mRNA_Ecto-sp13_S_contig1603.4414.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1603.4414.1 vs. uniprot
Match: D7FXH6_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXH6_ECTSI) HSP 1 Score: 225 bits (573), Expect = 8.370e-67 Identity = 114/126 (90.48%), Postives = 117/126 (92.86%), Query Frame = 2
Query: 515 DGASPRVVRMLLDAGADVTSTCSLPGGISRSPLSQCESNIRSKFCQGLPATEEQLNRLEAIRRSLLRVEAIYAFSWLWCSNIPCIAPAAEEVVGACEKSRSPRKARMLILWRRSGARRVLMPASLR 892
+GASPRVVRMLLDAGADVTSTCSLPGGISRSPLSQCESNIRSKFCQ LPATEEQLN L+AIRR LLRVEAIYA SWLWCSNIPCIAPAA EV GAC KSR PRKARMLI WRR+GARRVLMPASLR
Sbjct: 348 EGASPRVVRMLLDAGADVTSTCSLPGGISRSPLSQCESNIRSKFCQALPATEEQLNGLQAIRRLLLRVEAIYASSWLWCSNIPCIAPAAREVEGACGKSRIPRKARMLISWRRTGARRVLMPASLR 473
BLAST of mRNA_Ecto-sp13_S_contig1603.4414.1 vs. uniprot
Match: D8LSC5_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSC5_ECTSI) HSP 1 Score: 97.4 bits (241), Expect = 2.160e-20 Identity = 61/128 (47.66%), Postives = 80/128 (62.50%), Query Frame = 2
Query: 524 SPRVVRMLLDAGADVTSTC---SLPGGI--SRSPLSQCESNIRSKFCQGLPATEEQLNRLEAIRRSLLRVEAIYAFSWLWCSNIPCIAPAAEEVVGACEKSRSPRKARMLILWRRSGARRVLMPASLR 892
+PR+VR+L+DAGAD TST +L GG+ + +PL+ S +R K G PATEEQL+RL+AIRR LLRV+A++A SWLW S+ P I A E G E R P + IL RR+ V + LR
Sbjct: 77 NPRIVRLLVDAGADTTSTVRVTNLNGGVEYNDTPLAVTTSLLREKVVDGKPATEEQLHRLQAIRRLLLRVDAVHAVSWLWPSDAPSIVHAVERSCGP-EPRRPPLSLTLPILKRRAKTCHVFVATLLR 203
BLAST of mRNA_Ecto-sp13_S_contig1603.4414.1 vs. uniprot
Match: D8LL76_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL76_ECTSI) HSP 1 Score: 82.0 bits (201), Expect = 6.480e-14 Identity = 50/127 (39.37%), Postives = 66/127 (51.97%), Query Frame = 2
Query: 524 SPRVVRMLLDAGADVTSTCSLPGGISRS----PLSQCESNIRSKFCQGLPATEEQLNRLEAIRRSLLRVEAIYAFSWLWCSNIPCIAPAAEEVVGACEKSRSPRKARMLILWRRSGARRVLMPASLR 892
SPRVVR+L+DAGAD T +P G RS PL + K AT +QL L A RR LL+VE ++A SWLW + C A ++ + P K+R+ I+WRRS R +P R
Sbjct: 297 SPRVVRLLVDAGADATLAVRVPDGFGRSTKYTPLDCATRCLAEKVVDEDFATAQQLRNLRASRRLLLQVEVVHATSWLWGGHAGCPAAPGKKRAQTESTNGKPLKSRLPIMWRRSARRGAALPGVFR 423
BLAST of mRNA_Ecto-sp13_S_contig1603.4414.1 vs. uniprot
Match: D7FT11_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT11_ECTSI) HSP 1 Score: 81.3 bits (199), Expect = 1.510e-13 Identity = 47/93 (50.54%), Postives = 61/93 (65.59%), Query Frame = 2
Query: 524 SPRVVRMLLDAGADVTS---TCSLPGGI--SRSPLSQCESNIRSKF-CQGLPATEEQLNRLEAIRRSLLRVEAIYAFSWLWCSNIPCIAPAAE 784
+PR+VRML+DAGAD TS +L GG+ + +PL+ + +R K G PAT+E L RLEAI R LLRV+A++A SWLW S P I A E
Sbjct: 397 APRIVRMLVDAGADTTSPVQVMNLKGGVVFNDTPLAFTKLRLRKKIVADGKPATKEHLQRLEAICRLLLRVDAVHAVSWLWPSGAPFIGRATE 489
BLAST of mRNA_Ecto-sp13_S_contig1603.4414.1 vs. uniprot
Match: A0A6H5L2D2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2D2_9PHAE) HSP 1 Score: 79.0 bits (193), Expect = 6.280e-13 Identity = 48/123 (39.02%), Postives = 65/123 (52.85%), Query Frame = 2
Query: 524 SPRVVRMLLDAGADVTSTCSLPGGISRS----PLSQCESNIRSKFCQGLPATEEQLNRLEAIRRSLLRVEAIYAFSWLWCSNIPCIAPAAEEVVGACEKSRSPRKARMLILWRRSGARRVLMP 880
SPRVVR+L+DAG D T +P G RS PL + + AT +QL L A RR LL+VEA++A SWLW + C A ++ + P K+R+ I+WRRS R +P
Sbjct: 259 SPRVVRLLVDAGPDATLAVRVPDGFGRSTKYTPLDCATRCLAERVVDEDYATAQQLRNLRASRRLLLQVEALHATSWLWGGHAGCPAALGKKRAQTELTNGKPLKSRLPIMWRRSARRGATLP 381
BLAST of mRNA_Ecto-sp13_S_contig1603.4414.1 vs. uniprot
Match: A0A6H5KJA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJA9_9PHAE) HSP 1 Score: 77.0 bits (188), Expect = 3.340e-12 Identity = 56/130 (43.08%), Postives = 77/130 (59.23%), Query Frame = 2
Query: 527 PRVVRMLLDAGADVTSTCSLP---GG--ISRSPLSQCESNIRSKFC---QGLPATEEQLNRLEAIRRSLLRVEAIYAFSWLWCSNIPCIAPAAEEVVGACEKSRSPRKARMLILWRRSGARRVLMPASLR 892
PRVVR+L++AGAD TS ++ GG +S +PL + +R K +G PA+ EQL++LEAIRR LLRVEA++A SWLW S+I I AA + ML+ RR+ R+V + A LR
Sbjct: 302 PRVVRLLVEAGADTTSPVAVRNQLGGDDVSITPLGLTMNPVRDKVKVVGRG-PASPEQLHKLEAIRRLLLRVEAVHAVSWLWPSDISTITRAAARGTDRTTAISTAVTLPMLVTRRRARGRKVPLAALLR 430
BLAST of mRNA_Ecto-sp13_S_contig1603.4414.1 vs. uniprot
Match: D7FVU0_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVU0_ECTSI) HSP 1 Score: 73.6 bits (179), Expect = 4.200e-11 Identity = 44/94 (46.81%), Postives = 60/94 (63.83%), Query Frame = 2
Query: 524 SPRVVRMLLDAGADVTSTC---SLPGGI--SRSPLSQCESNIRSKFCQ-GLPATEEQLNRLEAIRRSLLRVEAIYAFSWLWCSNIPCIAPAAEE 787
+PR+VR+L++AGAD TS + G + + +PL+ S + K G PATEE L RLEAIRR LLR EA++A SWLW S+ + AAE+
Sbjct: 285 TPRIVRLLINAGADTTSVIRGTNSEGEVQCNGTPLALTTSYLWEKILDNGEPATEEHLQRLEAIRRLLLRAEAVHAVSWLWPSDASFVGHAAEK 378
BLAST of mRNA_Ecto-sp13_S_contig1603.4414.1 vs. uniprot
Match: D7G1Y3_ECTSI (EsV-1-199 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1Y3_ECTSI) HSP 1 Score: 73.6 bits (179), Expect = 4.240e-11 Identity = 50/125 (40.00%), Postives = 69/125 (55.20%), Query Frame = 2
Query: 527 PRVVRMLLDAGADVTSTCSLPG-----GISRSPLSQCESNIRSKFCQGLPATEEQLNRLEAIRRSLLRVEAIYAFSWLWCSNIP-CIAPAAEEVVGACEKSRSPRKARMLILWRRSGARRVLMPA 883
PR+VR+L+D+GAD S G S +PL + +R +G EEQL RLEA+RR LLRVEA++A SW+W S+ +A A EV E + + + IL RR+ R VL+ A
Sbjct: 244 PRIVRLLVDSGADTESAVRYTYRDGLVGFSDTPLCRTIRILRDVETEGKDDKEEQLGRLEAVRRLLLRVEAVHATSWVWPSSAAGSVAQDAAEVKAGAETEPTRLTSTLQILRRRATRRGVLLRA 368
BLAST of mRNA_Ecto-sp13_S_contig1603.4414.1 vs. uniprot
Match: D7FXY7_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXY7_ECTSI) HSP 1 Score: 72.4 bits (176), Expect = 7.660e-11 Identity = 42/81 (51.85%), Postives = 53/81 (65.43%), Query Frame = 2
Query: 527 PRVVRMLLDAGADVTSTC---SLPGGISRSPLSQCESNIRSKFCQGLPATEEQLNRLEAIRRSLLRVEAIYAFSWLWCSNI 760
PRVVR+L++AGAD TST LPG + +P+ + + P TEEQLN LEAI R LLRVEA++A SWLW S+I
Sbjct: 202 PRVVRLLVEAGADTTSTVPIDGLPGTDNITPMGLTMLLLHDLGTE--PLTEEQLNALEAIHRLLLRVEALHAVSWLWSSDI 280
BLAST of mRNA_Ecto-sp13_S_contig1603.4414.1 vs. uniprot
Match: D8LPY4_ECTSI (EsV-1-199 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LPY4_ECTSI) HSP 1 Score: 71.2 bits (173), Expect = 2.840e-10 Identity = 33/66 (50.00%), Postives = 44/66 (66.67%), Query Frame = 1
Query: 1 MSWMDLHQAAAQGMVKRTSTLLSRPLANVDQRDNDGFTPLIVAAQEGHHNVVRVLLEHGAQISMAS 198
M + LH AA +G K T LL+ ++++R DGFTPL VAAQEGHH V R+LL H A +++AS
Sbjct: 1 MPYNHLHDAALKGSAKVTEALLATAALDINERTEDGFTPLDVAAQEGHHRVARILLRHNASVTVAS 66 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1603.4414.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 23
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1603.4414.1 >prot_Ecto-sp13_S_contig1603.4414.1 ID=prot_Ecto-sp13_S_contig1603.4414.1|Name=mRNA_Ecto-sp13_S_contig1603.4414.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=268bp MSWMDLHQAAAQGMVKRTSTLLSRPLANVDQRDNDGFTPLIVAAQEGHHNback to top mRNA from alignment at Ecto-sp13_S_contig1603:4928..6348- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1603.4414.1 ID=mRNA_Ecto-sp13_S_contig1603.4414.1|Name=mRNA_Ecto-sp13_S_contig1603.4414.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1421bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1603:4928..6348- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1603:4928..6348- >mRNA_Ecto-sp13_S_contig1603.4414.1 ID=mRNA_Ecto-sp13_S_contig1603.4414.1|Name=mRNA_Ecto-sp13_S_contig1603.4414.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=804bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1603:4928..6348- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |