mRNA_Ecto-sp13_S_contig16036.4417.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16036.4417.1
Unique NamemRNA_Ecto-sp13_S_contig16036.4417.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16036.4417.1 vs. uniprot
Match: D8LTN1_ECTSI (Phosphoenolpyruvate carboxylase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTN1_ECTSI)

HSP 1 Score: 467 bits (1201), Expect = 2.140e-156
Identity = 232/239 (97.07%), Postives = 238/239 (99.58%), Query Frame = 1 
Query:    1 QVRRIKPVPQDEARAGIAVIEQVLWDAVPAYLRRLDGVLTETVGKSLPIQAAPVVFASWMGGDRDGNPNVTPAVTREVSFTARREAATLYLKDVKGLNMELSATKCSQELRDVVGDSREPYRVICRQLEKDLEETIDMLQEMIDGEMEPDVEALPINSRTQLLEPLMMMYKSLVSTGQRALATGPLVDSIRRVGCFGVCLAPLDLRQESTRHTEAMDAITRYLGVGSYAQWDETTRQSW 717
            +VRRIKPVPQDEARAGIAVIEQVLWDAVPAYLRRLDGVLTETVGKSLPIQAAPVVFASWMGGDRDGNPNVTPAVTREVSFTARREAATLYLKDVK LNMELSATKCSQELRDVVGDSREPYRVICRQLEKDLEETI+ML+EMIDGE+EPDVEALP+NSRTQLLEPLMMMYKSLVSTGQRALATGPLVDSIRRVGCFG+CLAPLDLRQESTRHTEAMDAITRYLGVGSYAQWDETTRQSW
Sbjct:  249 EVRRIKPVPQDEARAGIAVIEQVLWDAVPAYLRRLDGVLTETVGKSLPIQAAPVVFASWMGGDRDGNPNVTPAVTREVSFTARREAATLYLKDVKDLNMELSATKCSQELRDVVGDSREPYRVICRQLEKDLEETIEMLEEMIDGELEPDVEALPVNSRTQLLEPLMMMYKSLVSTGQRALATGPLVDSIRRVGCFGICLAPLDLRQESTRHTEAMDAITRYLGVGSYAQWDETTRQSW 487
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BLAST of mRNA_Ecto-sp13_S_contig16036.4417.1 vs. uniprot
Match: A0A097IUC8_9PHAE (Phosphoenolpyruvate carboxylase n=2 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A097IUC8_9PHAE)

HSP 1 Score: 421 bits (1082), Expect = 1.260e-138
Identity = 208/239 (87.03%), Postives = 222/239 (92.89%), Query Frame = 1 
Query:    1 QVRRIKPVPQDEARAGIAVIEQVLWDAVPAYLRRLDGVLTETVGKSLPIQAAPVVFASWMGGDRDGNPNVTPAVTREVSFTARREAATLYLKDVKGLNMELSATKCSQELRDVVGDSREPYRVICRQLEKDLEETIDMLQEMIDGEMEPDVEALPINSRTQLLEPLMMMYKSLVSTGQRALATGPLVDSIRRVGCFGVCLAPLDLRQESTRHTEAMDAITRYLGVGSYAQWDETTRQSW 717
            +VRR KPVPQDEARAG+AVIE+VLWDAVPAYLRRLDGVL ETVGK+LPI AAPVVFASWMGGDRDGNPNVTPAVTREVSFTARREAA LYLKD+  L MELS TKCSQELR+VVG SREPYRVICRQL  DLE TI+MLQ+M+DG +EP VE LPIN+R Q+LEPLMMMYKSLVSTGQ+ALATGPLVDSIRRVGCFG+CLAPLDLRQESTRHTEAMDAITRYLGVGSYAQWDE TRQSW
Sbjct:  249 EVRRNKPVPQDEARAGMAVIERVLWDAVPAYLRRLDGVLKETVGKTLPIHAAPVVFASWMGGDRDGNPNVTPAVTREVSFTARREAAKLYLKDINALTMELSTTKCSQELREVVGSSREPYRVICRQLGNDLEATIEMLQDMMDGTLEPCVEDLPINTRAQILEPLMMMYKSLVSTGQKALATGPLVDSIRRVGCFGICLAPLDLRQESTRHTEAMDAITRYLGVGSYAQWDEETRQSW 487
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BLAST of mRNA_Ecto-sp13_S_contig16036.4417.1 vs. uniprot
Match: A0A0A0V6T3_SACJA (Phosphoenolpyruvate carboxylase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A0A0V6T3_SACJA)

HSP 1 Score: 402 bits (1034), Expect = 1.740e-131
Identity = 198/239 (82.85%), Postives = 215/239 (89.96%), Query Frame = 1 
Query:    1 QVRRIKPVPQDEARAGIAVIEQVLWDAVPAYLRRLDGVLTETVGKSLPIQAAPVVFASWMGGDRDGNPNVTPAVTREVSFTARREAATLYLKDVKGLNMELSATKCSQELRDVVGDSREPYRVICRQLEKDLEETIDMLQEMIDGEMEPDVEALPINSRTQLLEPLMMMYKSLVSTGQRALATGPLVDSIRRVGCFGVCLAPLDLRQESTRHTEAMDAITRYLGVGSYAQWDETTRQSW 717
            +VRRIKP PQDEARAGIAVIEQVLWDAVPAYLRRLDGVL+ETVGK+LPI A+PVVFASWMGGDRDGNPNVTP VTREVSFTARREAA LYLKDVKGL MELS TKCS ELR+ VGDSREPYR+IC +LE DL ET+  LQ MIDG    D++ +PI +R Q+LEPLMMMYKSLV+TGQ+ALATGPLVD+IRR  CFGVCLAPLD+RQESTRHTEAMDAITRYLGVGSYAQWDE TRQSW
Sbjct:  249 EVRRIKPTPQDEARAGIAVIEQVLWDAVPAYLRRLDGVLSETVGKTLPIHASPVVFASWMGGDRDGNPNVTPEVTREVSFTARREAAALYLKDVKGLKMELSTTKCSTELREAVGDSREPYRIICTKLETDLRETMLGLQAMIDGTRPMDIQEVPIKTRNQILEPLMMMYKSLVTTGQKALATGPLVDAIRRARCFGVCLAPLDIRQESTRHTEAMDAITRYLGVGSYAQWDEQTRQSW 487
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BLAST of mRNA_Ecto-sp13_S_contig16036.4417.1 vs. uniprot
Match: A0A097IUD4_9PHAE (Phosphoenolpyruvate carboxylase n=5 Tax=Sargassum TaxID=3015 RepID=A0A097IUD4_9PHAE)

HSP 1 Score: 379 bits (973), Expect = 1.980e-122
Identity = 182/239 (76.15%), Postives = 210/239 (87.87%), Query Frame = 1 
Query:    1 QVRRIKPVPQDEARAGIAVIEQVLWDAVPAYLRRLDGVLTETVGKSLPIQAAPVVFASWMGGDRDGNPNVTPAVTREVSFTARREAATLYLKDVKGLNMELSATKCSQELRDVVGDSREPYRVICRQLEKDLEETIDMLQEMIDGEMEPDVEALPINSRTQLLEPLMMMYKSLVSTGQRALATGPLVDSIRRVGCFGVCLAPLDLRQESTRHTEAMDAITRYLGVGSYAQWDETTRQSW 717
            +VRR KP PQDEARAGIAVIE VLW AVP+YLRRLDGVL ET+GK+LPI A P+ FASWMGGDRDGNPNVTP VTREVSFTAR+EAA LYL+DV+ L +ELS TKC+ ELR+VVG++REPYR IC QLE DL  T+D LQ M+DG +EPDV+ALPI+S+ Q+LEPL+MM++SL++TGQ A A GP+VD IRRV CFGVCLAPLD+RQESTRHTEA+DAITRYLGVGSYAQWDE TRQSW
Sbjct:  250 EVRRNKPTPQDEARAGIAVIEHVLWAAVPSYLRRLDGVLMETMGKTLPIHACPIAFASWMGGDRDGNPNVTPEVTREVSFTARKEAAILYLRDVRDLRIELSTTKCTPELREVVGETREPYRKICSQLEHDLSATVDALQGMVDGHLEPDVQALPIHSQKQILEPLLMMHESLLATGQEAQANGPIVDVIRRVRCFGVCLAPLDIRQESTRHTEALDAITRYLGVGSYAQWDEKTRQSW 488
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BLAST of mRNA_Ecto-sp13_S_contig16036.4417.1 vs. uniprot
Match: A0A4D9DD20_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DD20_9STRA)

HSP 1 Score: 281 bits (720), Expect = 3.710e-87
Identity = 138/242 (57.02%), Postives = 186/242 (76.86%), Query Frame = 1 
Query:    4 VRRIKPVPQDEARAGIAVIEQVLWDAVPAYLRRLDGVLTETVGKSLPIQAAPVVFASWMGGDRDGNPNVTPAVTREVSFTARREAATLYLKDVKGLNMELSATKCSQELRDVVG-DSREPYRVICRQLEKDLEETIDMLQEMI--DGEMEP-DVEALPINSRTQLLEPLMMMYKSLVSTGQRALATGPLVDSIRRVGCFGVCLAPLDLRQESTRHTEAMDAITRYLGVGSYAQWDETTRQSW 717
            +RR KP P DEAR+G+AV+EQVLWDAVP++LR+LD  +  T+GK LPI AAPV FASWMGGDRDGNP VTP +TR V+  AR +A  L ++D++ L M LS+TKCS+ELR VVG D+REPYR + +++E+D+E TI+ + ++   DG +   ++  LPI + +Q+L+ L+++++SL  T Q  +A G L D+IRR+ CFGV L PLD+RQEST HTE +DA+TRYLG+GSYAQWDE TR SW
Sbjct:  256 IRRTKPTPVDEARSGLAVVEQVLWDAVPSFLRKLDATMQMTLGKRLPITAAPVCFASWMGGDRDGNPFVTPQITRTVALRARWQAMRLLIRDIRELKMVLSSTKCSEELRIVVGKDAREPYRDVVKEIEEDVEATIESINDLFASDGTLAATEIPELPIMTTSQVLDKLLLLHRSLCETQQGLIADGLLTDTIRRLKCFGVTLLPLDVRQESTVHTETLDAVTRYLGLGSYAQWDEETRMSW 497
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BLAST of mRNA_Ecto-sp13_S_contig16036.4417.1 vs. uniprot
Match: A0A835YNR8_9STRA (Phosphoenolpyruvate carboxylase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNR8_9STRA)

HSP 1 Score: 283 bits (724), Expect = 3.260e-86
Identity = 140/241 (58.09%), Postives = 179/241 (74.27%), Query Frame = 1 
Query:    1 QVRRIKPVPQDEARAGIAVIEQVLWDAVPAYLRRLDGVLTETVGKSLPIQAAPVVFASWMGGDRDGNPNVTPAVTREVSFTARREAATLYLKDVKGLNMELSATKCSQELRDVVGDS--REPYRVICRQLEKDLEETIDMLQEMIDGEMEPDVEALPINSRTQLLEPLMMMYKSLVSTGQRALATGPLVDSIRRVGCFGVCLAPLDLRQESTRHTEAMDAITRYLGVGSYAQWDETTRQSW 717
            +VRR KP PQDEARA +AVI+QVLW+AVP++LR+LD VL   +GK LP   APV+F SW GGDRDGNPNVTP VT EVSF AR +AA+L  +DV+ L MELS TKC+ ELR+  G    REPYR I + LE  LE T++ + +M+ G+    VE L +  + ++L+ L ++++SL +T Q A+A G L D IRRV CFG+ LAPLD+RQES RH+EA+DAITR+LGVGSY QWDE TR +W
Sbjct:  206 EVRRFKPKPQDEARASMAVIDQVLWEAVPSWLRKLDAVLVNAIGKPLPTDVAPVIFGSWCGGDRDGNPNVTPEVTMEVSFRARWQAASLLRQDVEKLRMELSTTKCTPELREAAGGPAVREPYREIVKTLEARLERTLEQIDDMLKGKAVFSVEDLELKDKQEVLDTLNLLHRSLEATNQAAMANGLLKDVIRRVACFGLVLAPLDIRQESVRHSEALDAITRWLGVGSYLQWDEETRTTW 446
[Close]
BLAST of mRNA_Ecto-sp13_S_contig16036.4417.1 vs. uniprot
Match: W7TGA1_9STRA (Phosphoenolpyruvate carboxylase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TGA1_9STRA)

HSP 1 Score: 281 bits (719), Expect = 3.640e-85
Identity = 138/242 (57.02%), Postives = 186/242 (76.86%), Query Frame = 1 
Query:    4 VRRIKPVPQDEARAGIAVIEQVLWDAVPAYLRRLDGVLTETVGKSLPIQAAPVVFASWMGGDRDGNPNVTPAVTREVSFTARREAATLYLKDVKGLNMELSATKCSQELRDVVG-DSREPYRVICRQLEKDLEETIDMLQEMI--DGEMEP-DVEALPINSRTQLLEPLMMMYKSLVSTGQRALATGPLVDSIRRVGCFGVCLAPLDLRQESTRHTEAMDAITRYLGVGSYAQWDETTRQSW 717
            +RR KP P DEAR+G+AV+EQVLWDAVP++LR+LD  +  T+GK LPI AAPV FASWMGGDRDGNP VTP +TR V+  AR +A  L ++D++ L M LS+TKCS+ELR VVG D+REPYR + +++E+D+E TI+ + ++   DG +   ++  LPI + +Q+L+ L+++++SL  T Q  +A G L D+IRR+ CFGV L PLD+RQEST HTE +DA+TRYLG+GSYAQWDE TR SW
Sbjct:  256 IRRTKPTPVDEARSGLAVVEQVLWDAVPSFLRKLDATVQMTLGKRLPITAAPVCFASWMGGDRDGNPFVTPQITRTVALRARWQAMRLLIRDIRELKMVLSSTKCSEELRIVVGKDAREPYRDVVKEIEEDVEATIESINDLFASDGTLAATEIPELPIMTTSQVLDKLLLLHRSLCETQQGLIADGLLTDTIRRLKCFGVTLLPLDVRQESTVHTETLDAVTRYLGLGSYAQWDEETRMSW 497
[Close]
BLAST of mRNA_Ecto-sp13_S_contig16036.4417.1 vs. uniprot
Match: A0A3L7DZJ0_9GAMM (Phosphoenolpyruvate carboxylase n=4 Tax=Proteobacteria TaxID=1224 RepID=A0A3L7DZJ0_9GAMM)

HSP 1 Score: 243 bits (619), Expect = 2.910e-71
Identity = 126/236 (53.39%), Postives = 160/236 (67.80%), Query Frame = 1 
Query:    7 RRIKPVPQDEARAGIAVIEQVLWDAVPAYLRRLDGVLTETVGKSLPIQAAPVVFASWMGGDRDGNPNVTPAVTREVSFTARREAATLYLKDVKGLNMELSATKCSQELRDVVGDSREPYRVICRQLEKDLEETIDMLQEMIDGEMEPDVEALPINSRTQLLEPLMMMYKSLVSTGQRALATGPLVDSIRRVGCFGVCLAPLDLRQESTRHTEAMDAITRYLGVGSYAQWDETTRQS 714
            RR +P P DEA+ G AV+E+ LW AVP +LRRLD  L +  G SLP++AAPV F SWMGGDRDGNPNVT  VTREV   +R +AA LYL DV GL  ELS T+CS ELR++ GD+ EPYR I R+L   L +T+  ++  + GE  P VE L  +   QL +PL+  Y+SL+  G   +A   L+D +RRV CFGV L   D+RQ+S RHTEA+  ITR LG+G YA WDE  R++
Sbjct:  197 RRERPTPVDEAKWGFAVVEESLWRAVPEFLRRLDDALEQQCGLSLPLEAAPVSFVSWMGGDRDGNPNVTAEVTREVMLLSRWQAAQLYLGDVTGLLDELSMTRCSDELRELAGDAHEPYRAILRRLRGMLRDTLASIEAQLRGEPAPAVEILQRSE--QLWQPLLACYRSLMECGMGIIARRTLLDVMRRVRCFGVHLVRHDIRQDSARHTEALSEITRCLGLGDYADWDEDARRA 430
[Close]
BLAST of mRNA_Ecto-sp13_S_contig16036.4417.1 vs. uniprot
Match: A0A2N5X5G2_9GAMM (Phosphoenolpyruvate carboxylase n=1 Tax=Pseudohalioglobus lutimaris TaxID=1737061 RepID=A0A2N5X5G2_9GAMM)

HSP 1 Score: 241 bits (616), Expect = 7.810e-71
Identity = 126/236 (53.39%), Postives = 157/236 (66.53%), Query Frame = 1 
Query:    7 RRIKPVPQDEARAGIAVIEQVLWDAVPAYLRRLDGVLTETVGKSLPIQAAPVVFASWMGGDRDGNPNVTPAVTREVSFTARREAATLYLKDVKGLNMELSATKCSQELRDVVGDSREPYRVICRQLEKDLEETIDMLQEMIDGEMEPDVEALPINSRTQLLEPLMMMYKSLVSTGQRALATGPLVDSIRRVGCFGVCLAPLDLRQESTRHTEAMDAITRYLGVGSYAQWDETTRQS 714
            RR +P P DEA+ G AV+E+ LW AVP ++RRLD  L +  G+ LP+ AAPV F SWMGGDRDGNPNVT AVTREV   +R +A  LYL DV  L  ELS T+CS  LR++ GD+ EPYR I RQL K L  T + ++  + GE    VEA  + +  QL EPL+  Y SL   G   +A G L+D +RRV CFGV L   D+RQ+S RHTEA+  ITR LG+G YA WDE TR++
Sbjct:  197 RRERPTPVDEAKWGFAVVEESLWRAVPEFMRRLDDALEQHCGQRLPLDAAPVSFVSWMGGDRDGNPNVTAAVTREVMLLSRWQATDLYLGDVNRLLEELSVTRCSDSLRELAGDAHEPYRAILRQLRKLLRRTREHIEIRLRGET--PVEADILVTEAQLWEPLLACYHSLTECGMEIIARGTLLDVLRRVRCFGVYLVRHDIRQDSARHTEALSEITRSLGLGDYADWDEDTRRA 430
[Close]
BLAST of mRNA_Ecto-sp13_S_contig16036.4417.1 vs. uniprot
Match: B7RYI0_9GAMM (Phosphoenolpyruvate carboxylase n=1 Tax=marine gamma proteobacterium HTCC2148 TaxID=247634 RepID=B7RYI0_9GAMM)

HSP 1 Score: 240 bits (613), Expect = 2.100e-70
Identity = 123/236 (52.12%), Postives = 157/236 (66.53%), Query Frame = 1 
Query:    7 RRIKPVPQDEARAGIAVIEQVLWDAVPAYLRRLDGVLTETVGKSLPIQAAPVVFASWMGGDRDGNPNVTPAVTREVSFTARREAATLYLKDVKGLNMELSATKCSQELRDVVGDSREPYRVICRQLEKDLEETIDMLQEMIDGEMEPDVEALPINSRTQLLEPLMMMYKSLVSTGQRALATGPLVDSIRRVGCFGVCLAPLDLRQESTRHTEAMDAITRYLGVGSYAQWDETTRQS 714
            RR +P P DEA+ G AV+E+ LW AVP +LRRLD  L +     LP++AAPV F SWMGGDRDGNPNVT  VTREV   +R +AA LYL D+  L  ELS T+C+  LR + GD+ EPYR I R++ K L  TI  +++ + GE  P  EA  + S  QL +PL+  Y+SL   G   +A G L+D +RR+ CFGV L   D+RQ+S RHTEAM  ITR LG+G YA WDE TR++
Sbjct:  197 RRERPTPVDEAKWGFAVVEESLWRAVPEFLRRLDDALAQHCNSHLPLEAAPVNFVSWMGGDRDGNPNVTAEVTREVMLLSRWQAADLYLGDINQLLEELSMTRCNAALRSLAGDAHEPYRAILREIRKLLRNTIASIEQQLVGE--PAGEAEVLQSEQQLWQPLLACYQSLTECGMEIIAGGSLLDVLRRIRCFGVHLVRHDIRQDSARHTEAMSEITRCLGLGDYADWDEETRRA 430
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16036.4417.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTN1_ECTSI2.140e-15697.07Phosphoenolpyruvate carboxylase n=2 Tax=Ectocarpus... [more]
A0A097IUC8_9PHAE1.260e-13887.03Phosphoenolpyruvate carboxylase n=2 Tax=Scytosipho... [more]
A0A0A0V6T3_SACJA1.740e-13182.85Phosphoenolpyruvate carboxylase n=1 Tax=Saccharina... [more]
A0A097IUD4_9PHAE1.980e-12276.15Phosphoenolpyruvate carboxylase n=5 Tax=Sargassum ... [more]
A0A4D9DD20_9STRA3.710e-8757.02Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A835YNR8_9STRA3.260e-8658.09Phosphoenolpyruvate carboxylase n=1 Tax=Tribonema ... [more]
W7TGA1_9STRA3.640e-8557.02Phosphoenolpyruvate carboxylase n=1 Tax=Nannochlor... [more]
A0A3L7DZJ0_9GAMM2.910e-7153.39Phosphoenolpyruvate carboxylase n=4 Tax=Proteobact... [more]
A0A2N5X5G2_9GAMM7.810e-7153.39Phosphoenolpyruvate carboxylase n=1 Tax=Pseudohali... [more]
B7RYI0_9GAMM2.100e-7052.12Phosphoenolpyruvate carboxylase n=1 Tax=marine gam... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16036contigEcto-sp13_S_contig16036:3..3513 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score465.7
Seed ortholog evalue1.3e-128
Seed eggNOG ortholog2880.D8LTN1
Model size717
KEGG rclassRC02741
KEGG koko:K01595
KEGG ReactionR00345
KEGG Pathwayko00620,ko00680,ko00710,ko00720,ko01100,ko01120,ko01200,map00620,map00680,map00710,map00720,map01100,map01120,map01200
KEGG ModuleM00168,M00170,M00171,M00172,M00173,M00346,M00374
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.phosphoenolpyruvate carboxylase activity
EggNOG OGs2QPVS@2759,COG2352@1
Ec32 ortholog descriptionphosphoenolpyruvate carboxylase
Ec32 orthologEc-28_003470.1
EC4.1.1.31
Cds size717
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16036.4417.1prot_Ecto-sp13_S_contig16036.4417.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16036 3..3513 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462847.0218585-CDS-Ecto-sp13_S_contig16036:2..981681462847.0218585-CDS-Ecto-sp13_S_contig16036:2..98Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16036 3..98 -
1681462847.0464437-CDS-Ecto-sp13_S_contig16036:373..5111681462847.0464437-CDS-Ecto-sp13_S_contig16036:373..511Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16036 374..511 -
1681462847.0578258-CDS-Ecto-sp13_S_contig16036:1259..13221681462847.0578258-CDS-Ecto-sp13_S_contig16036:1259..1322Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16036 1260..1322 -
1681462847.068601-CDS-Ecto-sp13_S_contig16036:2169..22751681462847.068601-CDS-Ecto-sp13_S_contig16036:2169..2275Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16036 2170..2275 -
1681462847.0779426-CDS-Ecto-sp13_S_contig16036:2787..29101681462847.0779426-CDS-Ecto-sp13_S_contig16036:2787..2910Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16036 2788..2910 -
1681462847.0861857-CDS-Ecto-sp13_S_contig16036:3322..35131681462847.0861857-CDS-Ecto-sp13_S_contig16036:3322..3513Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16036 3323..3513 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16036.4417.1

>prot_Ecto-sp13_S_contig16036.4417.1 ID=prot_Ecto-sp13_S_contig16036.4417.1|Name=mRNA_Ecto-sp13_S_contig16036.4417.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=239bp
QVRRIKPVPQDEARAGIAVIEQVLWDAVPAYLRRLDGVLTETVGKSLPIQ
AAPVVFASWMGGDRDGNPNVTPAVTREVSFTARREAATLYLKDVKGLNME
LSATKCSQELRDVVGDSREPYRVICRQLEKDLEETIDMLQEMIDGEMEPD
VEALPINSRTQLLEPLMMMYKSLVSTGQRALATGPLVDSIRRVGCFGVCL
APLDLRQESTRHTEAMDAITRYLGVGSYAQWDETTRQSW
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mRNA from alignment at Ecto-sp13_S_contig16036:3..3513-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16036.4417.1 ID=mRNA_Ecto-sp13_S_contig16036.4417.1|Name=mRNA_Ecto-sp13_S_contig16036.4417.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3511bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16036:3..3513- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTTCGCAGGATCAAGCCGGTACCGCAGGACGAGGCCCGCGCGGGCAT
TGCGGTGATCGAGCAGGTGCTGTGGGACGCCGTTCCCGCTTACCTCCGCC
GTCTGGACGGCGTCCTCACGGAGACCGTAGGGAAGAGTCTTCCCATCCAG
GCGGCCCCCGTCGTGTTCGCTTCGTGGATGGGAGGAGACAGGTGAACCCC
CCGAGCGCCTCGGCGCTATTGTTGTTGGAGGTGGATTCTGTGAAGGTGGA
GTGGTTTTGTTGGACTATTTGTGGTTGCATCTTGATCGTCGGAAGTCCTG
TCAAAGACGTCTCACGGCAGTTGATACGGAGGCTTCTTTCCCCGCTTTGT
CATCGGGCGACACCCGGGTGTCCGGTTCCTTGTTGACGGTACCCCTAACG
TGGCGCCGGCAGCGATGGGCATGAACAGTGGTCCGTTTCTTTCGGGCTTT
CGGCGAAAAACGAGAGAAACTGCTGTACACGTGTAGTTGTAAGCCTTATC
TCCAAAGTAGCGTCTCTAGCGAGGAAATATGAAATGAAAACTTTCACCTC
AATGGAAGCTGACGTTTTCCACGACGATCGTTCGCGCGCTGGGTGTGTCG
CAGGGACGGCAACCCGAACGTTACTCCTGCGGTAACCCGCGAGGTGTCAT
TCACGGCTCGTCGTGAGGCCGCCACCCTCTACCTGAAGGACGTCAAAGGC
TTGAACATGGAACTCAGCGCCACCAAGTGAGGGAGGGTTACTGTACTTGC
CTGCCTGCTGCCAACTCGCGTGACTTTCCCTTAAAGCGTTGCTGACTTTA
CTCGATTCGCACTCCTTGTGTGGTGCTGGGTTGCTGCTTCCTCACTTCGC
AAACCTCAATAGTGTTGCTGGGTTGCTGCTCACGCACTTCGGAAACTTGT
AGCTTGTGTTGCGTCTGTGTCTGATCTCAGGGAGTGGTTGCTGCAGATCC
CCTTTCTGATGGATTGAAACCCATGGAGTTCGTTTACATTCCGACCCATG
TTTCGTCTTGACCCCATAGATGGAACCCAACACCTTTGAGAAAGGATTGT
CCACTTCTACAAGGGTGGAGTTTGCCCTATTTTACACTAAATTGGTTCAA
GCTTCAAGCATGAAAGCGACGTGGAGTTGGGAAGCCCGGCGCAAATCTGT
GGAATGTGTTTCTGTTACATTTCCTTTATTTGTTGTTGTTGTTGTTATCG
TGTTGCTGGTGCGTTTTCCGCGCTCGTTTGTTGGTCAGGTGCTCGCAAGA
GCTTCGCGATGTTGTCGGCGATTCGCGCGAGCCTTACCGCGTCATCTGCA
GGCAGCTCGAGAAGGACCTCGAGGAGACGATCGACATGCTACAGGTCAGC
GTTTTTTTTTTGCGTTAGCGAACCGAATGATCGATCGACACTGGAGACGA
ATAGACATCGACCTGGTTCTACTAGTTGTGTGCCTCAGGTCTATCGAAAC
TGCACTGACGCTATTTTTCGCTCCTTCTGCTAAGTGAGAGTCCAATTTAG
AGCTCGCAGTACGGACTAGAGCATTTTGACGGACGTGGTCACTCCCTCTT
CCCCTGAGGGGCCATCGCCTCCGCCCGATTCCTGCGCTGCTTTTGCGTGG
CCTGATGGTATATAGTATAGTGCCTGTGCAGCCCTGAGGCAATCTTCACT
CGGGCTTGAAATGTATTCCCGTTCCCTATTTTCGGCTTCCGATCTCTTCG
TTATGGGAAAAGTAGCGTGATACAAGTACGTACACGAACTAGAGGGGTGG
CGGGCACGCCCTAACCTACGCTGAATCCATGAAGATGAAAACTGGAAATG
TGTCGGTGGTGACTGCATGCAGTAACTCGATCGACCCCAGAAATGATTTT
GCATGCCGCCTGCCTGAGTAAGGCAGCCTCTTTAGTTGGGACTTTTGCTT
CGCGCCGGTGTTATGGTCCTCTGTGTTTTAATTTGTTTATGTTCACGGCA
TGGTTGAATAGCAATCAAATGAAGGGAAACGTAGGACGCCGGGCCGTGCT
CCCGCCATTGGTTGTCGTCGATTCGCCGAATCCAGCAACACCAGCGCGTC
AACCGCAAGGTAGTACGTGACTTTTATGCCATGTCATGCCCGTCTGCCAT
GCCCTCGTACCTTATGATGGACATGTACCATCTCTCGTGTTTCTTGTCTT
GCCGCCGCTGCTCTCCGTTTTGTTTTTTTTCTACACCGTAGGAGATGATC
GATGGAGAAATGGAGCCCGATGTGGAAGCCCTCCCCATAAACTCTCGCAC
CCAGGTCAAGTCGTCCGTCAGTCCGTCCGAACGAGCAGCAGTGTTGTGAC
CAGAACTGCGGGGACGCAGTTGTAACGCTGATCCTTTTTAGTCCTGGAGA
TGTTGATGTCGGCTCTGCCGACCATGCCCAAGCACATTTCCACCTTACAG
TAGTTGTTGTCACGTCCATTGCTTTTCTTGCGCAAATGCAGGAGCCTGCC
CTGGATGATACCGCCTGGAGATGTTGTTTCTCCGCCACGCCCACGCCATG
GTTCTGTGTTCTCTCTGCCGTTCTTTCACGGTTTCCGGGTCTTTTTCGTG
TCCTGTATCTAGATAACATGTGTACAGTCGGGGGCCACAAAGATGCAGGC
TACTCTCCTCAAGCTCCTGTTATTTGGGCGCCCTCCATAGCTTCGAACCC
TAGCACGGAAACCTTGCATGTGTATGTACAACACTTTAAAGGGCTTTGGT
TGTTTTTTCGTGGTGACGATATTCTTTTCTTTTCTCTGAGTCGTTGTTTT
TCTCGCCGCACGAAGTGTTGAGCGGCTCCGCCGACCATGAACCGATGGCA
ATAGCAAGTACCACAAACAATTCACGTAGCAAATGAAACTGCAATACGAG
GACTGGCTTCGCTCCCAAGGCCTCTTCGTTGTCCGTCCAGGCAAGAAGAA
CTGAATCCCCTGGCCCCGTCATGTCTCCTCGTGCCTTGCTTTTTGGCCTG
CCATGCTATGCTATGCCGTGCCGTGCCGTGCCGTGTCATGCCACCGCAAC
AGCTCTTGGAGCCCCTCATGATGATGTACAAGTCCCTGGTCTCAACGGGT
CAGAGGGCGTTGGCCACGGGCCCCCTCGTGGACTCAATCCGCCGCGTTGG
GTGCTTCGGCGTCTGCCTCGCGCCCCTCGACCTTCGCCAGGTGAGTGATT
TATTCCGTTAGATGTGCGTAACTGCGCGTTGTGATAGATCGATGTGTTTC
GGGGTGGCCAAGCCCCATCCATGTCGCAACATGTCACACCGGTGACGGTG
CCATGCAGCCGTTATAGTATCACGCTACGCCGTCGATTCCTGCCGCATGG
TATGACTCGATGACATACCACACAACACACACTGTCTGGAGAACGATTTT
ACCCTAGGCTGGTGTAATTGTATTTCTGAGCGGAACTTCGATCGGCACGT
GCTTTGCTCTGGCAGGAATCCACCCGTCACACGGAGGCCATGGACGCCAT
CACTCGGTACCTCGGGGTGGGCTCGTACGCCCAGTGGGACGAGACGACAC
GGCAGTCGTGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16036:3..3513-

>mRNA_Ecto-sp13_S_contig16036.4417.1 ID=mRNA_Ecto-sp13_S_contig16036.4417.1|Name=mRNA_Ecto-sp13_S_contig16036.4417.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=717bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16036:3..3513- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTTCGCAGGATCAAGCCGGTACCGCAGGACGAGGCCCGCGCGGGCAT
TGCGGTGATCGAGCAGGTGCTGTGGGACGCCGTTCCCGCTTACCTCCGCC
GTCTGGACGGCGTCCTCACGGAGACCGTAGGGAAGAGTCTTCCCATCCAG
GCGGCCCCCGTCGTGTTCGCTTCGTGGATGGGAGGAGACAGGGACGGCAA
CCCGAACGTTACTCCTGCGGTAACCCGCGAGGTGTCATTCACGGCTCGTC
GTGAGGCCGCCACCCTCTACCTGAAGGACGTCAAAGGCTTGAACATGGAA
CTCAGCGCCACCAAGTGCTCGCAAGAGCTTCGCGATGTTGTCGGCGATTC
GCGCGAGCCTTACCGCGTCATCTGCAGGCAGCTCGAGAAGGACCTCGAGG
AGACGATCGACATGCTACAGGAGATGATCGATGGAGAAATGGAGCCCGAT
GTGGAAGCCCTCCCCATAAACTCTCGCACCCAGCTCTTGGAGCCCCTCAT
GATGATGTACAAGTCCCTGGTCTCAACGGGTCAGAGGGCGTTGGCCACGG
GCCCCCTCGTGGACTCAATCCGCCGCGTTGGGTGCTTCGGCGTCTGCCTC
GCGCCCCTCGACCTTCGCCAGGAATCCACCCGTCACACGGAGGCCATGGA
CGCCATCACTCGGTACCTCGGGGTGGGCTCGTACGCCCAGTGGGACGAGA
CGACACGGCAGTCGTGG
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