mRNA_Ecto-sp13_S_contig16038.4420.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16038.4420.1
Unique NamemRNA_Ecto-sp13_S_contig16038.4420.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16038.4420.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16038contigEcto-sp13_S_contig16038:1331..1485 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size155
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size135
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462847.242112-CDS-Ecto-sp13_S_contig16038:1330..14651681462847.242112-CDS-Ecto-sp13_S_contig16038:1330..1465Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16038 1331..1465 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462847.2507744-UTR-Ecto-sp13_S_contig16038:1465..14851681462847.2507744-UTR-Ecto-sp13_S_contig16038:1465..1485Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16038 1466..1485 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16038.4420.1prot_Ecto-sp13_S_contig16038.4420.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16038 1331..1465 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16038.4420.1

>prot_Ecto-sp13_S_contig16038.4420.1 ID=prot_Ecto-sp13_S_contig16038.4420.1|Name=mRNA_Ecto-sp13_S_contig16038.4420.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=45bp
MWHAPGPAWQTTPRNSRKLGWNFGSLTARNPHAFGCANEINTTL*
back to top

mRNA from alignment at Ecto-sp13_S_contig16038:1331..1485-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16038.4420.1 ID=mRNA_Ecto-sp13_S_contig16038.4420.1|Name=mRNA_Ecto-sp13_S_contig16038.4420.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=155bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16038:1331..1485- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTTTCGGTGACACTTGAATGTGGCATGCACCAGGTCCGGCTTGGCAA
ACCACGCCGAGAAACAGTAGAAAGCTTGGCTGGAACTTCGGCTCCCTGAC
CGCGCGCAATCCGCACGCGTTTGGGTGTGCAAATGAGATTAACACAACGC
TCTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16038:1331..1485-

>mRNA_Ecto-sp13_S_contig16038.4420.1 ID=mRNA_Ecto-sp13_S_contig16038.4420.1|Name=mRNA_Ecto-sp13_S_contig16038.4420.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=135bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16038:1331..1485- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGGCATGCACCAGGTCCGGCTTGGCAAACCACGCCGAGAAACAGTAG
AAAGCTTGGCTGGAACTTCGGCTCCCTGACCGCGCGCAATCCGCACGCGT
TTGGGTGTGCAAATGAGATTAACACAACGCTCTGA
back to top