mRNA_Ecto-sp13_S_contig1603.4414.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1603.4414.1
Unique NamemRNA_Ecto-sp13_S_contig1603.4414.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1603.4414.1 vs. uniprot
Match: D7FXH6_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXH6_ECTSI)

HSP 1 Score: 225 bits (573), Expect = 8.370e-67
Identity = 114/126 (90.48%), Postives = 117/126 (92.86%), Query Frame = 2
Query:  515 DGASPRVVRMLLDAGADVTSTCSLPGGISRSPLSQCESNIRSKFCQGLPATEEQLNRLEAIRRSLLRVEAIYAFSWLWCSNIPCIAPAAEEVVGACEKSRSPRKARMLILWRRSGARRVLMPASLR 892
            +GASPRVVRMLLDAGADVTSTCSLPGGISRSPLSQCESNIRSKFCQ LPATEEQLN L+AIRR LLRVEAIYA SWLWCSNIPCIAPAA EV GAC KSR PRKARMLI WRR+GARRVLMPASLR
Sbjct:  348 EGASPRVVRMLLDAGADVTSTCSLPGGISRSPLSQCESNIRSKFCQALPATEEQLNGLQAIRRLLLRVEAIYASSWLWCSNIPCIAPAAREVEGACGKSRIPRKARMLISWRRTGARRVLMPASLR 473          
BLAST of mRNA_Ecto-sp13_S_contig1603.4414.1 vs. uniprot
Match: D8LSC5_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSC5_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 2.160e-20
Identity = 61/128 (47.66%), Postives = 80/128 (62.50%), Query Frame = 2
Query:  524 SPRVVRMLLDAGADVTSTC---SLPGGI--SRSPLSQCESNIRSKFCQGLPATEEQLNRLEAIRRSLLRVEAIYAFSWLWCSNIPCIAPAAEEVVGACEKSRSPRKARMLILWRRSGARRVLMPASLR 892
            +PR+VR+L+DAGAD TST    +L GG+  + +PL+   S +R K   G PATEEQL+RL+AIRR LLRV+A++A SWLW S+ P I  A E   G  E  R P    + IL RR+    V +   LR
Sbjct:   77 NPRIVRLLVDAGADTTSTVRVTNLNGGVEYNDTPLAVTTSLLREKVVDGKPATEEQLHRLQAIRRLLLRVDAVHAVSWLWPSDAPSIVHAVERSCGP-EPRRPPLSLTLPILKRRAKTCHVFVATLLR 203          
BLAST of mRNA_Ecto-sp13_S_contig1603.4414.1 vs. uniprot
Match: D8LL76_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL76_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 6.480e-14
Identity = 50/127 (39.37%), Postives = 66/127 (51.97%), Query Frame = 2
Query:  524 SPRVVRMLLDAGADVTSTCSLPGGISRS----PLSQCESNIRSKFCQGLPATEEQLNRLEAIRRSLLRVEAIYAFSWLWCSNIPCIAPAAEEVVGACEKSRSPRKARMLILWRRSGARRVLMPASLR 892
            SPRVVR+L+DAGAD T    +P G  RS    PL      +  K      AT +QL  L A RR LL+VE ++A SWLW  +  C A   ++       +  P K+R+ I+WRRS  R   +P   R
Sbjct:  297 SPRVVRLLVDAGADATLAVRVPDGFGRSTKYTPLDCATRCLAEKVVDEDFATAQQLRNLRASRRLLLQVEVVHATSWLWGGHAGCPAAPGKKRAQTESTNGKPLKSRLPIMWRRSARRGAALPGVFR 423          
BLAST of mRNA_Ecto-sp13_S_contig1603.4414.1 vs. uniprot
Match: D7FT11_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT11_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 1.510e-13
Identity = 47/93 (50.54%), Postives = 61/93 (65.59%), Query Frame = 2
Query:  524 SPRVVRMLLDAGADVTS---TCSLPGGI--SRSPLSQCESNIRSKF-CQGLPATEEQLNRLEAIRRSLLRVEAIYAFSWLWCSNIPCIAPAAE 784
            +PR+VRML+DAGAD TS     +L GG+  + +PL+  +  +R K    G PAT+E L RLEAI R LLRV+A++A SWLW S  P I  A E
Sbjct:  397 APRIVRMLVDAGADTTSPVQVMNLKGGVVFNDTPLAFTKLRLRKKIVADGKPATKEHLQRLEAICRLLLRVDAVHAVSWLWPSGAPFIGRATE 489          
BLAST of mRNA_Ecto-sp13_S_contig1603.4414.1 vs. uniprot
Match: A0A6H5L2D2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2D2_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 6.280e-13
Identity = 48/123 (39.02%), Postives = 65/123 (52.85%), Query Frame = 2
Query:  524 SPRVVRMLLDAGADVTSTCSLPGGISRS----PLSQCESNIRSKFCQGLPATEEQLNRLEAIRRSLLRVEAIYAFSWLWCSNIPCIAPAAEEVVGACEKSRSPRKARMLILWRRSGARRVLMP 880
            SPRVVR+L+DAG D T    +P G  RS    PL      +  +      AT +QL  L A RR LL+VEA++A SWLW  +  C A   ++       +  P K+R+ I+WRRS  R   +P
Sbjct:  259 SPRVVRLLVDAGPDATLAVRVPDGFGRSTKYTPLDCATRCLAERVVDEDYATAQQLRNLRASRRLLLQVEALHATSWLWGGHAGCPAALGKKRAQTELTNGKPLKSRLPIMWRRSARRGATLP 381          
BLAST of mRNA_Ecto-sp13_S_contig1603.4414.1 vs. uniprot
Match: A0A6H5KJA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJA9_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 3.340e-12
Identity = 56/130 (43.08%), Postives = 77/130 (59.23%), Query Frame = 2
Query:  527 PRVVRMLLDAGADVTSTCSLP---GG--ISRSPLSQCESNIRSKFC---QGLPATEEQLNRLEAIRRSLLRVEAIYAFSWLWCSNIPCIAPAAEEVVGACEKSRSPRKARMLILWRRSGARRVLMPASLR 892
            PRVVR+L++AGAD TS  ++    GG  +S +PL    + +R K     +G PA+ EQL++LEAIRR LLRVEA++A SWLW S+I  I  AA           +     ML+  RR+  R+V + A LR
Sbjct:  302 PRVVRLLVEAGADTTSPVAVRNQLGGDDVSITPLGLTMNPVRDKVKVVGRG-PASPEQLHKLEAIRRLLLRVEAVHAVSWLWPSDISTITRAAARGTDRTTAISTAVTLPMLVTRRRARGRKVPLAALLR 430          
BLAST of mRNA_Ecto-sp13_S_contig1603.4414.1 vs. uniprot
Match: D7FVU0_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVU0_ECTSI)

HSP 1 Score: 73.6 bits (179), Expect = 4.200e-11
Identity = 44/94 (46.81%), Postives = 60/94 (63.83%), Query Frame = 2
Query:  524 SPRVVRMLLDAGADVTSTC---SLPGGI--SRSPLSQCESNIRSKFCQ-GLPATEEQLNRLEAIRRSLLRVEAIYAFSWLWCSNIPCIAPAAEE 787
            +PR+VR+L++AGAD TS     +  G +  + +PL+   S +  K    G PATEE L RLEAIRR LLR EA++A SWLW S+   +  AAE+
Sbjct:  285 TPRIVRLLINAGADTTSVIRGTNSEGEVQCNGTPLALTTSYLWEKILDNGEPATEEHLQRLEAIRRLLLRAEAVHAVSWLWPSDASFVGHAAEK 378          
BLAST of mRNA_Ecto-sp13_S_contig1603.4414.1 vs. uniprot
Match: D7G1Y3_ECTSI (EsV-1-199 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1Y3_ECTSI)

HSP 1 Score: 73.6 bits (179), Expect = 4.240e-11
Identity = 50/125 (40.00%), Postives = 69/125 (55.20%), Query Frame = 2
Query:  527 PRVVRMLLDAGADVTSTCSLPG-----GISRSPLSQCESNIRSKFCQGLPATEEQLNRLEAIRRSLLRVEAIYAFSWLWCSNIP-CIAPAAEEVVGACEKSRSPRKARMLILWRRSGARRVLMPA 883
            PR+VR+L+D+GAD  S           G S +PL +    +R    +G    EEQL RLEA+RR LLRVEA++A SW+W S+    +A  A EV    E   +   + + IL RR+  R VL+ A
Sbjct:  244 PRIVRLLVDSGADTESAVRYTYRDGLVGFSDTPLCRTIRILRDVETEGKDDKEEQLGRLEAVRRLLLRVEAVHATSWVWPSSAAGSVAQDAAEVKAGAETEPTRLTSTLQILRRRATRRGVLLRA 368          
BLAST of mRNA_Ecto-sp13_S_contig1603.4414.1 vs. uniprot
Match: D7FXY7_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXY7_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 7.660e-11
Identity = 42/81 (51.85%), Postives = 53/81 (65.43%), Query Frame = 2
Query:  527 PRVVRMLLDAGADVTSTC---SLPGGISRSPLSQCESNIRSKFCQGLPATEEQLNRLEAIRRSLLRVEAIYAFSWLWCSNI 760
            PRVVR+L++AGAD TST     LPG  + +P+      +     +  P TEEQLN LEAI R LLRVEA++A SWLW S+I
Sbjct:  202 PRVVRLLVEAGADTTSTVPIDGLPGTDNITPMGLTMLLLHDLGTE--PLTEEQLNALEAIHRLLLRVEALHAVSWLWSSDI 280          
BLAST of mRNA_Ecto-sp13_S_contig1603.4414.1 vs. uniprot
Match: D8LPY4_ECTSI (EsV-1-199 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LPY4_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 2.840e-10
Identity = 33/66 (50.00%), Postives = 44/66 (66.67%), Query Frame = 1
Query:    1 MSWMDLHQAAAQGMVKRTSTLLSRPLANVDQRDNDGFTPLIVAAQEGHHNVVRVLLEHGAQISMAS 198
            M +  LH AA +G  K T  LL+    ++++R  DGFTPL VAAQEGHH V R+LL H A +++AS
Sbjct:    1 MPYNHLHDAALKGSAKVTEALLATAALDINERTEDGFTPLDVAAQEGHHRVARILLRHNASVTVAS 66          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1603.4414.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
D7FXH6_ECTSI8.370e-6790.48Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]
D8LSC5_ECTSI2.160e-2047.66EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D8LL76_ECTSI6.480e-1439.37EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7FT11_ECTSI1.510e-1350.54EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5L2D2_9PHAE6.280e-1339.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJA9_9PHAE3.340e-1243.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FVU0_ECTSI4.200e-1146.81EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7G1Y3_ECTSI4.240e-1140.00EsV-1-199 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1... [more]
D7FXY7_ECTSI7.660e-1151.85EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D8LPY4_ECTSI2.840e-1050.00EsV-1-199 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LP... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1603contigEcto-sp13_S_contig1603:4928..6348 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score126.7
Seed ortholog evalue1.6e-26
Seed eggNOG ortholog2880.D7FXH6
Model size894
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Ec32 ortholog descriptionAnkyrin repeat
Ec32 orthologEc-19_000070.1
Cds size804
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462846.8220818-UTR-Ecto-sp13_S_contig1603:4927..50171681462846.8220818-UTR-Ecto-sp13_S_contig1603:4927..5017Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1603 4928..5017 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462846.8375394-CDS-Ecto-sp13_S_contig1603:5017..53031681462846.8375394-CDS-Ecto-sp13_S_contig1603:5017..5303Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1603 5018..5303 -
1681462846.856548-CDS-Ecto-sp13_S_contig1603:5586..57231681462846.856548-CDS-Ecto-sp13_S_contig1603:5586..5723Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1603 5587..5723 -
1681462846.8663433-CDS-Ecto-sp13_S_contig1603:5967..63481681462846.8663433-CDS-Ecto-sp13_S_contig1603:5967..6348Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1603 5968..6348 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1603.4414.1prot_Ecto-sp13_S_contig1603.4414.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1603 5018..6348 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1603.4414.1

>prot_Ecto-sp13_S_contig1603.4414.1 ID=prot_Ecto-sp13_S_contig1603.4414.1|Name=mRNA_Ecto-sp13_S_contig1603.4414.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=268bp
MSWMDLHQAAAQGMVKRTSTLLSRPLANVDQRDNDGFTPLIVAAQEGHHN
VVRVLLEHGAQISMASYAGCTALIMTAIHGQPAVATALLDAGADVNTSDI
NGCTALYCAANHGHLSVAKILLENGAQPSLGTSTSSKSLFVQIPTLRTSW
FALLELKASSLSTWRRKMDTRRRRIPKGRANAPGRRGRCDFHLQLAWRDF
QVAPLPMREQHPQQVLSRPTRYRGATEQAGGHPPLVVASGGNLCVLLALV
QQHSLHSACCRGGGRSL*
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mRNA from alignment at Ecto-sp13_S_contig1603:4928..6348-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1603.4414.1 ID=mRNA_Ecto-sp13_S_contig1603.4414.1|Name=mRNA_Ecto-sp13_S_contig1603.4414.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1421bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1603:4928..6348- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCCTGGATGGATCTGCACCAGGCTGCCGCTCAGGGTATGGTGAAGCG CACTTCGACACTGCTCTCGAGGCCGTTGGCGAACGTAGACCAACGCGACA ACGACGGCTTCACTCCCCTCATCGTTGCAGCCCAGGAGGGGCATCACAAT GTTGTCAGGGTTCTCCTGGAGCACGGTGCCCAAATTTCGATGGCATCGTA CGCTGGGTGCACCGCTCTTATCATGACAGCCATACACGGGCAACCAGCCG TGGCGACCGCGCTACTTGATGCTGGTGCCGACGTCAACACGTCGGACATA AACGGCTGCACCGCTCTATATTGCGCCGCCAACCACGGGCATCTCAGCGT TGCCAAGATTCTCCTGGAAAATGGAGCCCAGGTGAGCATTGCAGCTGACG ACGGCTGCACACCTCTTCACACGGCCGCAAAGAACGGTCACCCAGCAGTG GCGAAACTTCTAATTGGAGCTGGCGCCGAGCTTGATCGCGGGAGCAATGG CGGCTCCACACCGCTTCACATGGCAGCAGATGCAGGACATTCAACGGTAG TCGAAGAATTACTCAGTGGAGGCGCGAATCCCGACCGTCGCTTGCCAAAT GGATCAACTCCGCTATATGACGCAGCCTTCGCTGGGCACGTCGACATCGT CAAAAAGCTTATTCGTGCAAATACCAACGCTGCGAACCTCGTGGTTCGCC CTACTGGAACTAAAGGCGTCGTCCCTCTCGACGTGGCGGCGCAAAATGGA CACGAGGAGACGGTACGCGAGCTGCTTAGGCTTGGAATAGGACTGTGTGG TGGTCCAACCCGCGGCAATGACGCCCTTCGCCTGGCTGCGTGGGTTCAAC ACATGGGCATTATGACCGCGCTGACGGACGCCGGTGTCGTTGACACGGGC ACCGCCTTGTTTAATGTAGCCGCTAAAGGCCTTGAAGCACCCGTGAAGTT TCTTCTGCAGCAGAAGTGGAATACGCCAGGAGGGGCGTACGTGAACACCC GCAGTAAAAATGCTAAGTTCACTCCGTTGTTCATTGCCATTGAAGGCGCA TCCCCAAGGGTCGTGCGAATGCTCCTGGACGCCGGGGCAGATGTGACTTC CACTTGCAGCTTGCCTGGCGGGATTTCCAGGTCGCCCCTCTCCCAATGCG AGAGCAACATCCGCAGCAAGTTTTGTCAAGGCCTACCCGCTACAGAGGAG CAACTGAACAGGCTGGAGGCCATCCGCCGCTCGTTGTTGCGAGTGGAGGC AATTTATGCGTTCTCTTGGCTTTGGTGCAGCAACATTCCCTGCATAGCGC CTGCTGCAGAGGAGGTGGTAGGAGCCTGTGAAAAGTCGAGGAGTCCAAGG AAGGCGAGGATGCTGATTTTATGGCGAAGGTCCGGAGCCCGCCGTGTGCT CATGCCGGCATCGTTGCGGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1603:4928..6348-

>mRNA_Ecto-sp13_S_contig1603.4414.1 ID=mRNA_Ecto-sp13_S_contig1603.4414.1|Name=mRNA_Ecto-sp13_S_contig1603.4414.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=804bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1603:4928..6348- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCCTGGATGGATCTGCACCAGGCTGCCGCTCAGGGTATGGTGAAGCG
CACTTCGACACTGCTCTCGAGGCCGTTGGCGAACGTAGACCAACGCGACA
ACGACGGCTTCACTCCCCTCATCGTTGCAGCCCAGGAGGGGCATCACAAT
GTTGTCAGGGTTCTCCTGGAGCACGGTGCCCAAATTTCGATGGCATCGTA
CGCTGGGTGCACCGCTCTTATCATGACAGCCATACACGGGCAACCAGCCG
TGGCGACCGCGCTACTTGATGCTGGTGCCGACGTCAACACGTCGGACATA
AACGGCTGCACCGCTCTATATTGCGCCGCCAACCACGGGCATCTCAGCGT
TGCCAAGATTCTCCTGGAAAATGGAGCCCAGCCTTCGCTGGGCACGTCGA
CATCGTCAAAAAGCTTATTCGTGCAAATACCAACGCTGCGAACCTCGTGG
TTCGCCCTACTGGAACTAAAGGCGTCGTCCCTCTCGACGTGGCGGCGCAA
AATGGACACGAGGAGACGGCGCATCCCCAAGGGTCGTGCGAATGCTCCTG
GACGCCGGGGCAGATGTGACTTCCACTTGCAGCTTGCCTGGCGGGATTTC
CAGGTCGCCCCTCTCCCAATGCGAGAGCAACATCCGCAGCAAGTTTTGTC
AAGGCCTACCCGCTACAGAGGAGCAACTGAACAGGCTGGAGGCCATCCGC
CGCTCGTTGTTGCGAGTGGAGGCAATTTATGCGTTCTCTTGGCTTTGGTG
CAGCAACATTCCCTGCATAGCGCCTGCTGCAGAGGAGGTGGTAGGAGCCT
GTGA
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