mRNA_Ecto-sp13_S_contig1605.4425.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1605.4425.1
Unique NamemRNA_Ecto-sp13_S_contig1605.4425.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1605.4425.1 vs. uniprot
Match: D7G435_ECTSI (Alpha-(1,6)-fucosyltransferase, family GT23 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G435_ECTSI)

HSP 1 Score: 602 bits (1551), Expect = 1.410e-206
Identity = 300/320 (93.75%), Postives = 307/320 (95.94%), Query Frame = 1
Query:    1 LSDMLNAWVYALSVEKWSDMTVVVDENQMKQVDCGEESGGGAQAGWDCIFKPMSHLCTFPSAESWKEYMVSKDLPEADLVEAARLDQDAVRFHPEEIVASLEGSGVDHIAALAAMAKYLWSNVTPWLQADVDFVTRASPSDVFQESPFLGLHIRRGDKVSQGE-ASMYLCKEYLEAAVEFFEGDDSQLSVGDIKGIWVASDEPKVIAKVKKIAPDYLPNVSEEDIFWASGGVEGGPEIERTATRTDKETYADFVYTFADLQQLTAADLFVGTFSSNMGRLLVLLRESIGLKDRASAVSIDGPWRAGRRRRRAMRGARGPE 957
            +++MLNAWVYALSVEKWSDMTVVV ENQMK VDCGEESGG AQ GWDCIFKPM HLCTFPSAESWKEYMVSKDLPEA+LVE ARLDQDAVRFHPEEIVASLEGSGVDHIAALAAMAKYLWSNVTPWLQADVDFVTRASPSDVFQESPFLGLHIRRGDKV+ G  ASMYLCKEYLEAAVEF EGDDSQLSVGDIKGIWVASDEPKVIAKVK+IAPDYLPNVSE+DIFWASGGVEGGPEI RTATRTDKETYADFVYT ADLQQLTAADLFVGTFSSNMGRLLVLLRESIGLKDRASAVSIDGPWRAGRRRRRAMRG RGPE
Sbjct:  139 INNMLNAWVYALSVEKWSDMTVVVGENQMKWVDCGEESGGEAQTGWDCIFKPMPHLCTFPSAESWKEYMVSKDLPEAELVEVARLDQDAVRFHPEEIVASLEGSGVDHIAALAAMAKYLWSNVTPWLQADVDFVTRASPSDVFQESPFLGLHIRRGDKVTHGRRASMYLCKEYLEAAVEFLEGDDSQLSVGDIKGIWVASDEPKVIAKVKQIAPDYLPNVSEDDIFWASGGVEGGPEIGRTATRTDKETYADFVYTLADLQQLTAADLFVGTFSSNMGRLLVLLRESIGLKDRASAVSIDGPWRAGRRRRRAMRGVRGPE 458          
BLAST of mRNA_Ecto-sp13_S_contig1605.4425.1 vs. uniprot
Match: A0A6H5JTL0_9PHAE (GT23 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTL0_9PHAE)

HSP 1 Score: 592 bits (1525), Expect = 8.940e-203
Identity = 297/319 (93.10%), Postives = 308/319 (96.55%), Query Frame = 1
Query:    1 LSDMLNAWVYALSVEKWSDMTVVVDENQMKQVDCGEESGGGAQAGWDCIFKPMSHLCTFPSAESWKEYMVSKDLPEADLVEAARLDQDAVRFHPEEIVASLEGSGVDHIAALAAMAKYLWSNVTPWLQADVDFVTRASPSDVFQESPFLGLHIRRGDKVSQGEASMYLCKEYLEAAVEFFEGDDSQLSVGDIKGIWVASDEPKVIAKVKKIAPDYLPNVSEEDIFWASGGVEGGPEIERTATRTDKETYADFVYTFADLQQLTAADLFVGTFSSNMGRLLVLLRESIGLKDRASAVSIDGPWRAGRRRRRAMRGARGPE 957
            +++MLNAWVYALSVEKWSDMTVVVDENQMKQVDC EESGG AQAGWDC+FKPM HLCTFPSAE   E+MVSK LP+ADLVEAARLDQDAVRFHPEEIVASLEGSGVDHIAALAAMAKYLWSNVTPWLQADVDFVTRASPSDVFQESPFLGLHIRRGDKVSQGEASMYLC+EYLE AVEF EG+DSQLSVGDIKGIWVASDEPKVIAKVK+IA DYLPNVSE DIFWASGGVEGGPEIERTATRTD+ETYADFVYTFADLQQLTAADLFVGTFSSN+GRLLVLLRESIGLKDRASAVSIDGPWRAGRRRRRAMRGARGPE
Sbjct:  135 VNNMLNAWVYALSVEKWSDMTVVVDENQMKQVDCEEESGGEAQAGWDCLFKPMPHLCTFPSAE---EHMVSKGLPKADLVEAARLDQDAVRFHPEEIVASLEGSGVDHIAALAAMAKYLWSNVTPWLQADVDFVTRASPSDVFQESPFLGLHIRRGDKVSQGEASMYLCEEYLETAVEFLEGNDSQLSVGDIKGIWVASDEPKVIAKVKQIAQDYLPNVSEGDIFWASGGVEGGPEIERTATRTDQETYADFVYTFADLQQLTAADLFVGTFSSNIGRLLVLLRESIGLKDRASAVSIDGPWRAGRRRRRAMRGARGPE 450          
BLAST of mRNA_Ecto-sp13_S_contig1605.4425.1 vs. uniprot
Match: A0A6H5LR29_9PHAE (GT23 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LR29_9PHAE)

HSP 1 Score: 179 bits (454), Expect = 5.310e-47
Identity = 94/185 (50.81%), Postives = 115/185 (62.16%), Query Frame = 1
Query:  343 MAKYLWSNVTPWLQADVDFVTRASPSDVFQESPFLGLHIRRGDKVSQGEASMYLCKEYLEAAVEFFEGDDSQLSVGDIKGIWVASDEPKVIAKVKKIAPDYLPNVSEEDIFWASGGVEGGPEIERTATRTDKETYADFVYTFADLQQLTAADLFVGTFSSNMGRLLVLLRESIGLKDRASAVSID 897
            MA+ LW N+TPWLQ DV         DVF+  PF+GLH+RRGDKV +GEA     KEYL AA  FF+   SQ    DI+ IWVASD+ KV+ +V+ IA  Y PNV +EDI W SGG  GG       T T  + Y  FV  FADL+ L A  LFVGT++SN+ RL+ LLRE I    R S +S+D
Sbjct:  105 MARLLWKNLTPWLQEDVRKALERPDLDVFRRKPFVGLHVRRGDKVGEGEAQKVETKEYLSAAARFFDNKASQ-DKQDIEAIWVASDDHKVVEEVRAIARQYFPNVLDEDIVWVSGGARGGA----VTTHTKSQGYQGFVMVFADLKMLAAGSLFVGTYTSNVSRLVALLREGIHGHARDSCISLD 284          
BLAST of mRNA_Ecto-sp13_S_contig1605.4425.1 vs. uniprot
Match: D8LU00_ECTSI (Similar to putative alpha-6-fucosyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU00_ECTSI)

HSP 1 Score: 107 bits (268), Expect = 2.090e-23
Identity = 60/164 (36.59%), Postives = 97/164 (59.15%), Query Frame = 1
Query:  442 FLGLHIRRGDKVSQGEASMYLCKEYLEAAVEFFEGDDSQLSVGDIKGIWVASDEPKVIAKVKKIAPDYLPNVSEEDIFWASGGVEGGPEIERTATRTDKETYADFVYTFADLQQLTAADLFVGTFSSNMGRLLVLLRESIGLKDRASAVSIDGP-WRAGRRRRR 930
            ++GLHIRR DK +  E      K YL  AV +     + ++  +I GIWV+SD+  V  +VK++A ++ P ++   + +    V GG  ++      D+ +Y   VY  A+L+ L  + +F GTFSSN+GR++ L+R+++ + D  SAVS+D P W AGR+R R
Sbjct:    6 YVGLHIRRTDKAN--EVQPVKTKAYLAKAVNYLASPTNDMAATNITGIWVSSDDEAVFDEVKQLASEFFPGIAPNAVLY----VTGGKPVQLMRGAADRNSYEAMVYLRAELEMLAGSAVFSGTFSSNVGRMVALMRKTLNMPDE-SAVSVDFPAWFAGRQRHR 162          
BLAST of mRNA_Ecto-sp13_S_contig1605.4425.1 vs. uniprot
Match: A0A6J1SG56_FRAOC (alpha-(1,6)-fucosyltransferase n=1 Tax=Frankliniella occidentalis TaxID=133901 RepID=A0A6J1SG56_FRAOC)

HSP 1 Score: 82.0 bits (201), Expect = 2.060e-12
Identity = 72/284 (25.35%), Postives = 122/284 (42.96%), Query Frame = 1
Query:  127 QAGWDCIFKPMSHLCTFPSAESWKEYMVSKDLPEADLVEAARLDQDAVRFHPEEIVASLEGSGVDHIAALAAMAKYLWSNVTPWLQADVDFVTRASP----------SDVFQESPFLGLHIRRGDKVSQGEASMYLCKEYLEAAVEFFEGDDSQLSVGDIKGIWVASDEPKVIAKVKKIAPDYLPNVSEEDIFWASGGVEGGPEIERTATRTDKETYADFVYTFADLQQLTAADLFVGTFSSNMGRLLVLLRESIGLKDRASAVSIDGPWRAGRRRRRAMRGAR 948
            + GW+ IFKP+S  C     +S   +    D     L     L     ++ P  + A L             +A+     +T W+   + ++ R  P          + +  + P +G+HIRR DKV   EA+ +   EY+ A  E+F+   S   + D + I++ASD+PKVIA+ +   PDY               + G P+I +TA    + +         D+  L+  D  V TFSS + R+   + +S+ +   AS  S+D  +  G +   + R A+
Sbjct:  250 KGGWEEIFKPVSDTCLSSEGDSLANWPGKPDTQVLTLPIIDSLLPPRSQYLPPAVPADLA----------PRLARIHGQPITWWVGQFLKYLLRPQPVISELLLNTQNKLGFKGPIVGIHIRRTDKVGT-EAAFHPLDEYMPAVAEWFDQQISNGKIIDKRRIFLASDDPKVIAEARSKYPDYE--------------ILGDPDIAKTAAIGSRYSDRSLYGIIVDIHFLSRCDFLVCTFSSQVCRVAYEIMQSLHVDASASYRSLDDIYYYGGQNAHSWRAAQ 508          
BLAST of mRNA_Ecto-sp13_S_contig1605.4425.1 vs. uniprot
Match: A0A482VZE0_9CUCU (Alpha-(1,6)-fucosyltransferase n=1 Tax=Asbolus verrucosus TaxID=1661398 RepID=A0A482VZE0_9CUCU)

HSP 1 Score: 75.9 bits (185), Expect = 1.340e-10
Identity = 70/248 (28.23%), Postives = 112/248 (45.16%), Query Frame = 1
Query:  127 QAGWDCIFKPMSHLCTFPSAESWKEYMVSKDLPEADLVEAARLDQDAVR--FHPEEIVASLEGSGVDHIAALAAMAKYLWSNVTPWLQADVDFVTRASPSD--VFQES--------PFLGLHIRRGDKVSQGEASMYLCKEYLEAAVEFFEGDDSQLSVGDIKGIWVASDEPKVIAKVKKIAPDYLPNVSEEDIFWASGGVEGGPEIERTATRTDKETYADFVYTFADLQQLTAADLFVGTFSSNMGR 834
            +AGWD IFKP+S  C  PS ES   +  + D     +V    +D  + R  F P  I   L             + +     +  W+   + ++ R  P    V QE+        P +G+H+RR DKV   EA+ +  +EY+ A  E+++  + + +V D + I++A+D+PKVIA  K   P Y               V G P I +TA  + + + +       D+  L+ +D  V TFSS + R
Sbjct:  264 KAGWDEIFKPISDNCVDPSGESVSNWPGNSD---TQVVNLPIIDSLSPRPPFLPLAIPEDLS----------PRLTRLHGDPIVWWVGQILKYLLRPQPKTAAVIQETMTHMGFKRPIVGVHVRRTDKVGT-EAAYHGIEEYMTAVEEYYKQLELKETV-DKRRIYLATDDPKVIADAKSKYPQYE--------------VLGDPTISKTAAISTRYSDSSLFGIINDIHMLSMSDYLVCTFSSQVSR 482          
BLAST of mRNA_Ecto-sp13_S_contig1605.4425.1 vs. uniprot
Match: A0A1B6KQG1_9HEMI (Alpha-(1,6)-fucosyltransferase n=3 Tax=Cicadellinae TaxID=33370 RepID=A0A1B6KQG1_9HEMI)

HSP 1 Score: 74.3 bits (181), Expect = 5.350e-10
Identity = 69/257 (26.85%), Postives = 118/257 (45.91%), Query Frame = 1
Query:  127 QAGWDCIFKPMSHLCTFPSAESWKEYMVSKDLPEADLVEAARLDQ-DAVRFHPEEIVASLEGSGVDHIAALAAMAKYLWSNVTPWLQADVDFVTRASPSDV-----------FQESPFLGLHIRRGDKVSQGEASMYLCKEYLEAAVEFFEGDDSQLSVGDIKGIWVASDEPKVIAKVKKIAPDYLPNVSEEDIFWASGGVEGGPEIERTATRTDKETYADFVYTFADLQQLTAADLFVGTFSSNMGRLLVLLRESI 861
            + GWD +F+P+S  CT  +A +      + + P     +   L   D+V   P  +  ++       IA L      +W     W+   + F+ R  P+             FQ  P +G+HIRR DKV   EA+ +  +EY++A  E+++      +V ++K I++ASD+PKV A++KK  PDY               V G P + ++A    + + + F     D+  L+  D  V TFSS + R+   + +S+
Sbjct:  262 RGGWDEVFQPVSDTCTDTTAAT-----STSNWPGTASTQVVVLPIIDSVSPRPPYLPLAVPQDLAPRIARLHG-DPIVW-----WVGQFLKFLLRPQPNTADLLHTAAERFSFQR-PIVGIHIRRTDKVGT-EAAFHSVEEYMDAVEEYYKQLSLYQTV-EVKRIYLASDDPKVFAEIKKKYPDYE--------------VLGDPTVAKSAAVATRYSDSSFNGIVMDIHFLSLCDYLVCTFSSQVCRVAYEIMQSL 490          
BLAST of mRNA_Ecto-sp13_S_contig1605.4425.1 vs. uniprot
Match: A0A0A1TTM2_LEPSM (Alpha1,6 fucosyltransferase n=2 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=A0A0A1TTM2_LEPSM)

HSP 1 Score: 73.6 bits (179), Expect = 9.170e-10
Identity = 72/278 (25.90%), Postives = 122/278 (43.88%), Query Frame = 1
Query:  127 QAGWDCIFKPMSHLCT---------FP-SAESW--KEYMVSKDLPEADLVEAARLDQDAVRFHPEEIVASLEGSGVDHIAALAAMAKYLW-SNVTPWL---QADVDFVTRASPSDVF--QESPFLGLHIRRGDKVSQGEASMYLCKEYLEAAVEFFEGDDSQLSVGDIKGIWVASDEPKVIAKVKKIAPDYLPNVSEEDIFWASGGVEGGPEIERTATRTDKETYADFVYTFADLQQLTAADLFVGTFSSNMGRLLVLLRESIGLKDRASAVSIDGPW 906
            +AG++ +FKP+S  C           P S  SW  KE  V+ D+P  D          +V   P+ +  S+       I  L       W S V  ++   Q D+  +  ++  D     +SP++G+H+RR DKV   EA+ +  +EY+E   E F+  D+ L     + ++VASD+P+V+ + +K  P Y         F+      G   + R+A  + + +         D+  L+ AD  V TFSS + R+   + ++          S+D  W
Sbjct:  250 RAGFENVFKPLSETCQRIPEVLQGELPLSRSSWPGKEDTVNVDIPIVD----------SVNPRPKHLPPSIPKEIASRIIRLHGDPIVWWISEVLRYILRPQEDLQVLLNSTEEDKLPRDKSPYVGIHVRRTDKVGT-EAAFHPVEEYMEYVEERFKYLDASLGSNVERRVYVASDDPRVLVECRKKFPHYS--------FY------GDATVARSAAVSSRYSSDSLKGVITDIHLLSKADYLVCTFSSQVCRIAYEILQNRFPDGHDRFKSLDDIW 502          
BLAST of mRNA_Ecto-sp13_S_contig1605.4425.1 vs. uniprot
Match: A0A6L2PGD2_COPFO (Alpha-(1,6)-fucosyltransferase n=4 Tax=Termitoidae TaxID=1912919 RepID=A0A6L2PGD2_COPFO)

HSP 1 Score: 73.6 bits (179), Expect = 9.530e-10
Identity = 67/255 (26.27%), Postives = 124/255 (48.63%), Query Frame = 1
Query:  127 QAGWDCIFKPMSHLCTFPSAESWKEYMVSKDLPEADLVEAARLDQDAVRFHPEEIVASLEGSGVDHIAALAAMAKYLWSNVTPWLQADVDFVTRA--SPSDVFQES--------PFLGLHIRRGDKVSQGEASMYLCKEYLEAAVEFFEGDDSQLSVGDIKGIWVASDEPKVIAKVKKIAPDYLPNVSEEDIFWASGGVEGGPEIERTATRTDKETYADFVYTFADLQQLTAADLFVGTFSSNMGRLLVLLRESI 861
            +AGW+ +F P+S  CT PS ++   +   KD     +VE   +D  + R  P  +  ++       +A L      +W     W+   + F+ R   + S++ QE+        P +G+HIRR DKV   EA+ +  +EY+ A  E++   + +  V D + +++ASD+PKVIA+ ++  P+Y       DI          P++ +TA  + + + +       D+  L+ +D  V TFSS + R+   + +++
Sbjct:  275 KAGWEEVFLPVSRTCTDPSGQTHSHWPGRKD---TQVVELPIVDSLSPR--PPYLPLAVPKDLAPRLARLHG-DPIVW-----WIGQFLKFLLRPQEATSNMIQEASIKRDFKRPVVGVHIRRTDKVGT-EAAFHPLEEYMAAVDEYYNLLEMKQKV-DRRRVYLASDDPKVIAEARRKYPEY-------DIL-------ADPDVAKTAAVSTRYSDSSLNGIILDIHFLSLSDYLVCTFSSQVCRVAYEIMQTL 502          
BLAST of mRNA_Ecto-sp13_S_contig1605.4425.1 vs. uniprot
Match: A0A1B6GD59_9HEMI (Uncharacterized protein (Fragment) n=1 Tax=Cuerna arida TaxID=1464854 RepID=A0A1B6GD59_9HEMI)

HSP 1 Score: 70.9 bits (172), Expect = 1.870e-9
Identity = 50/156 (32.05%), Postives = 82/156 (52.56%), Query Frame = 1
Query:  394 DFVTRASPSDVFQESPFLGLHIRRGDKVSQGEASMYLCKEYLEAAVEFFEGDDSQLSVGDIKGIWVASDEPKVIAKVKKIAPDYLPNVSEEDIFWASGGVEGGPEIERTATRTDKETYADFVYTFADLQQLTAADLFVGTFSSNMGRLLVLLRESI 861
            D +  A+    FQ  P +G+HIRR DKV   EA+ +  +EY++A  E+++      SV D+K I++ASD+PKV A++KK  PDY               V G P + ++A    + + + F     D+  L+  D  V TFSS + R+   + +++
Sbjct:   77 DLLHTAAERFSFQR-PIVGIHIRRTDKVGT-EAAFHSVEEYMDAVEEYYKQLSLSQSV-DVKRIYLASDDPKVFAEIKKKYPDYE--------------VLGDPSVAKSAAVATRYSDSSFNGIVMDIHFLSLCDYLVCTFSSQVCRVAYEIMQNL 215          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1605.4425.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G435_ECTSI1.410e-20693.75Alpha-(1,6)-fucosyltransferase, family GT23 n=1 Ta... [more]
A0A6H5JTL0_9PHAE8.940e-20393.10GT23 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5LR29_9PHAE5.310e-4750.81GT23 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A... [more]
D8LU00_ECTSI2.090e-2336.59Similar to putative alpha-6-fucosyltransferase n=1... [more]
A0A6J1SG56_FRAOC2.060e-1225.35alpha-(1,6)-fucosyltransferase n=1 Tax=Frankliniel... [more]
A0A482VZE0_9CUCU1.340e-1028.23Alpha-(1,6)-fucosyltransferase n=1 Tax=Asbolus ver... [more]
A0A1B6KQG1_9HEMI5.350e-1026.85Alpha-(1,6)-fucosyltransferase n=3 Tax=Cicadellina... [more]
A0A0A1TTM2_LEPSM9.170e-1025.90Alpha1,6 fucosyltransferase n=2 Tax=Lepeophtheirus... [more]
A0A6L2PGD2_COPFO9.530e-1026.27Alpha-(1,6)-fucosyltransferase n=4 Tax=Termitoidae... [more]
A0A1B6GD59_9HEMI1.870e-932.05Uncharacterized protein (Fragment) n=1 Tax=Cuerna ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1605contigEcto-sp13_S_contig1605:10660..16092 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score600.5
Seed ortholog evalue4.5e-169
Seed eggNOG ortholog2880.D7G435
Model size2484
KEGG koko:K00717
KEGG ReactionR05988,R09319
KEGG Pathwayko00510,ko00513,ko00533,ko01100,ko05202,map00510,map00513,map00533,map01100,map05202
KEGG ModuleM00075
Hectar predicted targeting categoryother localisation
Exons7
EggNOG free text desc.glycoprotein 6-alpha-L-fucosyltransferase activity
EggNOG OGsKOG3705@1,KOG3705@2759
EC2.4.1.68
Cds size951
COG Functional cat.M
CAZyGT23
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01003
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1605.4425.1prot_Ecto-sp13_S_contig1605.4425.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1605 12236..16083 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462847.5695472-UTR-Ecto-sp13_S_contig1605:10659..109431681462847.5695472-UTR-Ecto-sp13_S_contig1605:10659..10943Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1605 10660..10943 -
1681462847.5821798-UTR-Ecto-sp13_S_contig1605:10995..122351681462847.5821798-UTR-Ecto-sp13_S_contig1605:10995..12235Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1605 10996..12235 -
1681462847.6527724-UTR-Ecto-sp13_S_contig1605:16083..160921681462847.6527724-UTR-Ecto-sp13_S_contig1605:16083..16092Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1605 16084..16092 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462847.5924206-CDS-Ecto-sp13_S_contig1605:12235..123991681462847.5924206-CDS-Ecto-sp13_S_contig1605:12235..12399Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1605 12236..12399 -
1681462847.6021807-CDS-Ecto-sp13_S_contig1605:12752..128071681462847.6021807-CDS-Ecto-sp13_S_contig1605:12752..12807Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1605 12753..12807 -
1681462847.6118886-CDS-Ecto-sp13_S_contig1605:13405..136361681462847.6118886-CDS-Ecto-sp13_S_contig1605:13405..13636Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1605 13406..13636 -
1681462847.6220295-CDS-Ecto-sp13_S_contig1605:14001..141721681462847.6220295-CDS-Ecto-sp13_S_contig1605:14001..14172Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1605 14002..14172 -
1681462847.6331131-CDS-Ecto-sp13_S_contig1605:14737..148871681462847.6331131-CDS-Ecto-sp13_S_contig1605:14737..14887Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1605 14738..14887 -
1681462847.6439831-CDS-Ecto-sp13_S_contig1605:15903..160831681462847.6439831-CDS-Ecto-sp13_S_contig1605:15903..16083Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1605 15904..16083 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1605.4425.1

>prot_Ecto-sp13_S_contig1605.4425.1 ID=prot_Ecto-sp13_S_contig1605.4425.1|Name=mRNA_Ecto-sp13_S_contig1605.4425.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=317bp
MLNAWVYALSVEKWSDMTVVVDENQMKQVDCGEESGGGAQAGWDCIFKPM
SHLCTFPSAESWKEYMVSKDLPEADLVEAARLDQDAVRFHPEEIVASLEG
SGVDHIAALAAMAKYLWSNVTPWLQADVDFVTRASPSDVFQESPFLGLHI
RRGDKVSQGEASMYLCKEYLEAAVEFFEGDDSQLSVGDIKGIWVASDEPK
VIAKVKKIAPDYLPNVSEEDIFWASGGVEGGPEIERTATRTDKETYADFV
YTFADLQQLTAADLFVGTFSSNMGRLLVLLRESIGLKDRASAVSIDGPWR
AGRRRRRAMRGARGPE*
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mRNA from alignment at Ecto-sp13_S_contig1605:10660..16092-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1605.4425.1 ID=mRNA_Ecto-sp13_S_contig1605.4425.1|Name=mRNA_Ecto-sp13_S_contig1605.4425.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5433bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1605:10660..16092- (Ectocarpus species13 EcNAP12_S_4_19m)
CTCTCAGACATGCTGAACGCGTGGGTGTACGCCCTGTCAGTGGAGAAGTG GAGCGACATGACCGTGGTCGTGGACGAAAACCAGATGAAGCAGGTGGACT GCGGGGAGGAGAGCGGGGGAGGGGCTCAGGCGGGCTGGGACTGCATTTTT AAGCCTATGTCGCATCTTTGCACCTTCCCTTCGGCGGAGGTGAGCGGGGG CGACAACAGGCGCCGGGGTCCGGGGATAAGAACCGTCGAAATCCGGCAGA GGCTCAACTTCTCACTGTTTCATCGCCATAGTTTGATGGAGGATCCACTG CTGAGGTGTGATTCTTCGACCTATATTCTTCCCTATCGGGAAGCATTTTG AGCCTCTGCTGTTTCTTGAACGAAGCGTTTCTTAAACTGCGGGCCTGGCT TGAAGAGATGGGGATTCGGTCGAGCGAAAGCCCTTCAGCGGCCGAGCCAT CTTCTCGTGTGGGACCGAGCTCTGGATTGTTCTACAGTAGTGGGCCTTTA ACAACAACGCCGGTTGAATAGCGCCGGTGGCCCTACGTAGAGCCGGTGAA ATTGCTGGGCACAGACTGAATCGCCAAGTCATGCTGTACTCTCCATAGCG CCGGTCGATTCTCCGGGAACATGCCGGCGTTCTCGAGGGCCCGCTGGTGT GGCACAACTGCAGGCATGTCCTCCCGCAAGGAAAGCGAGGGCGGCGAAAT GATGTTGGTGGATCCTGCGAGCAATGATCGCATTTGTGGCCTGGACGGGA ACATTCGTAGAGATCTCAGTCGTTCTTTGGTTTCGCCACCGCTACGTTAC TACGTGGCATTTTGACGCACCCCGAAAGTGGCTGATTTGGTCACCCACAT GCAGGAAAAATATGCTCCAACAGGCCGTGTCAGCAGTTTGCCCACCCCCC GAGTGATATCCTGTCCTCGTTCGTTTCCGCATTTATGGAGGAGCGCCATT GCCACGCTTTTACGTGCTGTACACTTGCGGGTGCACCTTTTCCCTGTGAG CAGTTTTGTCAAGTAATCAAGCCTGGCGGACTCGTCCAATCACGTTAGCA GGAGAAGCACCTTATTGCAGGGCCTCGCTAGCCCTGATCCAAGAATTACC AGGTCCCCATTGGGAGGAACCAACCCCCTTGCATTCGAACGTTTCGGAGG TATTCATGAATCTGCCAACCATCGCTCAATGACTCCTTTTTTGCTACTTT TCAAGTCCTGGAAGGAGTACATGGTGTCGAAAGACCTACCCGAAGCGGAC CTGGTTGAGGCGGCGAGGCTCGACCAGGACGCTGTACGGTTCCACCCGGA AGAGATAGTGGCGTCATTGGAAGGGTCGGGGGTCGACCACATCGCTGCCT TGGCGGTGCGTCTTTGGACGTTGTTGTTGTTTGTTGCATTGTTATTTCAT GAATACTCATAACCAGCTGCAATGTACCCAATAACAGTTATCTCGGCCCC ACTGGCAAGCTGAGAGAAAAAGTGTCAGGACGCGCGATAGGCTTGAGAGT TTGTTGCGGATTGAACGCGGGCTTCGGGCGAGCAGCAGCAGTGCCACCGT GGGCGAGTTTGGGTTTCGTGTCCAAGCACGGATAGCATGTAGTACAGTTT CAGTGTGACCTTGTTCGATCGAGGTTATCCCGGGTCAGAGGTCTCCCACC GAGCGAAACATTTCAAAAGACGATGCAGATGATATTGTTTCCTGCGAGCG CGAAATTACTCAGCGACTACCATTTTTTTCCTATTCGAATAGACTTTGAG ATACTCATATGACAACAAGACAGCACGCACCAGATACCTCTCGGTTTTGT GTTTACAACAGTTGTAGACGCGCCAAAGATCCCGCCCACTCCCCACTTGC ACGGCATCCTGCCCCTCCACCGAAAGCTGACACTCGCTTGCGAAAAAAAA ATACGCGATGACGGACGCAGGCCATGGCCAAGTACTTGTGGAGCAACGTG ACCCCGTGGCTCCAGGCCGACGTCGACTTCGTCACGCGCGCCTCGCCCTC GGACGTGTTCCAGGAATCCCCGTTCCTGGGCCTGCACATACGGCGGGGTG ACAAGGTCTCGCAAGGAGAGGCGTCCATGTACCTGTGTAAGGTATGCAAC CTGCATCACCCCCCCTCCCCCGCCCCCCTTTGCTTTGCCGCGCCGTGAGC TGGGCACGAGGGTTCTCTCAGGGAGGTTTAGCAACTATGTAGTCGTGCTG TTCAATCACCGTCAATCTTTTTTGTGTTGCTGGCGATGAGCGTGCGCCAT TCGTGTATGTTGTCGAACCCGCAAGCCCTCCGCCGTGCGTCTGCGAATTA GGCCTCTTTCCCCTCTTGCGATGTGCCGTGTGCACCGCCAGCACTTGTTT GTGGAGAAACACGCGGGAAGGAACACCACCTCCCCCGAAATTTTCTATCC TTTCACTTGGCGTAACAATATTCCGTTGTGTGCGCTCCGTCACCTCCCGC GCCAAGGAATACTTGGAAGCGGCGGTGGAGTTCTTCGAGGGGGACGACAG CCAGCTTAGCGTGGGAGACATCAAGGGCATCTGGGTCGCGTCCGACGAAC CCAAGGTGATCGCCAAGGTCAAGAAGATAGCGCCGGACTACCTGCCCAAC GTGAGCGAAGAGGATATCTTCTGGGCCTCCGGCGGGGTCGAAGGAGGGCC CGAGATCGAGCGGACGGCTACGCGGACGGACAAAGAGGTAAAGCGACACA CAGGGGGCCAGAAGACAAAATCTCTCGTGTTTGTTCTGCCCACAACACCG AAAAAGAAGCCTAGTGGTACGACATATAATTGACACCTTCGGAGTGGGCT TACGAGAGCACAGCAGTGTTATCGAGGGGTAATGCAAGATGAAAATGAGC AGGCAGCAGGGTCAACTCACAGGTGAGGGTCAGGTGCTGTGTGACGTTTT CTCATGCTCAACAGCTCACACAGCAGCTTACGTGTTTGTTCACTCGAAGC GAAAAGCCCAGCGAGAACCTCAGCGAATCAAATCAAAAACAAAATTTCAA AATATTTTACACGTCAGTATTTACTCCCCTCTGAGTCACGACCGTGCGGG GTTGGGTCGCATACAGTAGCGGGGTGGTAGGCAAGAGGTCCTTCGGTGCG GGGGGCTGAGGCCGACGATACAAGGAAACCTAGGTTCGCGCTTAATTTTT TCGCTGCCCGTTGAAGTTTGAAGTAAAATCGGCCGTGTTGCGTTCGCTTG GCGCTCGGCCCGTGTGCTCGTGCATTTTTCTGTCGGTGTTTCCTCCACTC CCCCCGTTCCCTTCTCGCGCCCCATCACGCCCCAGACTTATGCGGACTTC GTGTACACGTTCGCGGACCTCCAGCAGCTCACTGCCGCAGGTGAGCTCCT TGCCTTTTTTTCATGTTTTTTTTGTAGCCTTGGGCCTGCTGAGGTTTATT TACGGAGCTGCTCTGAGACCCCGCGGCTAGTGCGAGGTGTATCGTTTCGG GCCTTCGTTTTTGCTAGGGTTTTTGTCGTACCGTTCCGTTTGTGCTGGAG CACATGGTACGGTAGGGTTGGGTCCGGGTTCTTGCATGTTGTGGCAACTC TTACGGCGTGCTACACAACCTTGTCTTGACAGCGTCTCGTGTCGATCGTG CGACCATGTTTTTCTCGGAAGCCCAGTCGGTACCATAGAAGCGTGTTCCC CCCTTACTCGTACCCTCGATGACACCGTTTGCGCTTGTATCAGACCTCTT TGTCGGCACGTTCAGCTCAAACATGGGCCGGCTGCTGGTGCTGTTGAGGG AGTCAATCGGTCTCAAAGACAGGGCTTCGGCGGTCAGCATCGACGGCCCG TGGCGTGCAGGACGGCGCCGGAGGCGTGCTATGAGAGGGGCTAGAGGCCC AGAGTAGATCGAGTAAAGGGGGCACGTTGTCGTTTGGGTGGGCACCGCTA CTTTTCCCCTCTTTCCAGTCGAGCGTGCCCCCCTGCCCTACCGCCTACCT CTCTGTTTTGATCTGATTTTTTTCTCCAGAGCAACCATGCATTCGATATG CTTGTCAGTACGGACAAGACGAAGCTGTTGTTGCTGCCTTAGCCGCTTTC TGCGGAATGAGAAAACGTAGGGATGGATGCTCCCGTTTTGTTTGGTTTTG TGCACCTTTGATTCAGGCATGCTGAACGATGGCAGTTAGCGCACTTGACG TTGTTCTTCAAGGCTATCGGCGCGTCACAGGACGACCGGTTGCCCGTGAG TGGGGCGCGACGGCACCTTTACGAAGCTACGGCCGCTACCCCCCCCACTG ATAGCAGCTACAGTAACTCTCCGTCTGAACTATGTTTTTTCTGCGGTTTC GTCGATTTGTGTTTTTTTGGGCGAGGTGGCGGCGGGATACTTTGATTCGC GACCAGAGCGGGCTCTTGAAGCAGTGGGAAGTAGATGCGGACCCATCAGT GCAGAAAGCGGTCGTAGGAAAAACCTGGACCAATAAGTGTAACGTTAACT TGGAAAAAATTTCCCCAGTCGGGTGCGACGGAAGCGAGGCAACAACGGTG ACCGTTAGCCGACTTTCGTCAAGGGGGTGATAAACGCTTTAAGCCAGTGT TAAGGCCTCTTCCTTGGAAGTTTTCTTTTTGTTCATTCATGGCTGTGTTG AGATATTTTTTTGCAGCGGGTAAATGAGGGAGTGGCGCTGAGTCCCACGT TTTTCAGCAATATTTTGTTCTGTCCAAAGTGTTGCTTTCTCAGTGATGAT CAGTTCAGAATGTTTTGTGTATATGTGTGTGTGGTGGGTGGCTCTTCACT ACATTGCCGTGCAGCACGGCGCTTTGCCGCCGCCGTCAATTCACCCTTTT CTAGTGGCAAACATTGTGCGTTTGATGGAAAGTTCGTTAGTGATGATTGT GTGAGTTTGTGCTTCCGTGCACACAGATGCTATTTGCAACCAAGGGTAAC GTATCGTACAGCGTGCACGCCCGTCGTGAGGTGCCCAAGATAGTGTGCAA AGGGTGTAGCATGAGCTTATCAGTTACACAACGGATCCCTCTCTACTGAA GGATACAGCTTTCGAAAGGGAAATGTTTTGTGTATACCCGTTTTGCCGAG ATGTTTCATGGACTTGCTCACGTTGGATGTGTCCAAGAATGCATATAGCA CGGCTTGTGCACTTTTTTTTGTTGCTGTGAGTTTTTTGTTCTGGTCCGTC TCATGTAAGGTCAGTACCACATCTCCGTGTCGAAGCGGAGGCTCTTGTTT CGTGAACAACACCAAAGTGAATTGGTGTTGTTCGTGGTACGTCGTATTGG GCGTAGTGGCGTTTTTTCTGCGATTGATTCTATGTTGGAGTACGTGAAAT AAAGCTTGCTCTTGTTGCGTGTGGTGACAGCGGGTGCGTGTGATGACAGC GGGTGCGTGTTGTGACAGCCACAGCCCCGTGCAGCACTTGCCAAGTTGTG ATGGCGTGGCCTTTTTCTCTGATGCATTTGTTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1605:10660..16092-

>mRNA_Ecto-sp13_S_contig1605.4425.1 ID=mRNA_Ecto-sp13_S_contig1605.4425.1|Name=mRNA_Ecto-sp13_S_contig1605.4425.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=951bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1605:10660..16092- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGAACGCGTGGGTGTACGCCCTGTCAGTGGAGAAGTGGAGCGACAT
GACCGTGGTCGTGGACGAAAACCAGATGAAGCAGGTGGACTGCGGGGAGG
AGAGCGGGGGAGGGGCTCAGGCGGGCTGGGACTGCATTTTTAAGCCTATG
TCGCATCTTTGCACCTTCCCTTCGGCGGAGTCCTGGAAGGAGTACATGGT
GTCGAAAGACCTACCCGAAGCGGACCTGGTTGAGGCGGCGAGGCTCGACC
AGGACGCTGTACGGTTCCACCCGGAAGAGATAGTGGCGTCATTGGAAGGG
TCGGGGGTCGACCACATCGCTGCCTTGGCGGCCATGGCCAAGTACTTGTG
GAGCAACGTGACCCCGTGGCTCCAGGCCGACGTCGACTTCGTCACGCGCG
CCTCGCCCTCGGACGTGTTCCAGGAATCCCCGTTCCTGGGCCTGCACATA
CGGCGGGGTGACAAGGTCTCGCAAGGAGAGGCGTCCATGTACCTGTGTAA
GGAATACTTGGAAGCGGCGGTGGAGTTCTTCGAGGGGGACGACAGCCAGC
TTAGCGTGGGAGACATCAAGGGCATCTGGGTCGCGTCCGACGAACCCAAG
GTGATCGCCAAGGTCAAGAAGATAGCGCCGGACTACCTGCCCAACGTGAG
CGAAGAGGATATCTTCTGGGCCTCCGGCGGGGTCGAAGGAGGGCCCGAGA
TCGAGCGGACGGCTACGCGGACGGACAAAGAGACTTATGCGGACTTCGTG
TACACGTTCGCGGACCTCCAGCAGCTCACTGCCGCAGACCTCTTTGTCGG
CACGTTCAGCTCAAACATGGGCCGGCTGCTGGTGCTGTTGAGGGAGTCAA
TCGGTCTCAAAGACAGGGCTTCGGCGGTCAGCATCGACGGCCCGTGGCGT
GCAGGACGGCGCCGGAGGCGTGCTATGAGAGGGGCTAGAGGCCCAGAGTA
G
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