mRNA_Ecto-sp13_S_contig16045.4423.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig16045.4423.1 vs. uniprot
Match: D8LSR0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSR0_ECTSI) HSP 1 Score: 162 bits (410), Expect = 5.560e-44 Identity = 78/80 (97.50%), Postives = 79/80 (98.75%), Query Frame = 2
Query: 2 QMVVGDETAHAARDSAPISILRPFDRGYITNWEPEFEVWRRMLGRNFLNADPRDSRLLATEAPFGPLVLQEAANEVVFEE 241
QMVVGDETAHAARDSAPISILRPFDRGYITNWEPEFEVWRRMLGRNFLNADPRDSRLLATEAPFGPLVLQEAANEV+ EE
Sbjct: 40 QMVVGDETAHAARDSAPISILRPFDRGYITNWEPEFEVWRRMLGRNFLNADPRDSRLLATEAPFGPLVLQEAANEVLEEE 119
BLAST of mRNA_Ecto-sp13_S_contig16045.4423.1 vs. uniprot
Match: A0A836CBT8_9STRA (Actin family n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBT8_9STRA) HSP 1 Score: 124 bits (310), Expect = 2.430e-30 Identity = 59/101 (58.42%), Postives = 70/101 (69.31%), Query Frame = 2
Query: 5 MVVGDETAHAARDSAPISILRPFDRGYITNWEPEFEVWRRMLGRNFLNA-DPRDSRLLATEAPFGPLVLQEAANEVVFEEFGFAACYRCPSAALSCYHEQV 304
++ GDET A RD + + RP DRGY+ NWE E EVW+RM + LN +P+D LL TE PF P++L E ANEVVFEE GF ACYRCP AALS Y EQV
Sbjct: 40 VLAGDETVDAVRDKSQLVYQRPHDRGYLINWENELEVWKRMFDASHLNVQNPQDHALLFTEPPFAPIMLAETANEVVFEELGFTACYRCPPAALSVYLEQV 140
BLAST of mRNA_Ecto-sp13_S_contig16045.4423.1 vs. uniprot
Match: W7TWI5_9STRA (Actin-related protein 6 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TWI5_9STRA) HSP 1 Score: 99.4 bits (246), Expect = 4.050e-21 Identity = 44/107 (41.12%), Postives = 69/107 (64.49%), Query Frame = 2
Query: 2 QMVVGDETAHAARDSAPISILRPFDRGYITNWEPEFEVWRRMLGRNFLNADPRDSRLLATEAPFGPLVLQEAANEVVFEEFGFAACYRCPSAALSCYHEQVLEEERE 322
Q ++G++ + ++A + RPFDRGY+T+WE E ++W R G N DP + L+ TEAPF P L + +VVFEEFGFAAC + P+A+ S Y ++E++++
Sbjct: 73 QWLIGEDM-DSVNNTANLQYTRPFDRGYLTDWEAEHQIWGRAFGANKAKVDPAQTHLVLTEAPFTPSPLATFSTQVVFEEFGFAACAKMPAASFSGYRYSLMEKQQQ 178
BLAST of mRNA_Ecto-sp13_S_contig16045.4423.1 vs. uniprot
Match: A0A7C8M2E1_9PLEO (Actin family n=1 Tax=Massariosphaeria phaeospora TaxID=100035 RepID=A0A7C8M2E1_9PLEO) HSP 1 Score: 80.1 bits (196), Expect = 2.720e-14 Identity = 38/88 (43.18%), Postives = 52/88 (59.09%), Query Frame = 2
Query: 38 RDSAPISILRPFDRGYITNWEPEFEVWRRML--GRNFLNADPRDSRLLATEAPFGPLVLQEAANEVVFEEFGFAACYRCPSAALSCYH 295
+D ++ RP ++G+I NWE E +W R L DPR++ LL TE P P LQ+ +E+VFE+F FAA YRC A L+ YH
Sbjct: 70 KDFGELAFRRPVEKGFIVNWEAEKTIWEHEFVEARAGLRCDPRETNLLLTEKPNCPRELQKNCDEIVFEQFEFAAYYRCVGATLNAYH 157
BLAST of mRNA_Ecto-sp13_S_contig16045.4423.1 vs. uniprot
Match: A0A8H7VJD6_9FUNG (Uncharacterized protein n=1 Tax=Mucor circinatus TaxID=2054153 RepID=A0A8H7VJD6_9FUNG) HSP 1 Score: 79.7 bits (195), Expect = 3.430e-14 Identity = 39/99 (39.39%), Postives = 60/99 (60.61%), Query Frame = 2
Query: 11 VGDETAHAARDSAPISILRPFDRGYITNWEPEFEVWRRMLGRNFLNADPRDSRLLATEAPFGPLVLQEAANEVVFEEFGFAACYRCPSAALSCYHEQVL 307
+GD+ D + + PF+RG++TNW+ E VW R+ N L DP+DSRLL TE F +QEA ++++FEE+ FA+CYR + L +++ L
Sbjct: 43 IGDQIDQCT-DFSSLYYRLPFERGFLTNWDVERPVWNRLFS-NVLQIDPKDSRLLITEPCFNLKNIQEAYDQIIFEEYEFASCYRTIAPELCTFNDLAL 139
BLAST of mRNA_Ecto-sp13_S_contig16045.4423.1 vs. uniprot
Match: L8GW12_ACACA (Actinrelated protein Arp6, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GW12_ACACA) HSP 1 Score: 79.7 bits (195), Expect = 3.540e-14 Identity = 36/92 (39.13%), Postives = 61/92 (66.30%), Query Frame = 2
Query: 38 RDSAPISILRPFDRGYITNWEPEFEVWRRMLGRNFLNADPRDSRLLATEAPFGPLVLQEAANEVVFEEFGFAACYRC-PSAALSCYHEQVLE 310
RD + + + RPF++GY+ ++E + E+W R G+++L P+D L+ T+ F PL LQEA E+VFEE+GF + + C P+ A+ Y+++ E
Sbjct: 49 RDISGLYLRRPFEKGYLVDFELQKEIWDRAFGKHYLKIQPKDHDLVLTQPLFTPLALQEATLELVFEEYGFKSLFCCSPATAVMHYYQKQPE 140
BLAST of mRNA_Ecto-sp13_S_contig16045.4423.1 vs. uniprot
Match: A0A6A6SC62_9PLEO (Actin/actin-like protein n=1 Tax=Massarina eburnea CBS 473.64 TaxID=1395130 RepID=A0A6A6SC62_9PLEO) HSP 1 Score: 79.0 bits (193), Expect = 6.870e-14 Identity = 41/97 (42.27%), Postives = 54/97 (55.67%), Query Frame = 2
Query: 11 VGDETAHAARDSAPISILRPFDRGYITNWEPEFEVWRR--MLGRNFLNADPRDSRLLATEAPFGPLVLQEAANEVVFEEFGFAACYRCPSAALSCYH 295
V E H +D ++ RP ++G+I NWE E +W M L DP D+ LL TE P P LQ+ +E+VFE+F FAA YRC AL+ YH
Sbjct: 62 VASELEHC-KDFGELAFRRPVEKGFIVNWEAEKAIWEHEFMGAGEGLRCDPSDTNLLLTEKPNCPKELQKNCDEIVFEQFEFAAYYRCIGPALNAYH 157
BLAST of mRNA_Ecto-sp13_S_contig16045.4423.1 vs. uniprot
Match: A0A6G1KYN0_9PEZI (Actin-related protein, ARP6 class n=1 Tax=Teratosphaeria nubilosa TaxID=161662 RepID=A0A6G1KYN0_9PEZI) HSP 1 Score: 79.0 bits (193), Expect = 7.280e-14 Identity = 40/107 (37.38%), Postives = 54/107 (50.47%), Query Frame = 2
Query: 11 VGDETAHAARDSAPISILRPFDRGYITNWEPEFEVWRRMLGRNF-------------LNADPRDSRLLATEAPFGPLVLQEAANEVVFEEFGFAACYRCPSAALSCY 292
+G E + D + RP ++GYI NWE E +W + + L DP ++ LL TEAP P LQ +E+VFEEFGF A +RC + ALS Y
Sbjct: 71 IGAELSEECEDYGELKYRRPVEKGYIVNWESEKAIWEKTFLSGYGQKSADRGGVGDGLVCDPAETNLLLTEAPNAPAALQRNCDEMVFEEFGFGAYFRCLAPALSAY 177
BLAST of mRNA_Ecto-sp13_S_contig16045.4423.1 vs. uniprot
Match: A0A163EZV0_DIDRA (Uncharacterized protein n=2 Tax=Ascochyta TaxID=5453 RepID=A0A163EZV0_DIDRA) HSP 1 Score: 78.6 bits (192), Expect = 9.380e-14 Identity = 36/90 (40.00%), Postives = 54/90 (60.00%), Query Frame = 2
Query: 32 AARDSAPISILRPFDRGYITNWEPEFEVWRR--MLGRNFLNADPRDSRLLATEAPFGPLVLQEAANEVVFEEFGFAACYRCPSAALSCYH 295
+ +D ++ RP ++G+I NWE E +W M R L +P+++ L+ TE P P LQ+ +E+VFE+F FAA YRC A L+ YH
Sbjct: 68 SCKDFGELAFRRPVEKGFIVNWEAEKAIWEHEFMGAREGLRCEPKETNLVLTEKPNCPRELQKNCDEIVFEQFEFAAYYRCVGATLAAYH 157
BLAST of mRNA_Ecto-sp13_S_contig16045.4423.1 vs. uniprot
Match: A0A068RRA9_9FUNG (Arp6 actin-related protein 6 homolog n=2 Tax=Lichtheimia TaxID=688353 RepID=A0A068RRA9_9FUNG) HSP 1 Score: 77.8 bits (190), Expect = 1.590e-13 Identity = 37/96 (38.54%), Postives = 58/96 (60.42%), Query Frame = 2
Query: 11 VGDETAHAARDSAPISILRPFDRGYITNWEPEFEVWRRMLGRNFLNADPRDSRLLATEAPFGPLVLQEAANEVVFEEFGFAACYRCPSAALSCYHE 298
+GD+ D + + PF+RGY+TNW E +W R+ G + LN DP+DS +L TE F +QE ++V+FE++ FA+CYR + L Y++
Sbjct: 42 IGDQIEQCT-DFSSLYYRLPFERGYLTNWGVERPIWNRLFG-SVLNIDPKDSGILITEPCFNLSNIQEVYDQVIFEDYEFASCYRTTAPQLCIYND 135 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16045.4423.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig16045.4423.1 >prot_Ecto-sp13_S_contig16045.4423.1 ID=prot_Ecto-sp13_S_contig16045.4423.1|Name=mRNA_Ecto-sp13_S_contig16045.4423.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=109bp MVVGDETAHAARDSAPISILRPFDRGYITNWEPEFEVWRRMLGRNFLNADback to top mRNA from alignment at Ecto-sp13_S_contig16045:1620..3651- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig16045.4423.1 ID=mRNA_Ecto-sp13_S_contig16045.4423.1|Name=mRNA_Ecto-sp13_S_contig16045.4423.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2032bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16045:1620..3651- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16045:1620..3651- >mRNA_Ecto-sp13_S_contig16045.4423.1 ID=mRNA_Ecto-sp13_S_contig16045.4423.1|Name=mRNA_Ecto-sp13_S_contig16045.4423.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=327bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16045:1620..3651- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |