mRNA_Ecto-sp13_S_contig16022.4411.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16022.4411.1
Unique NamemRNA_Ecto-sp13_S_contig16022.4411.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig16022.4411.1 vs. uniprot
Match: A0A6H5L131_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L131_9PHAE)

HSP 1 Score: 966 bits (2498), Expect = 0.000e+0
Identity = 516/617 (83.63%), Postives = 529/617 (85.74%), Query Frame = 1
Query:    1 MFLDEGVRFSLSEYDALSIIEWDVLVASDNSFEELYHAAFRVNEEFWVKGSNLEGTSFPSSAEASEMWQVLGHINGNAIYNNDDPAFVEYVEYTRARWGYEHPYDVALWMTISDFPYSRPLYQRYSSKFVVTNL----------------------------------------------------ISYVGDEHVTQDTVSDAVAGKTLFIHGGGVAEFKTASAPXXXXXXXXXXXXXXXXXXKLQKRRTLGNWRRGNDGDKTPKCTDGCEYTSKDGTRGRVCDANCSRRDVYGTLGCGTRDGAYGTECRACYNDGDMAHKQDTPENRAIMCSTVMPVDVRGLWLSMDNEDYSLQVGKAMEAEDGEE-VEGSFERVDVDGGTEGVISFFEEEAERPFFQDLKRGNLCAFVGGRVDEEAMWEVTVKSILQFMPGMRVAIAAGANGLDAYERSMGGRPGVTISSTQNPATASLFADRICGAGTTLILYVEPGSVLSRPFTSKDTHSPRGDLLVVHGGGHGSYRDDERSRRSGLVLGLEAPSFTRGTDLMLPVGANKDLRESLGMEMHANSVRRDGDGATVMALTEPADFEEVSAVPQVRDRMLAALAYARNTPGVWFGN 1692
            MFLDE VRFSLSEYDALSIIE DVLVASDNSFEELYHAAFRVNEEFWVKGSNLEGTSFPSSAEASEMWQVLGHINGNAIYNNDDPAFVEYVEYTRARWGYEHPYDVALWMTISDFPYSRPLYQRYSSKFVVTNL                                                    ISYVGDEHVTQDTVSDAVAGKTLFIHGG VA+  TASAPXXXXXXXXXXXXXXXXXX        GN RRGNDGD+T KCTDGC+YTS DGTRGRVCDANCSRRDV+GTLGCGT+DGAYGTECRACYNDGD AHKQDTP NRAIMCSTVMPVDVR LWLS+DNEDYSLQ+G+AME EDGEE VEGSFERV VDG  EGVISFFEE AERPFFQDLKRGNLCAFVGGRVDEEAMWEVTVKSILQFMPGMRVAIAAGA GLDAYERSMGGRPGVTISSTQNPATASLFADR CGAGT LILYVEPGSVLSRPFT KDTHSPRGDLLVVHGGG GSYR+DERSRRSGLVLGLEAPSFTRGTDLMLPVGANKDLRESLGMEM A+SVRRDGDGA V AL EP DFEEVS+VPQ R+RMLAALAYARNTPGVWFG+
Sbjct:   42 MFLDESVRFSLSEYDALSIIEPDVLVASDNSFEELYHAAFRVNEEFWVKGSNLEGTSFPSSAEASEMWQVLGHINGNAIYNNDDPAFVEYVEYTRARWGYEHPYDVALWMTISDFPYSRPLYQRYSSKFVVTNLVGNYSRYTTMIRPQPGEGMRPNPPPLYWVSNNNSPTVDFSMPAPLHVRYVFKISYVGDEHVTQDTVSDAVAGKTLFIHGGDVADVITASAPXXXXXXXXXXXXXXXXXXXXXXXXXRGNRRRGNDGDETLKCTDGCKYTSNDGTRGRVCDANCSRRDVHGTLGCGTKDGAYGTECRACYNDGDEAHKQDTPGNRAIMCSTVMPVDVRSLWLSIDNEDYSLQIGQAMEGEDGEEEVEGSFERVGVDGVREGVISFFEEAAERPFFQDLKRGNLCAFVGGRVDEEAMWEVTVKSILQFMPGMRVAIAAGAKGLDAYERSMGGRPGVTISSTQNPATASLFADRFCGAGTALILYVEPGSVLSRPFTFKDTHSPRGDLLVVHGGGQGSYRNDERSRRSGLVLGLEAPSFTRGTDLMLPVGANKDLRESLGMEMQADSVRRDGDGAAVTALAEPVDFEEVSSVPQARNRMLAALAYARNTPGVWFGD 658          
BLAST of mRNA_Ecto-sp13_S_contig16022.4411.1 vs. uniprot
Match: D7FI38_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI38_ECTSI)

HSP 1 Score: 963 bits (2489), Expect = 0.000e+0
Identity = 489/559 (87.48%), Postives = 503/559 (89.98%), Query Frame = 1
Query:   19 VRFSLSEYDALSIIEWDVLVASDNSFEELYHAAFRVNEEFWVKGSNLEGTSFPSSAEASEMWQVLGHINGNAIYNNDDPAFVEYVEYTRARWGYEHPYDVALWMTISDFPYSRPLYQRYSSKFVVTNLISYVGDEHVTQDTVSDAVAGKTLFIHGGGVAEFKTASAPXXXXXXXXXXXXXXXXXXKLQKRRTLGNWRRGNDGDKTPKCTDGCEYTSKDGTRGRVCDANCSRRDVYGTLGCGTRDGAYGTECRACYNDGDMAHKQDTPENRAIMCSTVMPVDVRGLWLSMDNEDYSLQVGKAMEAEDGEE-VEGSFERVDVDGGTEGVISFFEEEAERPFFQDLKRGNLCAFVGGRVDEEAMWEVTVKSILQFMPGMRVAIAAGANGLDAYERSMGGRPGVTISSTQNPATASLFADRICGAGTTLILYVEPGSVLSRPFTSKDTHSPRGDLLVVHGGGHGSYRDDERSRRSGLVLGLEAPSFTRGTDLMLPVGANKDLRESLGMEMHANSVRRDGDGATVMALTEPADFEEVSAVPQVRDRMLAALAYARNTPGVWFGN 1692
            +R SLSEYDALSIIE  VLVASDNSFEELYHAAFRVNEEFWVKGSNLEGTSFPSSAEAS MWQVLGHINGNAIYNNDDPAFVEYVEYTRA WGYEHPYDVAL MTISDFPYS PLYQRYSSKFVVTNLISYVGDEHVTQDTVSDAVAGKTLF+HGGGVA+ KTASAP                  KLQKR+T  NWRRG+ GD+TPKC DGCEYTSKDGTRGRVCDANCSRRDVYGTLGCGT+DGAYGTECRACYNDG  AHKQDTPENR IMCST MPVDVR LWLS D+ED+SLQ+  AMEAED EE  EGSFERVDVDG  EGVISFFEEEAERPFFQDLKRGNLCAFV GRVDEEAMWEVTVKSILQFMPGMRVAIAAGA GLDAYERSMGG PGVTISST NPATASLFADR CGAGT LILYVE GSVLSRPFTSKDTHSPRGDLLVVH GG GSYRDDERSRRSGLVLGLEAPSFTRGTDL+LPVGANKDLR SLGMEMHA+SVRRDG GA VMALTEPADFEEVSAVPQ R+RMLAALAYARNTPGVWFG+
Sbjct:   43 LRKSLSEYDALSIIEPVVLVASDNSFEELYHAAFRVNEEFWVKGSNLEGTSFPSSAEASGMWQVLGHINGNAIYNNDDPAFVEYVEYTRAHWGYEHPYDVALGMTISDFPYSWPLYQRYSSKFVVTNLISYVGDEHVTQDTVSDAVAGKTLFVHGGGVADVKTASAPPAPVAVQETARRSQRRR-KLQKRKTRENWRRGHAGDETPKCLDGCEYTSKDGTRGRVCDANCSRRDVYGTLGCGTKDGAYGTECRACYNDGGKAHKQDTPENRVIMCSTAMPVDVRDLWLSTDSEDHSLQIAHAMEAEDREEEAEGSFERVDVDGIREGVISFFEEEAERPFFQDLKRGNLCAFVSGRVDEEAMWEVTVKSILQFMPGMRVAIAAGAKGLDAYERSMGGLPGVTISSTHNPATASLFADRFCGAGTALILYVELGSVLSRPFTSKDTHSPRGDLLVVHRGGQGSYRDDERSRRSGLVLGLEAPSFTRGTDLVLPVGANKDLRGSLGMEMHADSVRRDGVGAAVMALTEPADFEEVSAVPQARNRMLAALAYARNTPGVWFGD 600          
BLAST of mRNA_Ecto-sp13_S_contig16022.4411.1 vs. uniprot
Match: A0A6H5L4M7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4M7_9PHAE)

HSP 1 Score: 635 bits (1637), Expect = 4.170e-218
Identity = 382/767 (49.80%), Postives = 428/767 (55.80%), Query Frame = 1
Query:    1 MFLDEGVRFSLSEYDALSIIEWDVLVASDNSFEELYHAAFRVNEEFWVKGSNLEGTSFPSSAEASEMWQVLGHINGNAIYNNDDPAFVEYVEYTRARWGYEHPYDVALWMTISDFPYSRPLYQRYSSKFVVTNLISYVG------------------------------------------------------------------------------------------------------------------------------------------DEHVTQDT--------------------------VSDAVAGKTLFIHGGGVAEFKTASAPXXXXXXXXXXXXXXXXXXKLQKRRTLGNWRRGND----------------------------------------GDKTPKCTDGCEYTSKDGTRGRVCDANCSRRDVYGTLGCGTRDGAYGTECRACYNDGDMAHKQDTPENRAIMCSTVMPVDVRGLWLSMDNEDYSLQVGKAMEAED-GEEVEGSFERVDVDGGTEGVISFFEEEAERPFFQDLKRGNLCAFVGGRVDEEAMWEVTVKSILQFMPGMRVAIAAGANGLDAYERSMGGRPGVTISSTQNPATASLFADRICGAGTTLILYVEPGSVLSRPFTSKDTHSPRGDLLVVHGGGHGSYRDDERSRRSGLVLGLEAPSFTRGTDLMLPVGANKDLRESLGMEMHANSVRRDGDGATVMALTEPADFEEVSAVPQVRDRMLAALAYARNTPGVWF 1686
            MFLDE VR SLSEYDALSIIEWDVLVASDNSFEELYHAAFRVNEEFWVKGSNLEGTSF S+AEASEMWQVLGHINGNAIYNNDDPAFVEYVEYTRARWGYEHPYDVALWMTISDFPYS PLYQRYSSKFVVTNL+  V                                                                                                                                           D+ + QD+                          +S A  G+   +     A  + AS+P                   + + +    WR  ND                                            P C+  C YTSKDGT+GRVCD+NCS  +VYGT GCG + G YG +CR CYN+ D A KQD+P+NRAIMCST+MPVDV G  LS  +E   L+V K +EAE+ G+E     +RV         I FFEE AERPFFQDLKR NLCAFVGGRV EEAMWEVTVKSILQFMPGMRVAIAA + GLDAYERS+GG PG  ISSTQN ATA+LFAD+ CGAGT LILYVEPGSVLSRPFTSKDTHSPRGDLLVVH G  GSY D +   RS  VLG +APSFT GTDLMLP+G N+ LRESLG  + A S++ DGDGA+++AL E   F+ VSA+PQV    LAALAY+R TPGVWF
Sbjct:    5 MFLDEDVRSSLSEYDALSIIEWDVLVASDNSFEELYHAAFRVNEEFWVKGSNLEGTSFHSTAEASEMWQVLGHINGNAIYNNDDPAFVEYVEYTRARWGYEHPYDVALWMTISDFPYSWPLYQRYSSKFVVTNLVGNVASFRATAAAAVALKKPEPAQQSSRKLTSVPKWKKAEKWRNGNDDGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCNAKQGIYGADCRVCYNSVDKALKQDSPDNRAIMYDAVVVCSTVMPVDVYHRRMSAADEGEASRVARRLAALKEDASSPAEEVELAVKVDQDRKLT-SVPRWKAKEKWRTANDDGIXXXXXXXXXXXXKXXGGEXXXXXXXXXXXXNGSSDDSSSSDPGCSSRCTYTSKDGTKGRVCDSNCSTPNVYGTKGCGAKQGIYGADCRVCYNNVDRALKQDSPDNRAIMCSTMMPVDVYGRRLSASDEGDPLRVAKMIEAEEVGDEWSVDVDRVKA-------IRFFEEAAERPFFQDLKRHNLCAFVGGRVGEEAMWEVTVKSILQFMPGMRVAIAAESEGLDAYERSLGGLPGAAISSTQNSATAALFADQYCGAGTALILYVEPGSVLSRPFTSKDTHSPRGDLLVVHTGSPGSYHDSQLRSRSASVLGFDAPSFTHGTDLMLPMGTNQALRESLGFRLGA-SLQHDGDGASLIALEELVGFDRVSALPQV----LAALAYSRETPGVWF 758          
BLAST of mRNA_Ecto-sp13_S_contig16022.4411.1 vs. uniprot
Match: A0A6H5LJP6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJP6_9PHAE)

HSP 1 Score: 592 bits (1527), Expect = 7.740e-198
Identity = 395/934 (42.29%), Postives = 437/934 (46.79%), Query Frame = 1
Query:    1 MFLDEGVRFSLSEYDALSIIEWDVLVASDNSFEELYHAAFRVNEEFWVKGSNLEGTSFPSSAEASEMWQVLGHINGNAIYNNDDPAFVEYVEYTRARWGYEHPYDVALWMTISDFPYSRPLYQRYSSKFVVTNLISYVGDEHVTQDTVSDAVAGKTLFIHGGGVAEFKTASAPXXXXXXXXXXXXXXXXXXK-LQKRRTLGNWR-------------------------------------------------------RG---------------------------------NDGDKTPK----------------------------------------------------------------------------------------------------------------CTDGCEYTSKDGTRGRVCDANCSRRDVYGTLGCGTRDGAYGTECRACYNDGDMAHKQDTPENRAIMCSTVMPVDV-----------------RGL-----------------------W--------------------------------------------------------------------------------------------------------------------------------LSMDNEDYSLQVGKAMEAEDGEEV--EGSFE-RVDVDGGTEGVISFFEEEAERPFFQDLKRGNLCAFVGGRVDEEAMWEVTVKSILQFMPGMRVAIAAGANGLDAYERSMGGRPGVTISSTQNPATASLFADRICGAGTTLILYVEPGSVLSRPFTSKDTHSPRGDLLVVHGGGHGSYRDDERSRRSGLVLGLEAPSFTRGTDLMLPVGANKDLRESLGMEMHANSVRRDGDGATVMALTEPADFEEVSAVPQVRDRMLAALAYARNTPGVWF 1686
            MFLDE VR SLSEYDALSIIEWDVLVASDNSFEELYHAAFRVNEEFWVKGSNLEGTSF S+A+A EMWQ+LGHINGNAIYNNDDPAFVEYVEYTRARWGYEHPYDVALWMTISDFPYS PLYQRYSSKFVVTNLIS VG EHV  DTVSDA+AG TLFIHG  V E   AS                    + + K +    W+                                                       RG                                 ND +K  K                                                                                                                C DGCEYTSKDGTRGRVCD+NCSR D YGTLGCG + G YG +CRACYND + A KQDTP NRAIMCST MPVDV                 RGL                       W                                                                                                                                LS   ED   Q+ + MEAED E+   EGS+E RV+V+ G E  I FFE  AERP+  ++ RG+LCAFV G V EEAMWEVTVKSILQFMPGM+VAIAA + GLDAYERSMG  PGVT+S TQNPATA+LFAD+ C     LILYV PGSVLSR FT KDTHSPRGDLLVVH G  GSY D E S RS  VLG E PSFT+GTDLMLP  AN  +RE+LG+++ +  ++ D DG  V+AL E   F++VSAVPQV    LAA+AY+R TPGVWF
Sbjct:  120 MFLDEDVRSSLSEYDALSIIEWDVLVASDNSFEELYHAAFRVNEEFWVKGSNLEGTSFHSNADAIEMWQLLGHINGNAIYNNDDPAFVEYVEYTRARWGYEHPYDVALWMTISDFPYSWPLYQRYSSKFVVTNLISSVGYEHVNHDTVSDAIAGNTLFIHGSSVDEGNVASYEATEGDASVDVTATQRHLTEDVPKWKEQEKWKTSXXXXXXXXXXXXXETDDGVXXXXXXXXXXXXXXXSPDEEGCMNGCEYTSKDGTRGRVCDSNCSRSDAYGTLGCGAKSGKYGADCRACYNDVEKARKQDTPANRAIMCSTKMPVDVYDRRLTAVESDPLLVARDLEVLQKDASSPSVEEHRQLTEDVPKWKEQEKWKXXXXXXXXXXXXXXXETDDGVXXXXXXXXXXXXXXXSSDEEGCLDGCEYTSKDGTRGRVCDSNCSRSDAYGTLGCGAKSGKYGADCRACYNDVEKARKQDTPANRAIMCSTKMPVDVYGRRLTPVDESDPLLVARGLEALQEDASSPPQEHRRLTEDVPKWKXXXXXXXXXXXXXXXXXXXXXETDDGVXXXXXXXXXXXXXXXSPDEEGCLDGCDYTSKDGTRGRVCDSNCSRSDAYGTLGCGAKSGKYGADCRACYNDVEKARTQDTPANRAIMCSTREPVDVYGRRLSAHPEDRFPQLAQQMEAEDSEDENSEGSYEPRVEVEVGREKAIRFFEAAAERPYLGEINRGDLCAFVSGGVGEEAMWEVTVKSILQFMPGMKVAIAAESEGLDAYERSMGRLPGVTVSGTQNPATAALFADKYCSFSE-LILYVRPGSVLSRSFTPKDTHSPRGDLLVVHAGSQGSYHDTELSHRSSSVLGFETPSFTQGTDLMLPGDANYYVREALGLKIGSEGLQEDRDGDAVIALQEFVYFDQVSAVPQV----LAAVAYSRKTPGVWF 1048          
BLAST of mRNA_Ecto-sp13_S_contig16022.4411.1 vs. uniprot
Match: A0A6H5JHL7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHL7_9PHAE)

HSP 1 Score: 579 bits (1493), Expect = 9.820e-197
Identity = 371/795 (46.67%), Postives = 404/795 (50.82%), Query Frame = 1
Query:    1 MFLDEGVRFSLSEYDALSIIEWDVLVASDNSFEELYHAAFRVNEEFWVKGSNLEGTSFPSSAEASEMWQVLGHINGNAIYNNDDPAFVEYVEYTRARWGYEHPYDVALWMTISDFPYSRPLYQRYSSKFVVTNLISYVGDEHVTQDTVSDAVAGKTLFIH--------GGGVAEFKT----------------------------------------------ASAPXXXXXXXXXXXXXXXXXXKLQ----------KRRTLGNWRRG--NDGDKTPK----------CTDGCEYTSKDGTRGRVCDANCSRRDVYGTL------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGTRDGAYGTECRACYNDGDMAHKQDTPENRAIMCSTVMPVDVRGLWLSMDNEDYSLQVGKAMEAEDGEE----VEGSFERVDVDGGTEGVISFFEEEAERPFFQDLKRGNLCAFVGGRVDEEAMWEVTVKSILQFMPGMRVAIAAGANGLDAYERSMGGRPGVTISSTQNPATASLFADRICGAGTTLILYVEPGSVLSRPFTSKDTHSPRGDLLVVHGGGHGSYRDDERSRRSGLVLGLEAPSFTRGTDLMLPVGANKDLRESLGMEMHANSVRRDGDGATVMALTEPADFE 1605
            MFLDE VR SLSEYDALS +EWDVLVASDNSFEELYHAA RVNEEFWVKGS LEGTSF SSAEASEMWQVLGHINGNAIYNNDDPAFVEYVEYTRARWGYEHPYDVALWMTISDFPYS PLYQRYSSKF+VTNL   VGD +V     + + A  T  +          G   ++KT                                               S+                                K+ T G  RR   ND DK  K          C+  CEYTS+DGTRGRVCDANCS  DVYGT                                                                                                                                                                                     GC  + G YG E RAC+ND D A KQDTPENRAIMCSTVMPVDV G  L+ D+    L+  K    ED EE    VEG    VDVD   E VISFFEE A+RP+ QDLKR NLCAFV GRV EE MWEVTVK ILQFMPGMRVAIAA A GLD YERSMGGRPGVT+S TQN ATASLFAD+ CGAG  LILYV+PGS LSR FTSKDTHSPRGDLLVVH G  GSY D +  RRS  VLG +APSFT GTDLMLPVGAN+DLRESLG+  H  S++ DGDGA+++AL E  +F+
Sbjct:   13 MFLDENVRSSLSEYDALSTVEWDVLVASDNSFEELYHAALRVNEEFWVKGSKLEGTSFHSSAEASEMWQVLGHINGNAIYNNDDPAFVEYVEYTRARWGYEHPYDVALWMTISDFPYSWPLYQRYSSKFIVTNL---VGDGNVASKAAAASTATATADVAKQTRGRKLSGNTPKWKTQEKWRTSKDDSLXXXXXXXXXXXXXXXXXXXXXXXXXWKNKFSDGACSSSCEYTSRDGTRGRVCDANCSTPDVYGTRECNAKQGTYGEERRACFNDVDKARKQDTPENRAIMCSSSCEYTSRDGTRGRVCDANCSTPDVYGTRECNAKQGTYGEERRACFNDVDKAREQDTPENRAIMCSTKRPVEGYGRRLTPDDESDPLRIARSLETLQEDTSSPLQEQEHRQLSGSTPKRRSQEKWRTRKDDSIPKCVFRSGGSASRWKXXXXXXXXXXDKAPKXXXXXXXXXXXXXXXXXXXXXYTSXXXXXXXXXXXXXXXXXXXXXRGCNAKQGTYGEERRACFNDVDKARKQDTPENRAIMCSTVMPVDVYGRRLTPDDGSRPLREAKIFSVEDSEEEADGVEGELANVDVD--REDVISFFEEAAKRPYSQDLKRRNLCAFVSGRVGEETMWEVTVKIILQFMPGMRVAIAAEAEGLDTYERSMGGRPGVTVSGTQNLATASLFADQYCGAGAALILYVKPGSDLSRFFTSKDTHSPRGDLLVVHTGFQGSYHDAQLRRRSVSVLGFDAPSFTDGTDLMLPVGANEDLRESLGLR-HGASLQHDGDGASMVALQEMVEFD 801          
BLAST of mRNA_Ecto-sp13_S_contig16022.4411.1 vs. uniprot
Match: D7FI63_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI63_ECTSI)

HSP 1 Score: 516 bits (1328), Expect = 6.600e-165
Identity = 417/1278 (32.63%), Postives = 452/1278 (35.37%), Query Frame = 1
Query:    1 MFLDEGVRFSLSEYDALSIIEWDVLVASDNSFEELYHAAFRVNEEFWVKGSNLEGTSFPSSAEASEMWQVLGHINGNAIYNNDDPAFVEYVEYTRARWGYEHPYDVALWMTISDFPYSRPLYQRYSSKFVVTNLISYVGDEHVTQDTVSDAVAGKTLFIHG-----GGVAEFKTASAPXXXXXXXXXXXXXXXXXXKLQKRRTLGNWR--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RG----------------NDGDK----------------------------------------------------------------TPK-------------------------------------------------CTDGCEYTSKDGTRGRVCDANCSRRDVYGTLGCGTRDGAYGTECRACYNDGDMAHKQDTPENRAIMCSTVMPVDVRGLWLSMDNEDYSLQVGKAMEAEDGEE----VEGSFERVDVDGGTEGVISFFEEEAERPFFQDLKRGNLCAFVGGRVDEEAMWEVTVKSILQFMPGMRVAIAAGANGLDAYERSMGGRPGVTISSTQNPATASLFADRICGAGTTLILYVEPGSVLSRPFTSKDTHSPRGDLLVVHGGGHGSYRDDERSRRSGLVLGLEAPSFTRGTDLMLPVGANKDLRESLGMEMHANSVRRDGDGATVMALTEPADFEEVSAVPQVRDRMLAALAYARNTPGVWF 1686
            MFLDE VR SLSEYDALSI+EWDVLVASDNSFEELYHAAFRVNEEFWVKGSNLEGTSF SSAEASEMWQVLGHINGNAIYNNDDPAFVEYVEYTRARWGYEHPYDVALWMTISDFPYS PLYQRYSSKFVVTNLISYVG EHV+ DTVSDAVAGKTLFIHG     G VA ++  ++                      K +T   WR                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  RG                ND DK                                                                TPK                                                 C+  CEYTS+DGTRGRVCDANCS  DVYGT GC  + G YG ECRAC+ND D A KQDTPENR+IMCSTVMPVDV G  L+ D+    L+V K    ED EE    VE     VDVD   E VISFFEE AERP+ QDLKR NLCAFVGGR  EEAMW+VTVKSILQF+PGMRVAIAA A GLDAYERSMGG PGVT+S TQNPATA+LFAD+ CG GT LILYVEPGSVLSRPFTSKDTHSPRGDLLVVH G  GSY D +  RRS  VLG +APSFT GTDLMLPVGAN+DLRESLG+  H  S++ DGD A+++AL E  +F++ SAVPQV    LAALAY+R+TPGVWF
Sbjct:  121 MFLDENVRSSLSEYDALSIVEWDVLVASDNSFEELYHAAFRVNEEFWVKGSNLEGTSFHSSAEASEMWQVLGHINGNAIYNNDDPAFVEYVEYTRARWGYEHPYDVALWMTISDFPYSWPLYQRYSSKFVVTNLISYVGYEHVSHDTVSDAVAGKTLFIHGSSVEDGNVASYEAVASTATATVDVAKQTRGRKLTGSTPKWKTQEKWRSSKDDSIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGACSSTCEYTSRDGTRGRVCDANCSTPDVYGTRGCNAKQGTYGEECRACFNDVDKARKQDTPENRSIMCSTKRPVEGYGRRLTADDESDPLRVARDLETLQEDASSPSGEEEHRQLSGSTPKWKSQEKWRTSKDDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGACSSSCEYTSRDGTRGRVCDANCSTPDVYGTRGCNAKQGTYGEECRACFNDVDKARKQDTPENRSIICSNKRPVEGYGRRLTADDESDPLRVAHSLETLQEDASSPSGEEEHRQLSGSTPKWKSQEKWRTSKDDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACSSSCEYTSRDGTRGRXXXXXXXXPDVYGTRGCNAKQGTYGEECRACFNDVDKARKQDTPENRSIMCSNKRPVEGYGRRLTANDESDPLRVARSLETLQEDASSPLEEEEHRQLSGSTPKWKSQEKWRTSKDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGACSSSCEYTSRDGTRGRVCDANCSTPDVYGTRGCNAKQGTYGEECRACFNDVDKARKQDTPENRSIMCSTKRPVEGYGRRLTADDESDPLRVGRSLETLQEDASSPSGEEEHRQLSGSTPKWKSQEKWRTSKDDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGACSSTCEYTSRDGTRGRVCDANCSTPDVYGTRGCNAKQGTYGEECRACFNDVDKARKQDTPENRSIMCSTVMPVDVYGRRLTPDDGSRPLRVAKIFSVEDSEEEADDVEEELANVDVD--REDVISFFEEAAERPYSQDLKRRNLCAFVGGRAGEEAMWDVTVKSILQFVPGMRVAIAAEAEGLDAYERSMGGLPGVTVSGTQNPATAALFADQYCGPGTALILYVEPGSVLSRPFTSKDTHSPRGDLLVVHTGSQGSYHDAQLRRRSASVLGFDAPSFTHGTDLMLPVGANEDLRESLGLR-HGASLQHDGDWASMVALQELVEFDQFSAVPQV----LAALAYSRDTPGVWF 1391          
BLAST of mRNA_Ecto-sp13_S_contig16022.4411.1 vs. uniprot
Match: D8LLE5_ECTSI (Imm upregulated 5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLE5_ECTSI)

HSP 1 Score: 446 bits (1146), Expect = 5.370e-146
Identity = 285/649 (43.91%), Postives = 353/649 (54.39%), Query Frame = 1
Query:    1 MFLDEGVRFSLSEYDALSIIEWDVLVASDNSFEELYHAAFRVNEEFWVKGSNLEGTSFPSSAEASEMWQVLGHINGNAIYNNDDPAFVEYVEYTRARWGYEHPYDVALWMTISDFPYSRPLYQRYSSKFVVTNLISYVGDEHVTQDTVSDAVAGKTLFIHGGGVAEFKTASAPXXXXXXXXXXXXXXXXXXKLQKRRTLGNWRRGNDGDKTPKCTDGCEYTSKDGTRGRVCDA----NCSRRDVYGTLGC-GTRDGAYGTECRAC--YNDGDMAHKQDTPENRAIMCSTVMPVDVRGLWLSMDNED-YSLQVGKAMEAEDGEEVEGSFERVDVDGGTEGV----------------------------------------------------------------------------ISFFEEEAERPFFQDLKRGNLCAFVGGRVDEEAMWEVTVKSILQFMPGMRVAIAAGANGLDAYERSMGGRPGVTISSTQNPATASLFADRICG-AGTTLILYVEPGSVLSRPFTSKDTHSPRGDLLVVHGGGHGSYRDDERSRRSGLVLGLEAPSFTRGTDLMLPVGANKDLRESLGMEMHANSVRRDGDGATVMALTEPADFEEVSAVPQVRDRMLAALAYARNTPGVWFGN 1692
            +FLDE +R + SEYDAL+IIEWDVLVA+D SFEELYHAAFRVNEEFWVKGSNLEGT+F SS+  S+MW VLGHINGNAIYNN+D AFVEYV+YTRARW   +PYDVALW+TISDFPYS PLYQR+S+KFV TNLI+YVG  HV   TV+DA+AG+TLFIHG  V E    S                         R L NW+   + +K     +    TS+  T   V  A         DVY       T+DG+     R    + D +    ++  E      +  +P   R L    D+ED Y  +  +    +DG   EG  +  +V+G  +GV                                                                              FFE E+ RPF +D++R  +CAFV G   +    EVTV S+L+F+PGMRV +AA  + +DAYER++GG PGV++SSTQ+  TAS FAD  CG A TTLI Y++ GSV+SR FTSKDTHSP+GDLLVV G GH     D    R+  VLG EAP FT GTDL+LPVGAN DLR +L  E   N          V A+ +  D  + +AVPQ    MLAAL Y R  PG+WF N
Sbjct:    5 LFLDERIRSNFSEYDALAIIEWDVLVATDRSFEELYHAAFRVNEEFWVKGSNLEGTNFHSSSMMSDMWHVLGHINGNAIYNNNDQAFVEYVDYTRARWEDNYPYDVALWLTISDFPYSWPLYQRFSNKFVTTNLIAYVGKAHVDHGTVTDAIAGQTLFIHGKNVDEGSNLSVEKVNEANGTGKNGGASKVV-----RKLQNWK---ENEKWKTFEEPKWETSETRTNENVPKAARKLQADSEDVYDRRRLTATQDGSAPKVARKLQKWRDANKESGKNKWETTETAKNESVPKAARRL--QADSEDVYDRR--RLTATQDGSAPEGGSQAAEVEGRQQGVGEEQDGSAPKVARKLQKWRDANKESGKNKWETTETAKDESVPKVSRELQADSEDVYTRRRLVETPTFAASADRVEVSRFFEMESVRPFAEDVERNRVCAFVAGTASQVDQIEVTVSSVLEFVPGMRVVVAAEVDAVDAYERAVGGLPGVSVSSTQSVFTASFFADEYCGVANTTLIYYLKTGSVVSRSFTSKDTHSPQGDLLVVFGKGHSGDLAD----RTANVLGFEAPPFTTGTDLILPVGANADLRAALASEKTVNDA--------VGAIEDVFDLGDTAAVPQ----MLAALQYKRAAPGIWFFN 625          
BLAST of mRNA_Ecto-sp13_S_contig16022.4411.1 vs. uniprot
Match: D7FI39_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI39_ECTSI)

HSP 1 Score: 462 bits (1189), Expect = 2.390e-144
Identity = 407/1337 (30.44%), Postives = 444/1337 (33.21%), Query Frame = 1
Query:    1 MFLDEGVRFSLSEYDALSIIEWDVLVASDNSFEELYHAAFRVNEEFWVKGSNLEGTSFPSSAEASEMWQVLGHINGNAIYNNDDPAFVEYVEYTRARWGYEHPYDVALWMTISDFPYSRPLYQRYSSKFVVTNLISYVGDEHVTQDTVSDAVAGKTLFIHG-----GGVAEFKTASAPXXXXXXXXXXXXXXXXXXKLQKRRTLGNWRRGNDGDKT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PKCTDGCEYTSKDGTRGRVCDANCS-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RR----------------------------------------------------------------------------------------------------------------------------------DVYGTLGCGTRDGAYGTECRACYNDGDMAHKQDTPENRAIMCSTVMPVDVRGLWLSMDNEDYSLQVGKAMEAED-GEEVEGSFERVDVDGGTEGVISFFEEEAERPFFQDLKRGNLCAFVGGRVDEEAMWEVTVKSILQFMPGMRVAIAAGANGLDAYERSMGGRPGVTISSTQNPATASLFADRICGAGTTLILYVEPGSVLSRPFTSKDTHSPRGDLLVVHGGGHGSYRDDERSRRSGLVLGLEAPSFTRGTDLMLPVGANKDLRESLGMEMHANSVRRDGDGATVMALTEPADFEEVSAVPQVRDRMLAALAYARNTPGVWF 1686
            MFLDE VR SLSEYDALSIIEWDVLVASDNSFEELYHAAFRVNEEFWVKGSNLEGTSF S+AEASEMWQVLGHINGNAIYNNDDPAFVEYVEYTR+RWGYEHPYDVALWMTISDFPYS PLYQRYSSKFVVTNLIS VG EHV  D VSDAVAG+TLFIHG     G VA F+ A+A                    + K +T   WR  N GD T                                                                                                                                                                                                                                P C+  C YTSKDGT+GRVCD+NCS                                                                                                                                                                                                                                                                                                                                                                                                                               RR                                                                                                                                  +VYGT GCG + G YG +CR CYN+ D A KQD+P+NRAIMCSTVMPVDV G  LS  +E   L+V K +EAED GEE+      VDVD   E  I FFEE AER + QDLKR NLCAFVGGR  EEAMWEVTV SILQFMPG+RVAIAA A GLDAYERSMGG PGVTISSTQNPATA+LFAD+ CG GT LILYVEPGSVLSRPFTSKDTHSPR DLLVV+ G  GSY D +   RS  VLG +APSFT GTDLMLPVG N+ LRESLG+  H  S++ DGDGA+++AL E   F++VSAVPQV    LAALAY+R TPGVWF
Sbjct:  124 MFLDESVRSSLSEYDALSIIEWDVLVASDNSFEELYHAAFRVNEEFWVKGSNLEGTSFHSTAEASEMWQVLGHINGNAIYNNDDPAFVEYVEYTRSRWGYEHPYDVALWMTISDFPYSWPLYQRYSSKFVVTNLISSVGFEHVGHDMVSDAVAGQTLFIHGSSVEEGNVASFRAAAAAAVAVEEPQPAQQRSRKLTSVPKWKTAEKWRNSN-GDGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCNAKQGIYGADCRVCYNNVDRALKQDSPDNRAIMCSTVKPVDVYRRRMSAADESEPSRVARSLEALNEEASSPSEEVQSAVKVNQDRKLTSVPKWKANEKWRTANDDGXXXXXXXXXXXXNKXXXSEXXXXXXXXXXXRNDSSDDSSSSDPGCSSRCTYTSKDGTKGRVCDSNCSSPNVYGTKGCNAKQGIYGADCRVCYNNVDRALKQDSPDNRAIMCSTVKPVDVYRRRMSAVDESEASRVARSLEVLKEEASSPSEEVESAVKVTRDRKLTSVPKWKANEKWRTANDDGXXXXXXXXXXXXXXXXGSEXXXXXXXXXXXXXXSSDDDSSSDAGCSSRCTYTSKDGTKGRVXXXXXXXXXXXXXXGCNAKQGIYGADCRVCYNDLDRALKQDSPDNRAIMCSTVMPVDAYGRRMSAAEEGLPSFVARSLEALKEDASSLSWKASLDRKLTSVPKWKAEEKWRTANDDGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGAKQGIYGADCRVCYNNVDRALKQDSPDNRAIMCSTVKPVDVYRRRMSAADESEASRVARSLEALKEEASSPSEEVESAVKVNQYRKLTSVPKWKANEKWRTANDDGXXXXXXXXXXXXXXXXGSEXXXXXXXXXXXXNDSSDDSSSSDAACSSRCTYTSKDGTKGRVCXXXXXXXNVYGTKGCGAKQGIYGADCRVCYNNVDRALKQDSPDNRAIMCSTVMPVDVYGRRLSASDESDPLRVAKMIEAEDVGEELS-----VDVD--REQAIRFFEEAAERSYSQDLKRHNLCAFVGGRAGEEAMWEVTVNSILQFMPGIRVAIAAEAEGLDAYERSMGGLPGVTISSTQNPATAALFADQYCGPGTALILYVEPGSVLSRPFTSKDTHSPRSDLLVVYTGSQGSYHDAQLRSRSASVLGFDAPSFTHGTDLMLPVGTNEALRESLGLR-HGASLQHDGDGASLIALQELVGFDQVSAVPQV----LAALAYSRETPGVWF 1447          
BLAST of mRNA_Ecto-sp13_S_contig16022.4411.1 vs. uniprot
Match: D7FI37_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI37_ECTSI)

HSP 1 Score: 441 bits (1133), Expect = 6.320e-135
Identity = 232/353 (65.72%), Postives = 274/353 (77.62%), Query Frame = 1
Query:  640 CTDGCEYTSKDGTRGRVCDANCSRRDVYGTLGCGTRDGAYGTECRACYNDGDMAHKQDTPENRAIMCSTVMPVDVRGLWLSMDNEDYSLQVGKAMEAEDGEEV--EGSFE-RVDVD-GGTEGVISFFEEEAERPFFQDLKRGNLCAFVGGRVDEEAMWEVTVKSILQFMPGMRVAIAAGANGLDAYERSMGGRPGVTISSTQNPATASLFADRICGAGTTLILYVEPGSVLSRPFTSKDTHSPRGDLLVVHGGGHGSYRDDERSRRSGLVLGLEAPSFTRGTDLMLPVGANKDLRESLGMEMHANSVRRDGDGATVMALTEPADFEEVSAVPQVRDRMLAALAYARNTPGVWF 1686
            C DGCEYTSKDGTRGRVCD+NCS  +VYGTLGCG ++G YG +CRACYND + A KQDTP NRAIMCST  PVDV G  LS  ++D+SL++ +  EAE+ E+   E  FE RVDV+ GG E  + FFE  AER +  +++RGNLCAFV G   EEAMWEVTVKSILQFMPGM+VA+AA A GLDAYERSMG  PGVT+S TQNPATA+L+AD+ C     LILYV+PGSVLSR FTSKDTHSPRGDLLVVH G  GSY D E SRRS  VLG EAPSFT+GTDLMLP  AN  LRE+LG+++ ++ ++ DGDG  V+AL +  DF++VSAVPQV    LAA+AY+R TPGVWF
Sbjct: 1392 CMDGCEYTSKDGTRGRVCDSNCSSPNVYGTLGCGAKNGKYGADCRACYNDDEKARKQDTPGNRAIMCSTREPVDVYGRRLS-GHQDFSLELARLTEAENSEDEDSEDGFEPRVDVEVGGREKAVRFFEAAAERTYLGEVERGNLCAFVSGWAGEEAMWEVTVKSILQFMPGMKVAVAAEAEGLDAYERSMGRLPGVTVSGTQNPATATLYADKYCSFSE-LILYVKPGSVLSRSFTSKDTHSPRGDLLVVHAGSQGSYHDTELSRRSASVLGFEAPSFTQGTDLMLPGDANYYLREALGLKIGSDGLQGDGDGDAVIALQKFVDFDQVSAVPQV----LAAVAYSRETPGVWF 1738          
BLAST of mRNA_Ecto-sp13_S_contig16022.4411.1 vs. uniprot
Match: D7FR80_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR80_ECTSI)

HSP 1 Score: 321 bits (822), Expect = 6.500e-95
Identity = 184/412 (44.66%), Postives = 216/412 (52.43%), Query Frame = 1
Query:    1 MFLDEGVRFSLSEYDALSIIEWDVLVASDNSFEELYHAAFRVNEEFWVKGSNLEGTSFPSSAEASEMWQVLGHINGNAIYNNDDPAFVEYVEYTRARWGYEHPYDVALWMTISDFPYSRPLYQRYSSKFVVTNLISYVGDEHVTQDTVSDAVAGKTLFIHGGGVAE-----------------------------------------------------------------------FKTASAPXXXXXXXXXXXXXXXXXXKLQ------------------------------------KRRTLGNWRRGNDGDKTPK----------------CTDGCEYTSKDGTRGRVCDANCSRRDVYGTLGCGTRDGAYGTECRACYNDGDMAHKQDTPENRAIMCSTVMPVDVR 867
            MFLDEGV   LSEYDAL+IIEWDVLVA+D SFEELYHAAFRVNEEFWVKGSNLEGT+F SSA+ ++MW+V+GHINGNAIYNN+DPAF EYV+YTRAR+ Y +PYDVALW+TISDFPYS PLYQRYS KFV TNLISYVG EHV  DTVSDA+AG+TLFIHG  V E                                                                        ++AS P                  +                                      +RR+   W    + ++ P+                C   CE+TS DGTRGRVCD+ C     YG LGC  + G YG  CR C+ND D A  +DTP+NRAIMCST++PV  R
Sbjct:   65 MFLDEGVHAELSEYDALAIIEWDVLVATDRSFEELYHAAFRVNEEFWVKGSNLEGTNFHSSADVTDMWRVMGHINGNAIYNNNDPAFAEYVDYTRARFKYRYPYDVALWLTISDFPYSWPLYQRYSRKFVTTNLISYVGYEHVDHDTVSDAIAGQTLFIHGSRVDEGSGASIKETAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTSESASEPSRLRMRSERPFSRLETPERHVAARREEEEVAATPEAVPQEASPARRRLKGGNTGLPIERRSFRRWGEDRELEEGPEWQTERKWKRFDYGSDSCMAKCEHTSNDGTRGRVCDSTCENGHPYGDLGCSAKGGKYGPHCRTCFNDVDTALMRDTPKNRAIMCSTMLPVGAR 476          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16022.4411.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L131_9PHAE0.000e+083.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FI38_ECTSI0.000e+087.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L4M7_9PHAE4.170e-21849.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LJP6_9PHAE7.740e-19842.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHL7_9PHAE9.820e-19746.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FI63_ECTSI6.600e-16532.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LLE5_ECTSI5.370e-14643.91Imm upregulated 5 n=1 Tax=Ectocarpus siliculosus T... [more]
D7FI39_ECTSI2.390e-14430.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FI37_ECTSI6.320e-13565.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FR80_ECTSI6.500e-9544.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16022contigEcto-sp13_S_contig16022:1..3074 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score521.2
Seed ortholog evalue6.2e-145
Seed eggNOG ortholog2880.D7FI63
Model size1692
Hectar predicted targeting categoryother localisation
Exons6
EggNOG OGs2D0G2@1,2SE3H@2759
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-10_003380.1
Cds size1692
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16022.4411.1prot_Ecto-sp13_S_contig16022.4411.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16022 1..3074 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462846.6112738-CDS-Ecto-sp13_S_contig16022:0..541681462846.6112738-CDS-Ecto-sp13_S_contig16022:0..54Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16022 1..54 -
1681462846.6216412-CDS-Ecto-sp13_S_contig16022:250..6981681462846.6216412-CDS-Ecto-sp13_S_contig16022:250..698Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16022 251..698 -
1681462846.6305964-CDS-Ecto-sp13_S_contig16022:911..12651681462846.6305964-CDS-Ecto-sp13_S_contig16022:911..1265Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16022 912..1265 -
1681462846.6450157-CDS-Ecto-sp13_S_contig16022:1605..18031681462846.6450157-CDS-Ecto-sp13_S_contig16022:1605..1803Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16022 1606..1803 -
1681462846.6563036-CDS-Ecto-sp13_S_contig16022:1973..22091681462846.6563036-CDS-Ecto-sp13_S_contig16022:1973..2209Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16022 1974..2209 -
1681462846.6651502-CDS-Ecto-sp13_S_contig16022:2672..30741681462846.6651502-CDS-Ecto-sp13_S_contig16022:2672..3074Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16022 2673..3074 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16022.4411.1

>prot_Ecto-sp13_S_contig16022.4411.1 ID=prot_Ecto-sp13_S_contig16022.4411.1|Name=mRNA_Ecto-sp13_S_contig16022.4411.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=564bp
MFLDEGVRFSLSEYDALSIIEWDVLVASDNSFEELYHAAFRVNEEFWVKG
SNLEGTSFPSSAEASEMWQVLGHINGNAIYNNDDPAFVEYVEYTRARWGY
EHPYDVALWMTISDFPYSRPLYQRYSSKFVVTNLISYVGDEHVTQDTVSD
AVAGKTLFIHGGGVAEFKTASAPPPPPVVVQETAPRSQRRRKLQKRRTLG
NWRRGNDGDKTPKCTDGCEYTSKDGTRGRVCDANCSRRDVYGTLGCGTRD
GAYGTECRACYNDGDMAHKQDTPENRAIMCSTVMPVDVRGLWLSMDNEDY
SLQVGKAMEAEDGEEVEGSFERVDVDGGTEGVISFFEEEAERPFFQDLKR
GNLCAFVGGRVDEEAMWEVTVKSILQFMPGMRVAIAAGANGLDAYERSMG
GRPGVTISSTQNPATASLFADRICGAGTTLILYVEPGSVLSRPFTSKDTH
SPRGDLLVVHGGGHGSYRDDERSRRSGLVLGLEAPSFTRGTDLMLPVGAN
KDLRESLGMEMHANSVRRDGDGATVMALTEPADFEEVSAVPQVRDRMLAA
LAYARNTPGVWFGN
back to top

mRNA from alignment at Ecto-sp13_S_contig16022:1..3074-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16022.4411.1 ID=mRNA_Ecto-sp13_S_contig16022.4411.1|Name=mRNA_Ecto-sp13_S_contig16022.4411.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3074bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16022:1..3074- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTCCTCGACGAGGGCGTCCGCTTCAGCCTCTCTGAGTACGACGCGCT CTCCATAATCGAGTGGGACGTGCTCGTCGCCAGCGACAACTCCTTCGAGG AGCTCTACCACGCCGCGTTCCGCGTGAACGAGGAGTTCTGGGTGAAGGGA AGCAACCTCGAGGGCACCTCGTTCCCCTCAAGCGCTGAGGCGTCGGAGAT GTGGCAGGTGCTCGGCCACATCAACGGCAACGCCATCTACAACAACGACG ATCCGGCGTTCGTCGAGTACGTGGAGTACACCCGGGCCCGCTGGGGATAC GAGCACCCGTACGACGTGGCGCTGTGGATGACTATCTCGGACTTCCCGTA CAGCCGGCCTCTCTACCAGCGTTACTCGAGCAAGTTCGTCGTGACCAACC TGGTGGGTAAACGGGGCGGGGTAGTAGGATCACATTGACGAAACCTTGTT GTGATTTCGAGTAGCTTCGCGTTTGAAGCACGGCGACCGGCATCGTTCGT GTTTGAAGAAGATCGTACTGTACATTGCGTTTTAGCGGTTGTCTGTGCAC ACGGTAGCGTCGATGAAGCTCCAGTTACGATGAACAATGGTACGAAGTTA CGTTATCGCCTTGACGAGATCTGAGGAGGGCAAAGAAATCAGGAATAATC TAGCCGTCTGGTTATCTCGAAAATCGTGATGAGAGTGCACCAGTCACTCC TAGACAACTACAGCAGGTATACAACGATGATTCGCGCGCAACCCGGCGAA GGTATGAGACCCAATCCCCCGCCCCTCTGCTGGGTCAGCAATAACACCCG TCACACCGTTCACTTCGCCATGCCCGCTCCTTTGCACGTCCGCTGCATCG TGAATCGTCTTCAAGATCTCGTACGTCGGAGACGAGCACGTGACCCAGGA CACAGTCTCCGACGCCGTTGCCGGCAAGACTCTTTTTATCCACGGCGGTG GCGTAGCGGAATTTAAAACCGCCTCCGCCCCGCCCCCGCCCCCCGTTGTC GTCCAAGAAACTGCGCCAAGGAGCCAGCGTCGCCGAAAACTCCAGAAGCG GAGGACGCTGGGGAATTGGAGGAGGGGGAATGACGGAGATAAAACCCCCA AGTGCGTTTGCCGCGGCAATTGGTATTGGTTCTTGCTGTTGACTTGATGA TTTTTAAATATCTTCCTACCACAACGAACGGAGCAGTTGGCCATGTTCCA CCAAGATCGCGTTGGCTCGTACAACAGTTAACCTCCCGCCGCCGCTCCCC GTCTCCCGGCGCTGCTAACAGGTGCACGGACGGGTGCGAGTACACGAGCA AGGATGGAACCAGGGGACGCGTGTGTGACGCGAACTGCTCGAGGCGTGAC GTGTACGGTACCCTCGGATGCGGCACCAGGGACGGAGCGTACGGGACAGA ATGCCGCGCTTGCTACAACGACGGCGACATGGCACACAAACAAGATACAC CGGAGAACCGGGCGATCATGTGAGACGCATGACGCGCACGACGTGGCCTT GGACGACCTCTTGCTAGCGGTAGCGCCTGATGAAATGGAGACAATCAATA TTGTCTGACTCATGAGTGATAGTTTCAAGCTCAGGTTTGCATATGGTGAC ATCCTCCCCTGAACGATGTGTGTGGGACACAGCTCGGCTGATGAGACCTG CCCTGCCCAACATGTGTCCAGTGCAGTGCTGTAGCGGTTGCGGGATGGCG ACGGCGGCTGGCGACTTTTGTTGGACGACACTTTTCATTTTTCGCTCGAC GCTTCGCCTGATGCACCCCGTTCTCCCGCCTATTTCTCTCGCCCGACTGA TCTCGACAGGTGCTCGACCGTGATGCCAGTAGACGTTCGCGGCCTTTGGC TATCCATGGACAACGAGGACTATTCTCTTCAAGTCGGGAAAGCGATGGAA GCAGAGGATGGCGAGGAAGTGGAGGGCAGCTTCGAGCGTGTAGACGTCGA TGGTGGCACGGAGGGCGTTATCTCCTTTTTCGAGGAGGAAGCCGAACGAC CGTTTTTCCAGGACCTGAAGCGCGGCAACCTGTGCGCCTTCGTCGGAGGT CGGGTCGACGAGGAGGCCATGTGGGAGGTGACGGTGAAGAGCATCCTGCA GTTCATGCCGGGCATGAGGGTGGCCATCGCGGCTGGGGCGAACGGACTTG ACGCATACGAGAGGTGTGTGTGTCGGGGTATTATAGGATCAGTTTGTCCC GGCTTTCCCGTGTGTGCTGCGTCGGTCGTTCACGTTGACGTTTCCCGTGT GTAGAAGGACAATGGGCTTGTAATGAAGCTCTCCGTACCCCGTACTGTAG GATATGTTTTCTTGTAACGACCGTGTCTTCTCTTGTCGTGTCCCTTTCCC TCCTACTCGACTCCGGACAATTCTAGGTCCATGGGCGGTCGCCCCGGTGT CACCATCTCGAGCACCCAGAACCCCGCCACGGCGAGCCTGTTCGCCGATC GGATCTGCGGGGCCGGCACCACTCTCATCTTGTACGTCGAGCCGGGGTCC GTTCTCTCCCGGCCCTTCACCTCCAAGGACACACACTCCCCGCGGGGCGA CCTGCTGGTCGTGCACGGGGGCGGTCATGGGAGCTACCGCGACGACGAGC GGAGCCGCCGCTCGGGGTTGGTCCTCGGATTGGAGGCGCCGTCCTTCACG CGCGGCACCGACCTGATGCTGCCGGTCGGCGCAAACAAGGACCTCCGGGA GTCGCTGGGAATGGAAATGCACGCAAACAGCGTACGGCGCGACGGCGACG GGGCTACGGTCATGGCCCTGACCGAACCGGCGGACTTCGAGGAAGTCTCC GCCGTCCCTCAGGTAAGAGACCGTGTGCGCACGTGCGCAAAAGGGTGTTT TGCTTACTTTGTTGCCGTTGGCGGGGTGCTTTGGCGCCAGGCGGGGTAGA TGATTTACCGTGAACTGTTTGAGCCTTGGGGCGGTGGCGCGAAAGACCCG AACGTTGCAGACCCCGAACACGCGGCGTTTTGAAATTCCTTCTGCTGTGC TCTTGCTTTCTTTGTTGCAGATGTTGGCCGCGCTGGCCTATGCCCGCAAC ACGCCGGGAGTGTGGTTTGGCAAC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16022:1..3074-

>mRNA_Ecto-sp13_S_contig16022.4411.1 ID=mRNA_Ecto-sp13_S_contig16022.4411.1|Name=mRNA_Ecto-sp13_S_contig16022.4411.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1692bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16022:1..3074- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTCCTCGACGAGGGCGTCCGCTTCAGCCTCTCTGAGTACGACGCGCT
CTCCATAATCGAGTGGGACGTGCTCGTCGCCAGCGACAACTCCTTCGAGG
AGCTCTACCACGCCGCGTTCCGCGTGAACGAGGAGTTCTGGGTGAAGGGA
AGCAACCTCGAGGGCACCTCGTTCCCCTCAAGCGCTGAGGCGTCGGAGAT
GTGGCAGGTGCTCGGCCACATCAACGGCAACGCCATCTACAACAACGACG
ATCCGGCGTTCGTCGAGTACGTGGAGTACACCCGGGCCCGCTGGGGATAC
GAGCACCCGTACGACGTGGCGCTGTGGATGACTATCTCGGACTTCCCGTA
CAGCCGGCCTCTCTACCAGCGTTACTCGAGCAAGTTCGTCGTGACCAACC
TGATCTCGTACGTCGGAGACGAGCACGTGACCCAGGACACAGTCTCCGAC
GCCGTTGCCGGCAAGACTCTTTTTATCCACGGCGGTGGCGTAGCGGAATT
TAAAACCGCCTCCGCCCCGCCCCCGCCCCCCGTTGTCGTCCAAGAAACTG
CGCCAAGGAGCCAGCGTCGCCGAAAACTCCAGAAGCGGAGGACGCTGGGG
AATTGGAGGAGGGGGAATGACGGAGATAAAACCCCCAAGTGCACGGACGG
GTGCGAGTACACGAGCAAGGATGGAACCAGGGGACGCGTGTGTGACGCGA
ACTGCTCGAGGCGTGACGTGTACGGTACCCTCGGATGCGGCACCAGGGAC
GGAGCGTACGGGACAGAATGCCGCGCTTGCTACAACGACGGCGACATGGC
ACACAAACAAGATACACCGGAGAACCGGGCGATCATGTGCTCGACCGTGA
TGCCAGTAGACGTTCGCGGCCTTTGGCTATCCATGGACAACGAGGACTAT
TCTCTTCAAGTCGGGAAAGCGATGGAAGCAGAGGATGGCGAGGAAGTGGA
GGGCAGCTTCGAGCGTGTAGACGTCGATGGTGGCACGGAGGGCGTTATCT
CCTTTTTCGAGGAGGAAGCCGAACGACCGTTTTTCCAGGACCTGAAGCGC
GGCAACCTGTGCGCCTTCGTCGGAGGTCGGGTCGACGAGGAGGCCATGTG
GGAGGTGACGGTGAAGAGCATCCTGCAGTTCATGCCGGGCATGAGGGTGG
CCATCGCGGCTGGGGCGAACGGACTTGACGCATACGAGAGGTCCATGGGC
GGTCGCCCCGGTGTCACCATCTCGAGCACCCAGAACCCCGCCACGGCGAG
CCTGTTCGCCGATCGGATCTGCGGGGCCGGCACCACTCTCATCTTGTACG
TCGAGCCGGGGTCCGTTCTCTCCCGGCCCTTCACCTCCAAGGACACACAC
TCCCCGCGGGGCGACCTGCTGGTCGTGCACGGGGGCGGTCATGGGAGCTA
CCGCGACGACGAGCGGAGCCGCCGCTCGGGGTTGGTCCTCGGATTGGAGG
CGCCGTCCTTCACGCGCGGCACCGACCTGATGCTGCCGGTCGGCGCAAAC
AAGGACCTCCGGGAGTCGCTGGGAATGGAAATGCACGCAAACAGCGTACG
GCGCGACGGCGACGGGGCTACGGTCATGGCCCTGACCGAACCGGCGGACT
TCGAGGAAGTCTCCGCCGTCCCTCAGGTAAGAGACCGTATGTTGGCCGCG
CTGGCCTATGCCCGCAACACGCCGGGAGTGTGGTTTGGCAAC
back to top