mRNA_Ecto-sp13_S_contig1602.4409.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1602.4409.1
Unique NamemRNA_Ecto-sp13_S_contig1602.4409.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1602.4409.1 vs. uniprot
Match: A0A6H5KF81_9PHAE (Arf-GAP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KF81_9PHAE)

HSP 1 Score: 615 bits (1586), Expect = 9.470e-211
Identity = 489/552 (88.59%), Postives = 495/552 (89.67%), Query Frame = 3 
Query:   66 MQDQYLPPDVVKSTFRRLRSKPDNKVCFDCPTRNPTWASATYGIFICYDCSAVHRNMGVHVTFVRSIELDKWKPSEMEVMKRGGNGNARSFFRSHGVTDMEKSEQKYHSRAAQMYRAHLKKAMADPGVVTPPQSPREDPVDSVADGLDRLMRDVDGKPAASALARGFTNGGAAAXXXXXXXXXXXXXXXXXXXFAQAFPSSQPAAPTNGSAAAGRHTAADVPAPPAXXXPAPVKPYEPKPRGSLSVSPPTAPAAAAGAVDEPKAAPVVRLSSSKSPPPRVRKGGAKKMXXXXXXXXXXXSGGAAVKLSGFDDTTXXXXXXXXXXXXXXXXXX-DADLALARKLXXXXXXXXXXXXXXXRLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAYGYRNGASGIGSXXXXXXXXXXXXXXXXXXXX-FDKDKYKNVKGIGSDMLFGAKDDDPDEQARRAMKNQEYSQSAAISSDMYXDXXXXXXXXXXYDGGGEGRIGDMADQIAASAAAEIREVAQTAGKLKDMTKGFLDDLQNMVG 1715
            MQDQYLPPDVVKSTFRRLRSKPDNKVCFDCPTRNPTWASATYGIFICYDCSAVHRNMGVHVTFVRSIELDKWKPSEMEVMKRGGNGNARSFFRSHGVTDMEKSEQKYHSRAAQMYRAHLKKAMADPGVVTPPQSPREDPVD+VADGLDRLM D+DGKPAASA A+GFTNGG   XXXXXXXX           FAQAFPSS PAAPT+GSAAAG H AADVPAPPA    APVKPYEPKPRGSLSVSPPTAPAAAAGAVDEPKA PVVRL SSKSPPPR+RKGGAKKMXXXXXXXXXXXSGGAAVKLSGF+DTT  XXXXXXXXXXXXXXXX DADLALARKLXXXXXXXXXXXXXXXRLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX             XXXXXXXXXXXXXXXXXXX  FDK KYKNVKGIGSDMLFGAKDDDPDEQARRAMKNQEYSQSAAISSDMYX XXXXXXXXXXYDGG     GDMADQIAASAA      AQ AGKLKDMTKGFLDDLQNMVG
Sbjct:    1 MQDQYLPPDVVKSTFRRLRSKPDNKVCFDCPTRNPTWASATYGIFICYDCSAVHRNMGVHVTFVRSIELDKWKPSEMEVMKRGGNGNARSFFRSHGVTDMEKSEQKYHSRAAQMYRAHLKKAMADPGVVTPPQSPREDPVDNVADGLDRLMEDMDGKPAASAPAKGFTNGGXXXXXXXXXXXPSVDAAAAAAKFAQAFPSSHPAAPTSGSAAAGGHAAADVPAPPA----APVKPYEPKPRGSLSVSPPTAPAAAAGAVDEPKATPVVRLISSKSPPPRIRKGGAKKMXXXXXXXXXXXSGGAAVKLSGFEDTTTAXXXXXXXXXXXXXXXXXDADLALARKLXXXXXXXXXXXXXXXRLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSFDKGKYKNVKGIGSDMLFGAKDDDPDEQARRAMKNQEYSQSAAISSDMYXXXXXXXXXXXXYDGGVG--FGDMADQIAASAA------AQAAGKLKDMTKGFLDDLQNMVG 540
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BLAST of mRNA_Ecto-sp13_S_contig1602.4409.1 vs. uniprot
Match: A0A835YU03_9STRA (Arf-GAP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU03_9STRA)

HSP 1 Score: 204 bits (519), Expect = 1.170e-57
Identity = 98/158 (62.03%), Postives = 124/158 (78.48%), Query Frame = 3 
Query:   72 DQYLPPDVVKSTFRRLRSKPDNKVCFDCPTRNPTWASATYGIFICYDCSAVHRNMGVHVTFVRSIELDKWKPSEMEVMKRGGNGNARSFFRSHGVTDMEKSEQKYHSRAAQMYRAHLKKAMA---DPG--VVTPPQSPREDPVDSVADGLDRLMRDVD 530
            + Y+  D+VKSTFRRL++  DNKVCFDCPTRNPTWAS TYGIF+CYDCSAVHRNMGVH+TFVRS+ELDKW+  E++ MKRGGN  AR++F+SHGV+DM K++ KY SRAA+ YRAHLK+ +A   DP   V       R+    ++A GLDR+MRD++
Sbjct:    5 NDYVEADLVKSTFRRLQAHRDNKVCFDCPTRNPTWASVTYGIFLCYDCSAVHRNMGVHITFVRSVELDKWRQWELDSMKRGGNAAARAYFQSHGVSDMGKTDAKYRSRAAEAYRAHLKQLIAETPDPAADVWNSAHGARDADEAAIACGLDRIMRDIE 162
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BLAST of mRNA_Ecto-sp13_S_contig1602.4409.1 vs. uniprot
Match: A0A7S2B6H1_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B6H1_9STRA)

HSP 1 Score: 177 bits (450), Expect = 1.250e-44
Identity = 90/158 (56.96%), Postives = 113/158 (71.52%), Query Frame = 3 
Query:   66 MQDQYLPPDVVKSTFRRLRSKPDNKVCFDCPTRNPTWASATYGIFICYDCSAVHRNMGVHVTFVRSIELDKWKPSEMEVMKRGGNGNARSFFRSHGVTDME-KSEQKYHSRAAQMYRAHLKKAMADPGVVTPPQSPREDP-VDSVADGLDRLMRDVDG 533
            M  +Y+  +V  S F++LR+K  NKVCFDC +RNPTWASAT+GIFIC DCSA HR MGVH+TFVRS+ELD+W P ++++MK GGN NA +FFRSHGV DM  K EQKY S AA+ Y+ HLKK M+   V   P+ P+  P VD     +D L+ DV G
Sbjct:    1 MNGKYVTQEVKNSAFKKLRTKGANKVCFDCSSRNPTWASATFGIFICLDCSASHRRMGVHITFVRSVELDEWTPDQLKMMKVGGNENAGTFFRSHGVRDMHIKHEQKYVSSAARQYKNHLKKLMSTEDVEEVPEEPQRKPSVD-----IDSLLLDVQG 153
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BLAST of mRNA_Ecto-sp13_S_contig1602.4409.1 vs. uniprot
Match: A0A4D9D0S2_9STRA (Arf-GAP domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D0S2_9STRA)

HSP 1 Score: 178 bits (451), Expect = 1.680e-44
Identity = 85/153 (55.56%), Postives = 110/153 (71.90%), Query Frame = 3 
Query:   75 QYLPPDVVKSTFRRLRSKPDNKVCFDCPTRNPTWASATYGIFICYDCSAVHRNMGVHVTFVRSIELDKWKPSEMEVMKRGGNGNARSFFRSHGVTDMEKSEQKYHSRAAQMYRAHLKKAMADP-----GVVTPPQSPREDPVDSVADGLDRLM 518
            +Y+      + F+R++S+P+N+VCFDCPTRNPTWASATYG+FICY+CSA HR +GVH+TFVRS++LD+W P ++  M+ GGN NA  FFR HGVT   K EQKY SRAA++Y+AHL K +AD        + PP  P  D V +V  GLD LM
Sbjct:    3 KYVTTADRMAAFKRMKSRPENQVCFDCPTRNPTWASATYGVFICYNCSATHRALGVHITFVRSVDLDEWTPQQLLTMRLGGNSNAAQFFRRHGVTHGGKVEQKYSSRAAELYKAHLSKLVADKILMDANALEPP--PPTDTVAAVGCGLDNLM 153
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BLAST of mRNA_Ecto-sp13_S_contig1602.4409.1 vs. uniprot
Match: A0A7S2SFF1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SFF1_9STRA)

HSP 1 Score: 169 bits (427), Expect = 8.970e-44
Identity = 75/127 (59.06%), Postives = 98/127 (77.17%), Query Frame = 3 
Query:   63 TMQDQYLPPDVVKSTFRRLRSKPDNKVCFDCPTRNPTWASATYGIFICYDCSAVHRNMGVHVTFVRSIELDKWKPSEMEVMKRGGNGNARSFFRSHGVTDME-KSEQKYHSRAAQMYRAHLKKAMAD 440
            TM    +P +   S F+RL++K DN++CFDCPTRNPTWASAT+G+F+C DCSA HR MGVHVTFVRS+ELD+W   ++  M+ GGNGNA +FFRSHGV D+  K+E+KY S AA+ Y+ HLKK + +
Sbjct:   10 TMAATCVPSEAKTSFFKRLKAKRDNRICFDCPTRNPTWASATFGVFLCLDCSAAHRRMGVHVTFVRSVELDEWTEKQLRTMEVGGNGNAAAFFRSHGVRDLHIKTEEKYQSSAARHYKNHLKKLLEE 136
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BLAST of mRNA_Ecto-sp13_S_contig1602.4409.1 vs. uniprot
Match: A0A7S3HR90_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HR90_9STRA)

HSP 1 Score: 162 bits (411), Expect = 1.290e-39
Identity = 80/159 (50.31%), Postives = 108/159 (67.92%), Query Frame = 3 
Query:   78 YLPPDVVKSTFRRLRSKPDNKVCFDCPTRNPTWASATYGIFICYDCSAVHRNMGVHVTFVRSIELDKWKPSEMEVMKRGGNGNARSFFRSHGVTDMEK-SEQKYHSRAAQMYRAHLKKAMADPGVVTPPQSPREDPVDSVADGLDRLMRDVDGKPAASA 551
            Y+      + F++LR+K DNKVCFDC  RNP+WAS TYG+FIC DCSAVHR +GVH+TFVRS +LD+W   ++++M+  GNGNAR FF+ HGVTD +  SE+KY S+AA  Y  HL+K + D       +S  ED  D+ A GLD L+  +    +A+A
Sbjct:    7 YVDTVEKNNVFKKLRAKLDNKVCFDCSARNPSWASVTYGVFICLDCSAVHRRLGVHITFVRSCDLDEWTQEQLDIMRVSGNGNAREFFKKHGVTDAQMGSEKKYSSKAAPEYLKHLQKLLHDGPQTLRSRSRSEDVNDNHAKGLDGLINSLSMNSSATA 165
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BLAST of mRNA_Ecto-sp13_S_contig1602.4409.1 vs. uniprot
Match: A0A7S1CBA6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CBA6_9STRA)

HSP 1 Score: 153 bits (386), Expect = 3.380e-39
Identity = 82/176 (46.59%), Postives = 107/176 (60.80%), Query Frame = 3 
Query:   78 YLPPDVVKSTFRRLRSKPDNKVCFDCPTRNPTWASATYGIFICYDCSAVHRNMGVHVTFVRSIELDKWKPSEMEVMKRGGNGNARSFFRSHGVTDME--KSEQKYHSRAAQMYRAHLKKAMADPGVVTPPQSPREDPVDSVADGLDRL----MRDVDGKPAASALARGFTNGGAAA 587
            YL  +       RLR+ P N VCFDC  RNP+WASAT+G+FIC  CSA HR MGVH++FVRS +LDKW P +ME+M+ GGN NA  FF++ G +D    K E+KYHSRAA +Y+ HL++ +        P++    P     DGLD L     R + G  AA ++  G T GG  A
Sbjct:    1 YLTKEETVRKMARLRALPGNNVCFDCGARNPSWASATFGVFICIGCSATHRRMGVHISFVRSCDLDKWTPDQMELMRIGGNANAAKFFKTKGWSDATGGKHEEKYHSRAANLYKQHLQRLVQTSSTPASPEAASA-PEGFTIDGLDDLELSVTRSISGTSAARSV--GSTGGGPPA 173
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BLAST of mRNA_Ecto-sp13_S_contig1602.4409.1 vs. uniprot
Match: A0A1D6GD40_MAIZE (ADP-ribosylation factor GTPase-activating protein AGD10 n=2 Tax=Zea mays TaxID=4577 RepID=A0A1D6GD40_MAIZE)

HSP 1 Score: 151 bits (382), Expect = 3.550e-39
Identity = 68/119 (57.14%), Postives = 87/119 (73.11%), Query Frame = 3 
Query:   72 DQYLPPDVVKSTFRRLRSKPDNKVCFDCPTRNPTWASATYGIFICYDCSAVHRNMGVHVTFVRSIELDKWKPSEMEVMKRGGNGNARSFFRSHGVTDMEKSEQKYHSRAAQMYRAHLKK 428
            D Y   + +   FRRL++KP+NK+CFDC  +NPTWAS TYGIF+C DCSAVHR++GVH+TFVRS  LD W P ++++M  GGN  A +FF+ HG TD  K E KY SRAA++YR  L K
Sbjct:   11 DAYTDKNAI---FRRLKAKPENKMCFDCNAKNPTWASVTYGIFLCLDCSAVHRSLGVHITFVRSTNLDSWTPDQLKMMAFGGNNRAHAFFKQHGWTDGGKVEAKYTSRAAELYRQMLNK 126
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BLAST of mRNA_Ecto-sp13_S_contig1602.4409.1 vs. uniprot
Match: K0TKZ9_THAOC (Arf-GAP domain-containing protein (Fragment) n=2 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TKZ9_THAOC)

HSP 1 Score: 152 bits (384), Expect = 8.310e-39
Identity = 66/116 (56.90%), Postives = 87/116 (75.00%), Query Frame = 3 
Query:   81 LPPDVVKSTFRRLRSKPDNKVCFDCPTRNPTWASATYGIFICYDCSAVHRNMGVHVTFVRSIELDKWKPSEMEVMKRGGNGNARSFFRSHGVTDMEKSEQKYHSRAAQMYRAHLKK 428
            +P     + FRRL++ P NK+CFDCP   PTWAS TYGIF+C DCSA HRNMGVH+TFVR+++LD+W   +++ MK GGN NAR FF  HG +DM+ S +KY+ +AA+ YRA L+K
Sbjct:   23 IPTADKNAQFRRLKNLPGNKLCFDCPATRPTWASVTYGIFLCLDCSAAHRNMGVHLTFVRAVDLDEWTQRQIDAMKIGGNENARKFFSKHGCSDMKGSNKKYNHKAARAYRAELEK 138
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BLAST of mRNA_Ecto-sp13_S_contig1602.4409.1 vs. uniprot
Match: A0A7N1A3H7_KALFE (Arf-GAP domain-containing protein n=2 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N1A3H7_KALFE)

HSP 1 Score: 157 bits (396), Expect = 4.290e-38
Identity = 74/133 (55.64%), Postives = 94/133 (70.68%), Query Frame = 3 
Query:  102 STFRRLRSKPDNKVCFDCPTRNPTWASATYGIFICYDCSAVHRNMGVHVTFVRSIELDKWKPSEMEVMKRGGNGNARSFFRSHGVTDMEKSEQKYHSRAAQMYRAHLKKAMA-----DPGVVTPPQSPREDPV 485
            + FR+L+SKP+NKVCFDC  +NPTWAS TYGIF+C DCSAVHR++GVH++FVRS  LD W P ++++M  GGNG AR FF+ HG  D  K E KY SRAA +Y+  L K +A     D G+   P +PR  PV
Sbjct:   11 AVFRKLKSKPENKVCFDCDAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSPEQLKMMSYGGNGRARVFFKQHGWIDGSKVEAKYTSRAADLYKQLLSKEIASSVVEDLGLPESPVAPRPAPV 143
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1602.4409.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KF81_9PHAE9.470e-21188.59Arf-GAP domain-containing protein n=2 Tax=Ectocarp... [more]
A0A835YU03_9STRA1.170e-5762.03Arf-GAP domain-containing protein n=1 Tax=Tribonem... [more]
A0A7S2B6H1_9STRA1.250e-4456.96Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A4D9D0S2_9STRA1.680e-4455.56Arf-GAP domain-containing protein n=2 Tax=Monodops... [more]
A0A7S2SFF1_9STRA8.970e-4459.06Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3HR90_9STRA1.290e-3950.31Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S1CBA6_9STRA3.380e-3946.59Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A1D6GD40_MAIZE3.550e-3957.14ADP-ribosylation factor GTPase-activating protein ... [more]
K0TKZ9_THAOC8.310e-3956.90Arf-GAP domain-containing protein (Fragment) n=2 T... [more]
A0A7N1A3H7_KALFE4.290e-3855.64Arf-GAP domain-containing protein n=2 Tax=Kalancho... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1602contigEcto-sp13_S_contig1602:5673..10950 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score633.3
Seed ortholog evalue1.1e-178
Seed eggNOG ortholog2880.D8LT65
Preferred nameARFGAP2
Model size2453
KEGG koko:K11855,ko:K12493,ko:K16682
KEGG Pathwayko04144,ko04390,ko04391,ko04392,map04144,map04390,map04391,map04392
Hectar predicted targeting categoryother localisation
GOsGO:0001654,GO:0001745,GO:0002790,GO:0003674,GO:0005096,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005793,GO:0005794,GO:0005798,GO:0005829,GO:0005886,GO:0006810,GO:0006886,GO:0006888,GO:0006890,GO:0006900,GO:0006901,GO:0006903,GO:0006996,GO:0007275,GO:0007423,GO:0008047,GO:0008104,GO:0008150,GO:0008565,GO:0009306,GO:0009653,GO:0009887,GO:0009987,GO:0012505,GO:0012506,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0030117,GO:0030120,GO:0030126,GO:0030135,GO:0030137,GO:0030234,GO:0030659,GO:0030660,GO:0030662,GO:0030663,GO:0030695,GO:0031090,GO:0031410,GO:0031982,GO:0032501,GO:0032502,GO:0032940,GO:0032991,GO:0033036,GO:0034613,GO:0035964,GO:0042886,GO:0043085,GO:0043087,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043547,GO:0044093,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046903,GO:0046907,GO:0048193,GO:0048194,GO:0048199,GO:0048200,GO:0048205,GO:0048475,GO:0048513,GO:0048592,GO:0048731,GO:0048749,GO:0048856,GO:0050790,GO:0051179,GO:0051234,GO:0051336,GO:0051345,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0060589,GO:0061024,GO:0065007,GO:0065009,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0090596,GO:0097708,GO:0098588,GO:0098772,GO:0098796,GO:0098805
Exons4
EggNOG free text desc.GTPase activator activity
EggNOG OGsCOG5347@1,KOG0706@2759
Ec32 ortholog descriptionArf GTPase activating protein
Ec32 orthologEc-12_005420.1
EC3.4.19.12
Cds size1653
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko03019,ko03036,ko04121,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1602.4409.1prot_Ecto-sp13_S_contig1602.4409.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1602 5738..10215 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462846.4639194-UTR-Ecto-sp13_S_contig1602:5672..57371681462846.4639194-UTR-Ecto-sp13_S_contig1602:5672..5737Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1602 5673..5737 +
1681462846.514722-UTR-Ecto-sp13_S_contig1602:10215..109501681462846.514722-UTR-Ecto-sp13_S_contig1602:10215..10950Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1602 10216..10950 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462846.4742875-CDS-Ecto-sp13_S_contig1602:5737..58121681462846.4742875-CDS-Ecto-sp13_S_contig1602:5737..5812Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1602 5738..5812 +
1681462846.4825253-CDS-Ecto-sp13_S_contig1602:7545..78331681462846.4825253-CDS-Ecto-sp13_S_contig1602:7545..7833Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1602 7546..7833 +
1681462846.4931433-CDS-Ecto-sp13_S_contig1602:8160..94021681462846.4931433-CDS-Ecto-sp13_S_contig1602:8160..9402Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1602 8161..9402 +
1681462846.504403-CDS-Ecto-sp13_S_contig1602:10167..102151681462846.504403-CDS-Ecto-sp13_S_contig1602:10167..10215Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1602 10168..10215 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1602.4409.1

>prot_Ecto-sp13_S_contig1602.4409.1 ID=prot_Ecto-sp13_S_contig1602.4409.1|Name=mRNA_Ecto-sp13_S_contig1602.4409.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=551bp
MQDQYLPPDVVKSTFRRLRSKPDNKVCFDCPTRNPTWASATYGIFICYDC
SAVHRNMGVHVTFVRSIELDKWKPSEMEVMKRGGNGNARSFFRSHGVTDM
EKSEQKYHSRAAQMYRAHLKKAMADPGVVTPPQSPREDPVDSVADGLDRL
MRDVDGKPAASALARGFTNGGAAAESLANGGAPAADAAAAAAKFAQAFPS
SQPAAPTNGSAAAGRHTAADVPAPPAAPAPAPVKPYEPKPRGSLSVSPPT
APAAAAGAVDEPKAAPVVRLSSSKSPPPRVRKGGAKKMGARKLGAMKIGS
GGAAVKLSGFDDTTTAPAAVAAATPGAAGGGEDADLALARKLQEEEDLAA
AVAAPSSRLAAAASAALAPQPSKSKAARAGEGGGGSIYRSANDSSSSSSY
GGGAGGAYGYRNGASGIGSSSISYGNGGGYGGGGGGGSSFDKDKYKNVKG
IGSDMLFGAKDDDPDEQARRAMKNQEYSQSAAISSDMYFDREEGGGGGGG
YDGGGEGRIGDMADQIAASAAAEIREVAQTAGKLKDMTKGFLDDLQNMVG
*
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mRNA from alignment at Ecto-sp13_S_contig1602:5673..10950+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1602.4409.1 ID=mRNA_Ecto-sp13_S_contig1602.4409.1|Name=mRNA_Ecto-sp13_S_contig1602.4409.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5278bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1602:5673..10950+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGAGATAGGGCGTGTGTTGTGTGGTGAGGGTCCACCGTGCCTGCACAACC
GAGGCTGAGGGGACGATGCAGGACCAATACTTGCCGCCAGACGTGGTGAA
GAGCACCTTTCGGCGATTGCGAAGCAAACCCGATAACAAGGTGTGAAATT
TCTTCTTCGAAAATCGAGACGGGGGACGTACGATCGGTGTACTGTCATTG
TCGTTGCCATTCTATGCCGACAGCAATCGGGTCGTGTCTCCTTCTGTTGG
GAAGTTTTCAACGAAGCTAGCTGGCGTGGGTAGTGAATGTGCTGTTTTTC
CTTTGTCTGTGCCTTCACGGTCCATTATACATACAAAACAGATGGACTTT
GTTGTGCGCAGACCGCAGAGACAGCAGTCCTACTGCCGCCGACTAGATAA
GAACAAAGAACTAGAGCCACAGACGGAGAGAGCGTAAAGAACTCACACAC
ACACACACACACACACACACACACATCTTGCGGCCGCTCCCTGTTAAACT
CGGCTCTGTGTGGAGGACGCCAACACCTGTCGTGTTGCCCTTCGGTTTGG
TGCTCCCTTTTCTCGTCCTGTTATTTGTAGGCTCCTTCCTCGCTCGGCGT
GGGGGACTCCGCAGACAGCGGCAACCGTTTGTCGTGGTCATTGACCACCT
TACTCAACAGGGATACTCTGAGCACAGCTGTTGTTTACCCTATCTGGTCG
CCGAGAACAATAGCAGGCGTGGGATAATGGCGTATTTCATCCTCTTGGCC
AACGTTATGTTTTATGCGTAGGGCATCCTTCGCCCGAGGTTGCCGGGGGA
AAGTTACAAAGTTGTAGATTCGGAAATCTGTCCGCTTCCCCTTGCGATGC
AAAGACAACCAGTAGCACAGCAGGCACATAGCTCCAGGTAAAATTCTCTT
GTGAAAGCGAAATCCGCAGGGCGCGCATGCTTTCGAGCGCCGAAGAAGGC
CCGCCCGTTGACGAGCACACCTTTTGGCAAGTACAGTTGCAGCGCTCGGC
ACTCCGTGAGGAACGGAAGGCTTTGTATTCCCAGCTACAGTACTGCTGAA
GTGGACCCGGTGTACTGCTGTACCATAGTCTGGGACAACGTGTTCGTACA
CAAACTTCTGCTATCAACCTTTGGCATAACCAAGGTTGGTATTCTTAGAG
AGGTTGGGCCTGCGTGCCGTACGCACAGAGTTCATGATTTCATGGGCGTC
CCCGGCTGCCGTGTACTCTATCCGATTGCTGGAAAACGTCTTAAAAGTCC
TCCTTTCTCATGCGCGGGCCAGGGGGCTCCAACTTTTTCCGACGAGAATC
TAATCAAACAGCTGATCGGCTGATGTGGAAGAAAGTAATGAGCTGCTCGT
GTGTACACAAATTCGATGTCAGGGTCGACAAGGGAAAGGAATGAATGGCT
GAATCCTTCCGCGGTAAAATTGTAGCCCGCACCGCAGAGGGAAGGCTAAG
AGAACAGAAACAACCACCGCGTGCTCGCTCCTGAGGGGCCTTCCACCCAT
GTCGCCATGGCTGATGCGTCCACAACACACGAAGAAAAGTTGCATTATTT
CACATCTGGAATGCATGGGATGGACAGACACACACACTCGGGGCGATTGT
TGCACCTGCGATGCTATCGCTGAGACGGCAACGTCGACTTGTGCCCCCAC
ACACGCAACAGCAATCGTTTCGCCCGCTTTGCGTGGGACAACCTTGACCC
GACTCACGCCCAACTTGTGCACTCCAAGCTGTTGTCAAACGACCACAGCA
TCGAAGAGCATATCTGCCTCCCCCCCACGCCCCCTTCGCCTGACCGCTGG
TGCCCCACGTCACCGCACATCGTTGACCTGGTGCGTCTGTCAAATCATCT
ACGCAAACCCAACCATTTTCAAGGTTTGTTTCGACTGTCCGACCCGGAAT
CCCACGTGGGCATCGGCGACGTACGGCATTTTCATCTGCTACGACTGCTC
CGCGGTGCACCGGAACATGGGGGTGCACGTGACCTTCGTCCGCAGCATCG
AGCTGGACAAGTGGAAGCCGTCGGAGATGGAGGTCATGAAGCGCGGCGGC
AACGGCAACGCGCGTTCCTTCTTCCGCTCCCACGGGGTCACCGACATGGA
GAAGTCGGAGCAGAAGTACCACTCGCGCGCGGCGCAGATGTACCGCGCCC
ACCTCAAGAAGGTTCGGTGGCTTTCTCTTTTGGAGTATCTCGCAATTATT
AGGGGGACATTGTCGTTCCTCGGCAGTTCCATCGGCTGCTGCTGCTGCTG
CTGCTGCTACTGTTGTTTCTCTTCGGGACTTCTACAAATTTCCCAGCTAC
AGGAACACATTGTTTCTTTCAAGCACGAAGTTTAAGGAGAGGAACAGGGG
TAGTAGTGCGCAGCAAAACTTTTACCGCCGAATCGTCGTCTCGCCTCATA
TCCCTCCTCCGTCCTCCTTTCTGTTGTCCGTCCATCCATCCGGGGGCGCG
GCTGGTATCATTGATCGATTCGGTACCGAACCTGGCAGGCGATGGCCGAT
CCCGGCGTCGTGACCCCCCCGCAGTCGCCGAGAGAGGACCCGGTGGACAG
CGTCGCCGACGGCCTGGACCGCCTCATGCGGGACGTGGACGGCAAGCCGG
CGGCTTCGGCGCTAGCTAGGGGTTTCACGAACGGCGGCGCAGCAGCCGAG
AGCCTCGCAAACGGCGGCGCCCCCGCGGCGGACGCGGCCGCAGCGGCGGC
GAAGTTCGCACAAGCCTTCCCCTCGTCGCAGCCCGCCGCCCCGACCAACG
GGTCGGCAGCGGCAGGCAGGCATACCGCTGCTGATGTTCCCGCTCCGCCG
GCGGCGCCGGCGCCGGCGCCGGTCAAGCCGTACGAGCCGAAGCCCCGCGG
GAGCCTGTCGGTGTCCCCGCCAACGGCTCCAGCGGCGGCGGCGGGCGCGG
TAGACGAGCCGAAGGCGGCGCCGGTGGTGCGACTCAGCTCCTCCAAGTCG
CCCCCGCCGCGGGTTCGGAAGGGCGGCGCGAAGAAGATGGGCGCGCGGAA
GCTGGGCGCGATGAAGATCGGCAGCGGAGGAGCGGCGGTCAAGCTGTCGG
GTTTCGATGACACCACCACCGCCCCGGCTGCGGTGGCGGCGGCAACACCT
GGAGCGGCGGGGGGCGGAGAAGACGCGGATCTCGCGCTCGCCCGGAAGCT
CCAGGAGGAGGAGGACCTTGCGGCGGCGGTGGCGGCCCCGTCATCCCGCC
TGGCGGCCGCCGCTTCGGCGGCTCTCGCGCCTCAACCGAGCAAGAGCAAG
GCCGCCAGGGCCGGCGAGGGCGGTGGAGGGTCGATTTACCGTTCCGCGAA
CGATTCGAGCTCTTCTTCTTCCTACGGGGGCGGAGCGGGGGGGGCTTACG
GATACCGGAATGGCGCCAGCGGCATCGGCTCGAGCAGCATCAGCTACGGC
AACGGGGGTGGGTACGGGGGTGGCGGCGGCGGCGGGTCTTCGTTCGATAA
AGACAAGTACAAGAACGTGAAGGGCATCGGGTCGGACATGCTCTTCGGGG
CCAAGGACGACGACCCGGACGAGCAGGCGCGCCGGGCGATGAAGAACCAG
GAGTACAGCCAGTCGGCCGCCATCAGCAGCGACATGTACTTCGACAGAGA
GGAGGGCGGCGGGGGCGGGGGGGGTTACGACGGCGGCGGCGAGGGGCGCA
TCGGGGACATGGCGGACCAGATCGCCGCCTCGGCGGCTGCAGAAATCCGG
GAGGTGGCACAAACCGCGGGAAAGCTGAAGGTGAGGATGAAGGAGAGTCT
TTTTTGATAATGTTTCTCGCGGGTTTTTTTTTTTGACACGGGGCGGTTGT
GCTGCTGATTTGTTCACGCTGGTGCTTCGCAGCGACTCTAGGAGGGTGTC
CGGCCGGAATTTTCCGACCGCTTTCGGGGAATCGGATCGTGGAACTTTCA
AGTTTTCTCAGGGTGCGAACTGCTGTTGTTTCGGAGGGTGATTTCGCGTT
TGTTGTGGTCCAGGGTGCTGTCGCCGCGGAGAGGAAACTGCTCAGGCTGC
TTTCCGGTTTCCTGTGTTCATCGGCCTACATAGATGGTCGCACCCGTTTG
CCTTGTGTGTGGGCATGCTGTGCTCCGTGGCCCGTTTTTTTCGCTGTGTA
CATACGGCAGTGGTGTGCACACGTGCCTCTCCGGGGCGTGCGGCGTGCAT
GGAATGTGTTACTCCCGTGTCTCCTCGTACTTGCAAGTTGGTTTTGGGAG
CTTGTCCATTCGAGTGTGATTCATCACTTGCACTGACGTAACGCGCTTTT
CCAGTCAATTCTTACCCCGGGACCGTGTGCGTGGAACAGAAGCAACGTTG
CCTTATTTGTCACGATCGCAATGATTTTCCACGACAGCTCGTCATGTTCT
CATCTAAATTGCGCCTTGCCTTCCCATCGAATCCTTGGGCGTCTATGTCT
GCATAAACCGAGTGTAGATATCCCCCAACTCTTCTCTCGCGGACCGCCCC
CCGTGCGCGTCTCTCGTTATTTTGCCGCTACTCTTCGCCCTACAGGACAT
GACGAAGGGTTTTTTGGACGACCTGCAGAACATGGTCGGTTGAAGCTGGA
CGCGGAAAAGCAAGCCGTGCGTGGGCGCGGCCGCCGTGTTTGCGCTGCCG
CTCGACACTCATCCTCTTGACAGGGCAAACGCCTCCTGTCGCCATTAACG
TGCGGTTGCGATGACGAGATTGTAGAGCGCGCTCGCACGCGGCGCGGGAA
TGCGTAAAACGAGGGTGGCGGCTCGTCGAAAAATGCACCCAACGGTCAGG
AGAACGGTTGGAATGAACCGATTGTGCCAGGAACGCCGTAGTCTAGTACA
GTTGTTGTCGGCCCATCGTTTTTTGCTCTTGCTTTCGCCGAAACGCTTCG
AGGAGAGGAAGAGCAAGCAGCTATCCGAGCGGCGTGTTGTCCCGTCTTTT
GGCGAGAAGAAAAATATTTCAGCGGCGTACGGGCAATTTTTCAAAGGGCG
CCAGCCCAGTCCACTCCTCACGGGGAGCTTTCGTGTTCTCGTATGCGTTC
TTGTCCCGCATAACGTTTTTGTGCCCCGTGTGTTTCGTGCGCGTTGGTGC
CGCAACAAACCTTTTGGGTTTTGTCCTTGTTTGTTTGGTTGGCCACGTTC
TGGCGACAGAATTCACTGCCTGCTGAACGCGTATCAAGAAGGACGAACGC
GAACGACTGCGTTGTTGGTTGAACTGAGCAGGTCAAATTGTGTTCGTCAT
AACGCACACCAGGGCTGCGCAGTTGTTGGTTGTCGTGAGAGCGACACGCC
CATTTCTTGGAAGGGTACGGAGAAAGTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1602:5673..10950+

>mRNA_Ecto-sp13_S_contig1602.4409.1 ID=mRNA_Ecto-sp13_S_contig1602.4409.1|Name=mRNA_Ecto-sp13_S_contig1602.4409.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1653bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1602:5673..10950+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGGACCAATACTTGCCGCCAGACGTGGTGAAGAGCACCTTTCGGCG
ATTGCGAAGCAAACCCGATAACAAGGTTTGTTTCGACTGTCCGACCCGGA
ATCCCACGTGGGCATCGGCGACGTACGGCATTTTCATCTGCTACGACTGC
TCCGCGGTGCACCGGAACATGGGGGTGCACGTGACCTTCGTCCGCAGCAT
CGAGCTGGACAAGTGGAAGCCGTCGGAGATGGAGGTCATGAAGCGCGGCG
GCAACGGCAACGCGCGTTCCTTCTTCCGCTCCCACGGGGTCACCGACATG
GAGAAGTCGGAGCAGAAGTACCACTCGCGCGCGGCGCAGATGTACCGCGC
CCACCTCAAGAAGGCGATGGCCGATCCCGGCGTCGTGACCCCCCCGCAGT
CGCCGAGAGAGGACCCGGTGGACAGCGTCGCCGACGGCCTGGACCGCCTC
ATGCGGGACGTGGACGGCAAGCCGGCGGCTTCGGCGCTAGCTAGGGGTTT
CACGAACGGCGGCGCAGCAGCCGAGAGCCTCGCAAACGGCGGCGCCCCCG
CGGCGGACGCGGCCGCAGCGGCGGCGAAGTTCGCACAAGCCTTCCCCTCG
TCGCAGCCCGCCGCCCCGACCAACGGGTCGGCAGCGGCAGGCAGGCATAC
CGCTGCTGATGTTCCCGCTCCGCCGGCGGCGCCGGCGCCGGCGCCGGTCA
AGCCGTACGAGCCGAAGCCCCGCGGGAGCCTGTCGGTGTCCCCGCCAACG
GCTCCAGCGGCGGCGGCGGGCGCGGTAGACGAGCCGAAGGCGGCGCCGGT
GGTGCGACTCAGCTCCTCCAAGTCGCCCCCGCCGCGGGTTCGGAAGGGCG
GCGCGAAGAAGATGGGCGCGCGGAAGCTGGGCGCGATGAAGATCGGCAGC
GGAGGAGCGGCGGTCAAGCTGTCGGGTTTCGATGACACCACCACCGCCCC
GGCTGCGGTGGCGGCGGCAACACCTGGAGCGGCGGGGGGCGGAGAAGACG
CGGATCTCGCGCTCGCCCGGAAGCTCCAGGAGGAGGAGGACCTTGCGGCG
GCGGTGGCGGCCCCGTCATCCCGCCTGGCGGCCGCCGCTTCGGCGGCTCT
CGCGCCTCAACCGAGCAAGAGCAAGGCCGCCAGGGCCGGCGAGGGCGGTG
GAGGGTCGATTTACCGTTCCGCGAACGATTCGAGCTCTTCTTCTTCCTAC
GGGGGCGGAGCGGGGGGGGCTTACGGATACCGGAATGGCGCCAGCGGCAT
CGGCTCGAGCAGCATCAGCTACGGCAACGGGGGTGGGTACGGGGGTGGCG
GCGGCGGCGGGTCTTCGTTCGATAAAGACAAGTACAAGAACGTGAAGGGC
ATCGGGTCGGACATGCTCTTCGGGGCCAAGGACGACGACCCGGACGAGCA
GGCGCGCCGGGCGATGAAGAACCAGGAGTACAGCCAGTCGGCCGCCATCA
GCAGCGACATGTACTTCGACAGAGAGGAGGGCGGCGGGGGCGGGGGGGGT
TACGACGGCGGCGGCGAGGGGCGCATCGGGGACATGGCGGACCAGATCGC
CGCCTCGGCGGCTGCAGAAATCCGGGAGGTGGCACAAACCGCGGGAAAGC
TGAAGGACATGACGAAGGGTTTTTTGGACGACCTGCAGAACATGGTCGGT
TGA
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