mRNA_Ecto-sp13_S_contig1604.4421.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1604.4421.1
Unique NamemRNA_Ecto-sp13_S_contig1604.4421.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1604.4421.1 vs. uniprot
Match: D7G968_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G968_ECTSI)

HSP 1 Score: 166 bits (420), Expect = 6.010e-51
Identity = 85/109 (77.98%), Postives = 95/109 (87.16%), Query Frame = 1 
Query:   61 MISKSKTREARKRRPALRR-SHLLVAILMSAITVSVVESNRLLEFPSGARCMWNDLPHPAQFAIIFLMLALLFGVHRIFGKLDNAAYARLSRAGKDSTGSLRYCRALPY 384
            MISKSKTR+ARKRRP LRR SHLLVA  MSA+ V +VESNRL+EFPSG  C WNDLPHPAQFA+IFLMLALLFGVH+IFGKLD+AAYARLSRA K+STGS+RY    P+
Sbjct:    1 MISKSKTRKARKRRPGLRRRSHLLVATAMSAMIVGIVESNRLVEFPSGVMCTWNDLPHPAQFAVIFLMLALLFGVHQIFGKLDSAAYARLSRAVKNSTGSIRYSVGSPH 109
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BLAST of mRNA_Ecto-sp13_S_contig1604.4421.1 vs. uniprot
Match: A0A6H5JLZ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLZ1_9PHAE)

HSP 1 Score: 159 bits (401), Expect = 3.670e-48
Identity = 81/92 (88.04%), Postives = 85/92 (92.39%), Query Frame = 1 
Query:   61 MISKSKTREARKRRPALRRSHLLVAILMSAITVSVVESNRLLEFPSGARCMWNDLPHPAQFAIIFLMLALLFGVHRIFGKLDNAAYARLSRA 336
            MI KSKTREARKR PALRRSHLLVA +MSA TV +VESNRL+EFPS  RCMWNDLPHPAQFAIIFLMLALLFGVHRIFGKLD+AAYARLSRA
Sbjct:    1 MIRKSKTREARKRPPALRRSHLLVATVMSATTVKIVESNRLVEFPSVFRCMWNDLPHPAQFAIIFLMLALLFGVHRIFGKLDDAAYARLSRA 92
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BLAST of mRNA_Ecto-sp13_S_contig1604.4421.1 vs. uniprot
Match: A0A6H5JK72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK72_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 1.290e-37
Identity = 68/79 (86.08%), Postives = 73/79 (92.41%), Query Frame = 1 
Query:   22 PTPTVFRELGASAMISKSKTREARKRRPALRRSHLLVAILMSAITVSVVESNRLLEFPSGARCMWNDLPHPAQFAIIFL 258
            PTPT FRE+GAS MISKSKTREARKRRPALRRSHLLVAI MSA+TV +VESNRL+EFPSGARCMW +LPHP QFAIIFL
Sbjct:   25 PTPT-FREVGASPMISKSKTREARKRRPALRRSHLLVAIAMSAMTVRIVESNRLVEFPSGARCMWKNLPHPVQFAIIFL 102
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BLAST of mRNA_Ecto-sp13_S_contig1604.4421.1 vs. uniprot
Match: D7G4F6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4F6_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 4.160e-22
Identity = 42/66 (63.64%), Postives = 52/66 (78.79%), Query Frame = 1 
Query:  139 LMSAITVSVVESNRLLEFPSGARCMWNDLPHPAQFAIIFLMLALLFGVHRIFGKLDNAAYARLSRA 336
            L+SAI V +VE  RL+E PSG RCMWNDLPH  QFAI+FLML +L+GV+R+F K D A Y+RL+ A
Sbjct:   17 LVSAIQVDLVEGKRLIELPSGVRCMWNDLPHGLQFAILFLMLGILYGVNRLFDKADEAMYSRLTCA 82
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BLAST of mRNA_Ecto-sp13_S_contig1604.4421.1 vs. uniprot
Match: D7FU60_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU60_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 2.250e-21
Identity = 46/72 (63.89%), Postives = 57/72 (79.17%), Query Frame = 1 
Query:  121 HLLVAILMSAITVSVVESNRLLEFPSGARCMWNDLPHPAQFAIIFLMLALLFGVHRIFGKLDNAAYARLSRA 336
            H LV ++ SA+ V V ES +L+EF SG +CMW DLPHP QFA++ +M AL FG++RIFGKLD AAYARLSRA
Sbjct:  138 HFLVLVI-SAMVVGVAES-KLVEFQSGFKCMWYDLPHPVQFAVLLMMPALFFGINRIFGKLDKAAYARLSRA 207
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BLAST of mRNA_Ecto-sp13_S_contig1604.4421.1 vs. uniprot
Match: A0A6H5KYN8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYN8_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 1.790e-19
Identity = 43/72 (59.72%), Postives = 55/72 (76.39%), Query Frame = 1 
Query:  121 HLLVAILMSAITVSVVESNRLLEFPSGARCMWNDLPHPAQFAIIFLMLALLFGVHRIFGKLDNAAYARLSRA 336
            H LV ++ SA+ V V ES +L+EF SG +C+W DLPHP QFA++ +M AL FG++ IFGKLD  AYARLSRA
Sbjct:   47 HFLV-LVTSAMVVGVAES-KLVEFRSGFKCIWYDLPHPVQFAVLLMMPALFFGINWIFGKLDKVAYARLSRA 116
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BLAST of mRNA_Ecto-sp13_S_contig1604.4421.1 vs. uniprot
Match: D7G956_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G956_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 1.810e-19
Identity = 39/65 (60.00%), Postives = 48/65 (73.85%), Query Frame = 1 
Query:  142 MSAITVSVVESNRLLEFPSGARCMWNDLPHPAQFAIIFLMLALLFGVHRIFGKLDNAAYARLSRA 336
            MS   V V ESN L++ PSG +CMW +L HP QFA++ +M AL  GV+R+FG LD AAYARLSRA
Sbjct:    1 MSVTVVGVAESNMLVDLPSGFKCMWYNLSHPVQFAVLLVMPALFLGVNRMFGMLDKAAYARLSRA 65
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BLAST of mRNA_Ecto-sp13_S_contig1604.4421.1 vs. uniprot
Match: D7FNC6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNC6_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 3.580e-19
Identity = 49/52 (94.23%), Postives = 50/52 (96.15%), Query Frame = 1 
Query:   22 PTPTVFRELGASAMISKSKTREARKRRPALRRSHLLVAILMSAITVSVVESN 177
            PTPT F ELGASAMISKSKTREARKRRPALRRSHLLVAILMSA+TVSVVESN
Sbjct:   10 PTPT-FLELGASAMISKSKTREARKRRPALRRSHLLVAILMSAMTVSVVESN 60
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BLAST of mRNA_Ecto-sp13_S_contig1604.4421.1 vs. uniprot
Match: A0A6H5JJ82_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ82_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 6.900e-19
Identity = 40/66 (60.61%), Postives = 48/66 (72.73%), Query Frame = 1 
Query:  139 LMSAITVSVVESNRLLEFPSGARCMWNDLPHPAQFAIIFLMLALLFGVHRIFGKLDNAAYARLSRA 336
            L+S   V VVE   L+EFPSG RCMWNDLPH  QFAI+ LML +L+GV+R+F K D A Y RL+ A
Sbjct:   63 LISVAHVDVVEGKWLIEFPSGFRCMWNDLPHGLQFAILLLMLGILYGVNRLFDKADEAIYTRLTCA 128
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BLAST of mRNA_Ecto-sp13_S_contig1604.4421.1 vs. uniprot
Match: A0A6H5L6K1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L6K1_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 2.480e-17
Identity = 46/100 (46.00%), Postives = 63/100 (63.00%), Query Frame = 1 
Query:   70 KSKTREARKRRPALR---RSHL--------LVAILMSAITVSVVESNRLLEFPSGARCMWNDLPHPAQFAIIFLMLALLFGVHRIFGKLDNAAYARLSRA 336
            KS+TR+  + + ALR   RS           +  L+SA+ V +VE   L+EFP   RC+WNDLPH  QFAI+FLML +L+GV+R+F K D A + RL+ A
Sbjct:   31 KSETRQLSRNKAALRPFVRSSTGRSLGGRRAILALVSAVHVDLVEGKWLIEFPPRFRCIWNDLPHGLQFAILFLMLGVLYGVNRLFDKADQAMHTRLTCA 130
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1604.4421.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
D7G968_ECTSI6.010e-5177.98Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JLZ1_9PHAE3.670e-4888.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JK72_9PHAE1.290e-3786.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G4F6_ECTSI4.160e-2263.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FU60_ECTSI2.250e-2163.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KYN8_9PHAE1.790e-1959.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G956_ECTSI1.810e-1960.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FNC6_ECTSI3.580e-1994.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JJ82_9PHAE6.900e-1960.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6K1_9PHAE2.480e-1746.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1604contigEcto-sp13_S_contig1604:5551..7442 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size386
Hectar predicted targeting categorysignal anchor
Exons5
Cds size384
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462847.2803326-CDS-Ecto-sp13_S_contig1604:5550..55981681462847.2803326-CDS-Ecto-sp13_S_contig1604:5550..5598Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1604 5551..5598 -
1681462847.2887006-CDS-Ecto-sp13_S_contig1604:5763..58411681462847.2887006-CDS-Ecto-sp13_S_contig1604:5763..5841Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1604 5764..5841 -
1681462847.2964895-CDS-Ecto-sp13_S_contig1604:6105..61851681462847.2964895-CDS-Ecto-sp13_S_contig1604:6105..6185Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1604 6106..6185 -
1681462847.304478-CDS-Ecto-sp13_S_contig1604:6520..65821681462847.304478-CDS-Ecto-sp13_S_contig1604:6520..6582Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1604 6521..6582 -
1681462847.3129718-CDS-Ecto-sp13_S_contig1604:7326..74421681462847.3129718-CDS-Ecto-sp13_S_contig1604:7326..7442Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1604 7327..7442 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1604.4421.1prot_Ecto-sp13_S_contig1604.4421.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1604 5551..7442 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1604.4421.1

>prot_Ecto-sp13_S_contig1604.4421.1 ID=prot_Ecto-sp13_S_contig1604.4421.1|Name=mRNA_Ecto-sp13_S_contig1604.4421.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=128bp
ARLVSCTPTPTVFRELGASAMISKSKTREARKRRPALRRSHLLVAILMSA
ITVSVVESNRLLEFPSGARCMWNDLPHPAQFAIIFLMLALLFGVHRIFGK
LDNAAYARLSRAGKDSTGSLRYCRALPY
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mRNA from alignment at Ecto-sp13_S_contig1604:5551..7442-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1604.4421.1 ID=mRNA_Ecto-sp13_S_contig1604.4421.1|Name=mRNA_Ecto-sp13_S_contig1604.4421.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1892bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1604:5551..7442- (Ectocarpus species13 EcNAP12_S_4_19m)
GCAAGACTTGTTTCCTGCACCCCGACTCCTACGGTGTTCCGTGAACTCGG
GGCTTCGGCGATGATCAGCAAGAGCAAGACCCGTGAGGCCCGCAAGCGAC
GTCCCGCGCTTCGAAGGTACACATGACCAAACGGGATTCGAAATACGGGA
GTATCCCACTAACGACCTGGCGACCCATCCGCGAACCGCCTTATTCCACG
TGATACCTGCGGCGTTCGGGATATTTTTGGACGCTCGGAATCGCCTTGAG
TAGTGTCGGTTGCACAACTTGGATATGTTGTCGCTTGTTGGGTGGTGGTT
CCGCACCGTTTGGTGTCGTTTTAACAGTAGGTCTACAGGCCTTGAAGCGT
TCGGGATAGAAGTTTGTTGAAGCATGGTTGACTGTGGGATGACGGTTGTT
TCTGTTCTAGAAATCAATATGTAATCAGTACGCCTTCTCAAGCGTTTTCC
TGTTGCGATGAGGCTCATGTCTTGACGAAGGAAAGTGGCCCTATTCAGGG
CTCCCATACATGCGTGTTCGACCTGGTGTGCATGTTTTGAGTATGGTCGT
ACATGCGATGACAGCCATGTGTCGCAGCACCGGAGACTCCCAAATCCTCT
GCAACTCGAGGTATTGACACTTTTGGGCGCACCCGTGGAACGCACACCCC
CACATTGGTGCGGCCGGAGACGAGCGGTTTTAGAACTGTCGAGGGCAACG
ATCCTTTGTCACACACTGTCGTTTACGTTGCTCGGTAGTTCGTTCCTGCT
TCATGCATACATTTATGCAGTGACCGCTGACTCTGCCCTGTGTTACTCGT
TTCATGTGATACTGCCCTCTACTCTCGCTTGTCTGTCACCGTTGTACGCC
GCCGCGGTAGGTCTCACCTCCTGGTGGCGATCCTGATGTCAGCAATAACC
GTGAGCGTCGTGGAAAGCAACAGTGAGCGGCGAACACTCATGTTGTCGGC
GGTGTTGCGGGCTTGGGGGGGTCTGCCTACGGCGTCGAACTTCGAAACGC
TGTGTCCGTCCTGCTCGTGACCCCGCGATATCCTACCGGAAATACTGCAT
GATACATGATATCAAGTGCAGCTACAGTTTGAAGTCCCGTGGATGCACGT
GTCGGGTGGGGTATCCGCCACAGTCGTAGTAAATGGCTCGTCAGCACAAA
TGCGCGGGGCTCCTAGGGTTTTGTCTTGTAGGCTAGCGGTGACGCGCACG
TGGGTTTTCGGTTCCTCCCCCTCACCCGCGACTTTGCGGCTGGTGCGCGC
CGAGCAGGGCTGCTTGAGTTTCCGTCTGGCGCCAGGTGCATGTGGAACGA
CCTGCCGCACCCGGCTCAGTTTGCGATCATATTTCTGGTGAGTGAGCACT
GTTGACTTTGCCCTCCACGCTGCAACGTGAGGTCGTTTGGGTAAAAATTC
CGCTGTATCAATATGTTCGATGCGTTCTTGGGTCTTGCGGGCATGCTGCT
GCCGCTGTGTGCCTCCGGTACAAAACCAAGCGGCAGGACGTATCGATGGC
CGCCAGTCGAACAAGCCCAACTTGACGTGTCGTCATGAAGAACCGAGCTC
ATTTCGATTTTGGCGGTGTGGTGCGTTATGGTGCTTCAACTCCTCCCACA
GATGCTTGCGCTCCTGTTCGGCGTCCACCGGATTTTCGGCAAGCTTGACA
ACGCCGCGTACGCTCGGCTGTCTCGTGCTGTAACTGCGTGGATGAACGAA
AGGCGGCATGCACATCAGGGTTAGTCGAAGACGCGTGATGGCATCGGGGG
CTGAACGCTAAGAACCTACCATGGGGCTTCAAGAGAGTTGGAATTCGATA
GTAGGTACCACTCTGCCTTGCTGCGGTGGTGAGGCAATTTTCAGGGTAAG
GATTCCACGGGTTCGCTTCGGTACTGTAGAGCTCTCCCGTAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1604:5551..7442-

>mRNA_Ecto-sp13_S_contig1604.4421.1 ID=mRNA_Ecto-sp13_S_contig1604.4421.1|Name=mRNA_Ecto-sp13_S_contig1604.4421.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=384bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1604:5551..7442- (Ectocarpus species13 EcNAP12_S_4_19m)
GCAAGACTTGTTTCCTGCACCCCGACTCCTACGGTGTTCCGTGAACTCGG
GGCTTCGGCGATGATCAGCAAGAGCAAGACCCGTGAGGCCCGCAAGCGAC
GTCCCGCGCTTCGAAGGTCTCACCTCCTGGTGGCGATCCTGATGTCAGCA
ATAACCGTGAGCGTCGTGGAAAGCAACAGGCTGCTTGAGTTTCCGTCTGG
CGCCAGGTGCATGTGGAACGACCTGCCGCACCCGGCTCAGTTTGCGATCA
TATTTCTGATGCTTGCGCTCCTGTTCGGCGTCCACCGGATTTTCGGCAAG
CTTGACAACGCCGCGTACGCTCGGCTGTCTCGTGCTGGTAAGGATTCCAC
GGGTTCGCTTCGGTACTGTAGAGCTCTCCCGTAC
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