mRNA_Ecto-sp13_S_contig16037.4418.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16037.4418.1
Unique NamemRNA_Ecto-sp13_S_contig16037.4418.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16037.4418.1 vs. uniprot
Match: D8LKD7_ECTSI (ACB domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKD7_ECTSI)

HSP 1 Score: 180 bits (457), Expect = 2.490e-53
Identity = 88/89 (98.88%), Postives = 88/89 (98.88%), Query Frame = 2 
Query:    2 ELMANARQYGEADKLALYGLFKQAKWGDCPAGLVTAQRGNPVGSVKVRAWVTNRGKPTAQAMQEFIVVLGRVSPGWESRVVISGNSDTS 268
            ELMANARQYGEADKLALYGLFKQAKWGDCP GLVTAQRGNPVGSVKVRAWVTNRGKPTAQAMQEFIVVLGRVSPGWESRVVISGNSDTS
Sbjct:  116 ELMANARQYGEADKLALYGLFKQAKWGDCPDGLVTAQRGNPVGSVKVRAWVTNRGKPTAQAMQEFIVVLGRVSPGWESRVVISGNSDTS 204
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BLAST of mRNA_Ecto-sp13_S_contig16037.4418.1 vs. uniprot
Match: A0A6H5LAN0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAN0_9PHAE)

HSP 1 Score: 176 bits (445), Expect = 8.200e-48
Identity = 84/89 (94.38%), Postives = 88/89 (98.88%), Query Frame = 2 
Query:    2 ELMANARQYGEADKLALYGLFKQAKWGDCPAGLVTAQRGNPVGSVKVRAWVTNRGKPTAQAMQEFIVVLGRVSPGWESRVVISGNSDTS 268
            ELM+NARQYGEADKLALYGLFKQAKWGDCPAG+V AQRG+PVGSVKVRAWVTNRGKPTAQAMQEFIVVLGRVSPGWESRVV+SGNSDTS
Sbjct: 1759 ELMSNARQYGEADKLALYGLFKQAKWGDCPAGMVAAQRGDPVGSVKVRAWVTNRGKPTAQAMQEFIVVLGRVSPGWESRVVMSGNSDTS 1847
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16037.4418.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LKD7_ECTSI2.490e-5398.88ACB domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5LAN0_9PHAE8.200e-4894.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16037contigEcto-sp13_S_contig16037:419..1408 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size507
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionAcyl-CoA-binding protein, ACBP
Ec32 orthologEc-05_001140.1
Cds size498
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462847.1141486-UTR-Ecto-sp13_S_contig16037:418..4251681462847.1141486-UTR-Ecto-sp13_S_contig16037:418..425Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16037 419..425 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462847.1294653-CDS-Ecto-sp13_S_contig16037:425..6321681462847.1294653-CDS-Ecto-sp13_S_contig16037:425..632Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16037 426..632 +
1681462847.1495686-CDS-Ecto-sp13_S_contig16037:1117..14081681462847.1495686-CDS-Ecto-sp13_S_contig16037:1117..1408Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16037 1118..1408 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16037.4418.1prot_Ecto-sp13_S_contig16037.4418.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16037 426..1408 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16037.4418.1

>prot_Ecto-sp13_S_contig16037.4418.1 ID=prot_Ecto-sp13_S_contig16037.4418.1|Name=mRNA_Ecto-sp13_S_contig16037.4418.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=166bp
MANARQYGEADKLALYGLFKQAKWGDCPAGLVTAQRGNPVGSVKVRAWVT
NRGKPTAQAMQEFIVVLGRVSPGWESRVVISGNSDTSSNTTTTPSGPAPS
LLNTPGGGGGGLTPGGGANGGGGGRFARMGSAASSVMSSPDGLPTLVGGG
VRGDAMGGVVPAPPAR
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mRNA from alignment at Ecto-sp13_S_contig16037:419..1408+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16037.4418.1 ID=mRNA_Ecto-sp13_S_contig16037.4418.1|Name=mRNA_Ecto-sp13_S_contig16037.4418.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=990bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16037:419..1408+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGAGCTGATGGCCAACGCGAGGCAGTACGGGGAGGCCGACAAGCTAGCTC
TGTACGGGCTGTTCAAGCAGGCCAAGTGGGGCGATTGCCCCGCCGGGCTG
GTAACGGCGCAGCGGGGTAATCCTGTTGGGTCTGTCAAGGTCCGCGCCTG
GGTGACCAATCGCGGGAAGCCTACCGCGCAGGCCATGCAAGAGTTCATCG
TGGTTCTAGGGAGGGTGAGTGAGCTATGTATGCATGCGAATACTGCTGTA
CCATGTAGATAGGTTGCGTAGGATGCCGCCCCCACGCGCCCCATGGACCG
ATCTCCAAAGCTCGACTGCGGATCCATTTTCAGGACCGAGGCGTGTGGCC
CAAGAGTGTGGTGTGAAGCCATCGCCACATGTTTGAGCTGCGTACCGCCG
TAGCAGTGTGTGCCTATTTTGGCTACTTTTTCAAGGTTGCCTTGAGTTGC
ACGCGATAATTTTGTGTGCGCTGTCGATCAATCAATCGATTGCTCAATCG
ATTGTCGCGGTTGTGTTGTGCATAACGATGGATCATGATGCGGTTCAGTT
CAGGAAAAATATGCGGAAGTATCTACGGTATACTCTTTTTTTTTCCACCC
TCTATTTCTCCTCCCGCGCGGACGGACGCTGCGTTGTCCGCGGCTGCTGT
TGATCCTTTTTGTTCCCCGGCTGCTGGTACTGGTGCTGCTGTTCCCCAGG
TCTCTCCGGGATGGGAGTCCAGGGTGGTCATCTCGGGCAACAGCGACACC
AGCAGCAACACCACCACCACCCCGTCGGGCCCCGCCCCCTCGTTACTCAA
CACTCCCGGCGGTGGTGGAGGGGGCCTAACCCCGGGGGGAGGAGCGAACG
GCGGCGGCGGCGGCCGTTTCGCCCGCATGGGTAGCGCCGCTTCCTCAGTG
ATGTCATCTCCTGACGGGCTCCCCACGCTTGTCGGCGGGGGGGTCCGGGG
GGACGCCATGGGGGGGGTAGTTCCTGCCCCCCCCGCGCGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16037:419..1408+

>mRNA_Ecto-sp13_S_contig16037.4418.1 ID=mRNA_Ecto-sp13_S_contig16037.4418.1|Name=mRNA_Ecto-sp13_S_contig16037.4418.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=498bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16037:419..1408+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCAACGCGAGGCAGTACGGGGAGGCCGACAAGCTAGCTCTGTACGG
GCTGTTCAAGCAGGCCAAGTGGGGCGATTGCCCCGCCGGGCTGGTAACGG
CGCAGCGGGGTAATCCTGTTGGGTCTGTCAAGGTCCGCGCCTGGGTGACC
AATCGCGGGAAGCCTACCGCGCAGGCCATGCAAGAGTTCATCGTGGTTCT
AGGGAGGGTCTCTCCGGGATGGGAGTCCAGGGTGGTCATCTCGGGCAACA
GCGACACCAGCAGCAACACCACCACCACCCCGTCGGGCCCCGCCCCCTCG
TTACTCAACACTCCCGGCGGTGGTGGAGGGGGCCTAACCCCGGGGGGAGG
AGCGAACGGCGGCGGCGGCGGCCGTTTCGCCCGCATGGGTAGCGCCGCTT
CCTCAGTGATGTCATCTCCTGACGGGCTCCCCACGCTTGTCGGCGGGGGG
GTCCGGGGGGACGCCATGGGGGGGGTAGTTCCTGCCCCCCCCGCGCGG
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