mRNA_Ecto-sp13_S_contig1606.4431.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1606.4431.1
Unique NamemRNA_Ecto-sp13_S_contig1606.4431.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1606.4431.1 vs. uniprot
Match: D7G599_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G599_ECTSI)

HSP 1 Score: 195 bits (496), Expect = 6.080e-56
Identity = 96/98 (97.96%), Postives = 97/98 (98.98%), Query Frame = 2 
Query:    2 LGKDGKMIVKVTPEKTEEEKARLPWYRKVYEDRLGKHLPSKRLGDSIEARREAYAYSRHFTAELDGRQDELNGALTKALKGQTKLEFITEDYHYPGAY 295
            LGKDGKMIVKVTPEKTEEEKARLPWYRKVYEDRLGKHLPSKRLGDSIEARREAYAYSRHFTAE+DGRQDELN ALTKALKGQTKLEFITEDYHYPGAY
Sbjct:  321 LGKDGKMIVKVTPEKTEEEKARLPWYRKVYEDRLGKHLPSKRLGDSIEARREAYAYSRHFTAEIDGRQDELNRALTKALKGQTKLEFITEDYHYPGAY 418
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1606.4431.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G599_ECTSI6.080e-5697.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1606contigEcto-sp13_S_contig1606:14562..15318 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size298
Hectar predicted targeting categoryother localisation
Exons3
Cds size297
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462847.8434792-CDS-Ecto-sp13_S_contig1606:14561..145921681462847.8434792-CDS-Ecto-sp13_S_contig1606:14561..14592Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1606 14562..14592 +
1681462847.853819-CDS-Ecto-sp13_S_contig1606:14750..149601681462847.853819-CDS-Ecto-sp13_S_contig1606:14750..14960Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1606 14751..14960 +
1681462847.8667462-CDS-Ecto-sp13_S_contig1606:15261..153171681462847.8667462-CDS-Ecto-sp13_S_contig1606:15261..15317Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1606 15262..15317 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1606.4431.1prot_Ecto-sp13_S_contig1606.4431.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1606 14562..15317 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1606.4431.1

>prot_Ecto-sp13_S_contig1606.4431.1 ID=prot_Ecto-sp13_S_contig1606.4431.1|Name=mRNA_Ecto-sp13_S_contig1606.4431.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=99bp
ARKGRENDCESDTREDGRREGETPVVPQSLRRSPGQTPSKQAAWGQHRSA
EGSLRVFETLHGRARRQTRRAQWRSHEGVKGSNEARVYYGGLPLSRSLQ
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mRNA from alignment at Ecto-sp13_S_contig1606:14562..15318+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1606.4431.1 ID=mRNA_Ecto-sp13_S_contig1606.4431.1|Name=mRNA_Ecto-sp13_S_contig1606.4431.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=757bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1606:14562..15318+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCTAGGAAAGGACGGGAAAATGATTGTGAAAGTGAGCTATGAATAAGAAT
CGATGGAACGATCTTTTCCAGGTGGAGCGAGGGCTTGGGTACCCTCCTGT
GCGTCGCCCTTCTGGTGTTGCGATAGCCCCTATGTGAACACTCGCACAGG
AAACACGGCTTGGTTGTCCTCCCATATTCCGTTCTCCAGGTGACACCAGA
GAAGACGGAAGAAGAGAAGGCGAGACTCCCGTGGTACCGCAAAGTTTACG
AAGATCGCCTGGGCAAACACCTTCCAAGCAAGCGGCTTGGGGACAGCATC
GAAGCGCGGAGGGAAGCCTACGCGTATTCGAGACACTTCACGGCAGAGCT
CGACGGCAGACAAGACGAGCTCAATGGCGCTCTCACGAAGGCGTTAAAGG
CACGACTTGGCGGTGAAACTATCATGACTTTGGCAACGTTTGTATGTAGG
CACGTTTTTTCCGAGCAATATTTGCAGGTGTAGACCATGCACCACGCTTT
CTGAGCAGCAGTAGAGGATCGGTAGAGGAAGAATTGTTGTACAACTCGGT
TGCCGTCGAGCTCACAGGTAACCGCGCTTGCGCGACGGTGTGGTTTGCGA
CGGAGTAACTGTGTGGGGGGTTAGGTGGAAACCAGTCTTTGATCTTCCCC
TCCATGAGCGCGGTTTAACCGTATAAGTTTCGTCGTCCTGACATATACAG
GGTCAAACGAAGCTAGAGTTTATTACGGAGGACTACCACTATCCCGGAGC
TTACAAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1606:14562..15318+

>mRNA_Ecto-sp13_S_contig1606.4431.1 ID=mRNA_Ecto-sp13_S_contig1606.4431.1|Name=mRNA_Ecto-sp13_S_contig1606.4431.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=297bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1606:14562..15318+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCTAGGAAAGGACGGGAAAATGATTGTGAAAGTGACACCAGAGAAGACGG
AAGAAGAGAAGGCGAGACTCCCGTGGTACCGCAAAGTTTACGAAGATCGC
CTGGGCAAACACCTTCCAAGCAAGCGGCTTGGGGACAGCATCGAAGCGCG
GAGGGAAGCCTACGCGTATTCGAGACACTTCACGGCAGAGCTCGACGGCA
GACAAGACGAGCTCAATGGCGCTCTCACGAAGGCGTTAAAGGGTCAAACG
AAGCTAGAGTTTATTACGGAGGACTACCACTATCCCGGAGCTTACAA
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