mRNA_Ecto-sp13_S_contig16055.4427.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16055.4427.1
Unique NamemRNA_Ecto-sp13_S_contig16055.4427.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16055.4427.1 vs. uniprot
Match: A0A6H5JK81_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK81_9PHAE)

HSP 1 Score: 263 bits (671), Expect = 2.240e-76
Identity = 203/232 (87.50%), Postives = 207/232 (89.22%), Query Frame = 1 
Query:   85 RFDEADIGDTRASLSARFFEAADEPTSAXXXXXXXXXXXXAGATRANFPERRNKVKEGVPKKA---APERGGRAAESAITGAGRTRGEGGARPAAEAEEATSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDTAAPTCAGKRKVGAESGEERREGESPHKAXXXXXXXXASREGWRSIAEDCSHSRVNTGGTTGAAGAALKQEVNADGKGEKEDTQEGHSGE 771
            RFDEADIGDTRASLSARFFEAADEPTSAXXXXXXXXXXXXAGATRANFPERRNKVKEG+PKKA   +PERGGR AESAITGAGRTRGEGGAR  AEAEEATS   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   DDTAAPT AGKRKVGAESGEERREGESPHKA        ASREG RSIAEDCSHSRV+TGGTT AAGA LKQEVNADGKGEKE TQEG+SGE
Sbjct:    3 RFDEADIGDTRASLSARFFEAADEPTSAXXXXXXXXXXXXAGATRANFPERRNKVKEGIPKKATEASPERGGRVAESAITGAGRTRGEGGARLTAEAEEATSEGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAADDTAAPTSAGKRKVGAESGEERREGESPHKAAAAGSGGGASREGRRSIAEDCSHSRVDTGGTTAAAGAELKQEVNADGKGEKEGTQEGNSGE 234
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BLAST of mRNA_Ecto-sp13_S_contig16055.4427.1 vs. uniprot
Match: D8LI61_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI61_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 1.590e-24
Identity = 55/56 (98.21%), Postives = 56/56 (100.00%), Query Frame = 1 
Query:    1 ASTEIPLEFRSQRVRHKEYKRRGPPLSSRFDEADIGDTRASLSARFFEAADEPTSA 168
            AS+EIPLEFRSQRVRHKEYKRRGPPLSSRFDEADIGDTRASLSARFFEAADEPTSA
Sbjct:   29 ASSEIPLEFRSQRVRHKEYKRRGPPLSSRFDEADIGDTRASLSARFFEAADEPTSA 84
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16055.4427.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JK81_9PHAE2.240e-7687.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LI61_ECTSI1.590e-2498.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16055contigEcto-sp13_S_contig16055:1377..2216 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size840
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-26_005340.1
Cds size840
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462847.757603-CDS-Ecto-sp13_S_contig16055:1376..22161681462847.757603-CDS-Ecto-sp13_S_contig16055:1376..2216Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16055 1377..2216 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16055.4427.1prot_Ecto-sp13_S_contig16055.4427.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16055 1377..2216 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16055.4427.1

>prot_Ecto-sp13_S_contig16055.4427.1 ID=prot_Ecto-sp13_S_contig16055.4427.1|Name=mRNA_Ecto-sp13_S_contig16055.4427.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=280bp
ASTEIPLEFRSQRVRHKEYKRRGPPLSSRFDEADIGDTRASLSARFFEAA
DEPTSASPPPPPPPPPPAAGATRANFPERRNKVKEGVPKKAAPERGGRAA
ESAITGAGRTRGEGGARPAAEAEEATSEGTAATAATAAAAGAESSAGTAD
AGEAAAAAEGRGTAADDTAAPTCAGKRKVGAESGEERREGESPHKAAAAG
GGGGASREGWRSIAEDCSHSRVNTGGTTGAAGAALKQEVNADGKGEKEDT
QEGHSGEGGGGGDNGGADGDRERKEPQRV*
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mRNA from alignment at Ecto-sp13_S_contig16055:1377..2216+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16055.4427.1 ID=mRNA_Ecto-sp13_S_contig16055.4427.1|Name=mRNA_Ecto-sp13_S_contig16055.4427.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=840bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16055:1377..2216+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCTTCGACCGAAATTCCGCTTGAGTTCCGGAGTCAACGCGTGAGACACAA
GGAGTACAAGCGGCGGGGCCCCCCTTTGAGCAGCCGATTCGACGAGGCGG
ACATCGGCGACACGCGCGCTTCGCTGTCGGCAAGGTTTTTCGAGGCTGCC
GACGAACCCACATCGGCGTCACCGCCGCCGCCGCCGCCGCCGCCACCCCC
CGCCGCAGGGGCCACAAGAGCGAACTTCCCGGAGCGGCGGAACAAGGTAA
AGGAGGGAGTTCCGAAGAAGGCAGCGCCCGAAAGGGGCGGCCGAGCGGCA
GAGTCCGCGATAACAGGCGCGGGGAGGACGAGGGGGGAGGGGGGAGCTAG
ACCAGCTGCAGAGGCGGAGGAAGCCACCTCCGAAGGTACAGCGGCGACAG
CAGCGACAGCGGCGGCGGCGGGAGCCGAGTCATCTGCCGGCACCGCTGAC
GCCGGAGAAGCTGCTGCCGCCGCCGAAGGCCGCGGTACTGCGGCTGACGA
CACCGCGGCTCCGACTTGCGCTGGGAAGCGGAAGGTGGGGGCGGAGAGCG
GAGAAGAGCGGAGGGAGGGCGAGTCGCCACACAAGGCCGCGGCTGCCGGC
GGCGGCGGCGGTGCCTCCAGGGAAGGTTGGAGGTCGATCGCCGAGGATTG
TTCACACTCGAGGGTAAACACGGGGGGCACAACGGGTGCGGCTGGGGCGG
CATTGAAGCAGGAGGTTAACGCGGACGGGAAAGGGGAGAAGGAGGACACG
CAGGAGGGCCACAGCGGAGAGGGTGGGGGGGGGGGCGACAACGGTGGAGC
CGACGGTGACAGAGAGAGAAAAGAGCCCCAACGAGTTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16055:1377..2216+

>mRNA_Ecto-sp13_S_contig16055.4427.1 ID=mRNA_Ecto-sp13_S_contig16055.4427.1|Name=mRNA_Ecto-sp13_S_contig16055.4427.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=840bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16055:1377..2216+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCTTCGACCGAAATTCCGCTTGAGTTCCGGAGTCAACGCGTGAGACACAA
GGAGTACAAGCGGCGGGGCCCCCCTTTGAGCAGCCGATTCGACGAGGCGG
ACATCGGCGACACGCGCGCTTCGCTGTCGGCAAGGTTTTTCGAGGCTGCC
GACGAACCCACATCGGCGTCACCGCCGCCGCCGCCGCCGCCGCCACCCCC
CGCCGCAGGGGCCACAAGAGCGAACTTCCCGGAGCGGCGGAACAAGGTAA
AGGAGGGAGTTCCGAAGAAGGCAGCGCCCGAAAGGGGCGGCCGAGCGGCA
GAGTCCGCGATAACAGGCGCGGGGAGGACGAGGGGGGAGGGGGGAGCTAG
ACCAGCTGCAGAGGCGGAGGAAGCCACCTCCGAAGGTACAGCGGCGACAG
CAGCGACAGCGGCGGCGGCGGGAGCCGAGTCATCTGCCGGCACCGCTGAC
GCCGGAGAAGCTGCTGCCGCCGCCGAAGGCCGCGGTACTGCGGCTGACGA
CACCGCGGCTCCGACTTGCGCTGGGAAGCGGAAGGTGGGGGCGGAGAGCG
GAGAAGAGCGGAGGGAGGGCGAGTCGCCACACAAGGCCGCGGCTGCCGGC
GGCGGCGGCGGTGCCTCCAGGGAAGGTTGGAGGTCGATCGCCGAGGATTG
TTCACACTCGAGGGTAAACACGGGGGGCACAACGGGTGCGGCTGGGGCGG
CATTGAAGCAGGAGGTTAACGCGGACGGGAAAGGGGAGAAGGAGGACACG
CAGGAGGGCCACAGCGGAGAGGGTGGGGGGGGGGGCGACAACGGTGGAGC
CGACGGTGACAGAGAGAGAAAAGAGCCCCAACGAGTTTGA
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