818+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16061.4433.1 ID=mRNA_Ecto-sp13_S_contig16061.4433.1|Name=mRNA_Ecto-sp13_S_contig16061.4433.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1271bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16061:548..1818+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTACTCATTGTGCCCGGAGTTGTGTGGACCGGCATCATGGTGACCAA
ATTCGGAATCCCGAAGGTCTTGGTATGGAAGGCCCTTGAACGGTGCATTC
GACCGGACGAGAACAGGTGAGACACCCCCTTCGATGCATGCCGTGATTCA
ATGCAGGCTCAAGTAGTGGCACAAATAGTTTGGAAAAATGAACGATTCAT
TGTAGACATCCCTGCACTGGGAGCGAGGGTCGATGTTAGAGAGAGAACAT
CTCACAACAAGCGCACCACGATCCTGATTTTCTTACTACTAACAACCCAC
TCAACATACAAACCATGTGCTGCAAGTGCCACATGATACGCGGTTATGCA
TGTGTCATTAACTTCGGCAGGGAACTCGAGACCGGCGGTGACGAAGAAGC
AGGCGATGATGGCCGAGATGTGCCAGAGCTTGGGCAGGTATGCTAAATAG
AGTTTATGGTTGCTAAAGGGCACCACTTGCGGGGATTCCAACTTCATTCG
TGCCTCGTAGGTGGTCTAGTTTGCTGTCCTCCCCGTTGGTCTGCTGCTTA
TACAGTTTTATTAACTTATCCCCAGTCTGCACCCGTCTGGTTTACGGGGC
CCCCGCAACAGGCAGTTCACAACGACGAGCAGCAGGAGGAGCAGGAGCCC
CTGGTTGGCGCCACGAACAGGACTCTCGGCATACTGATGCGGATCCTCAG
CCGGGTCTTTAACACCGGCAGCACGATGCCCCGAACCCTGCGCATGATTT
ACCGCTTGTGGTGCTCCAGGCGCTGGCACCAGGGTGAGAGTCGAACGAAG
AATGTTGAGGTCACAAAGAAAGCAAGAATCGTGCCAAAAACCTGGCAAAG
GCATGTACTGTAGTCTGTGAAGCGCTGTCTGTCTCTCCTCGTGGGTATTG
TTGCATACGCGAATGCATGATATTTCTCTCCTCAACCACACGAAATTATG
CGATCACTGACAGTATTTCCATGAAAAGTCCATGTAGAGAGGTCAGCTTT
CAGAATTAGATTTCTACACCTTCGGAAAAGCCAGGGTGAAACGTTCTGAA
ACATGATGGGCATCACCCCTACCCTACTCATCTATTCGTACCGTGGCACA
ACTTCAACCGTGCACGTATTGTACCAGGTGAGGGCCGGGCGCCGACACTG
CAGTCTCAGTCCTTTACCGGGTACAACTCGCTGGATCCATGGGACAGCGG
CGGCAAGGGTGTCGAGGTCACTGGCTATTTTGTTGCTCTATATGCTCATT
ATGTTTGAGATGTTGTTTCTA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16061:548..1818+

>mRNA_Ecto-sp13_S_contig16061.4433.1 ID=mRNA_Ecto-sp13_S_contig16061.4433.1|Name=mRNA_Ecto-sp13_S_contig16061.4433.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=486bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16061:548..1818+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTACTCATTGTGCCCGGAGTTGTGTGGACCGGCATCATGGTGACCAA
ATTCGGAATCCCGAAGGTCTTGGTATGGAAGGCCCTTGAACGGTGCATTC
GACCGGACGAGAACAGGGAACTCGAGACCGGCGGTGACGAAGAAGCAGGC
GATGATGGCCGAGATGTGCCAGAGCTTGGGCAGGCAGTTCACAACGACGA
GCAGCAGGAGGAGCAGGAGCCCCTGGTTGGCGCCACGAACAGGACTCTCG
GCATACTGATGCGGATCCTCAGCCGGGTCTTTAACACCGGCAGCACGATG
CCCCGAACCCTGCGCATGATTTACCGCTTGTGGTGCTCCAGGCGCTGGCA
CCAGGGTGAGGGCCGGGCGCCGACACTGCAGTCTCAGTCCTTTACCGGGT
ACAACTCGCTGGATCCATGGGACAGCGGCGGCAAGGGTGTCGAGGTCACT
GGCTATTTTGTTGCTCTATATGCTCATTATGTTTGA
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