mRNA_Ecto-sp13_S_contig1602.4408.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1602.4408.1
Unique NamemRNA_Ecto-sp13_S_contig1602.4408.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1602.4408.1 vs. uniprot
Match: D8LT64_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LT64_ECTSI)

HSP 1 Score: 552 bits (1423), Expect = 2.880e-193
Identity = 308/335 (91.94%), Postives = 311/335 (92.84%), Query Frame = 3 
Query:   99 MAAAGRGWKCGVCNAKAGDLVCGACVTREAERRRAERAKRLGGLESVREAATVAAQERGVAVQHNARLQKEEADECRLKDHVREVAKRVAEERIKVASAAFALKHHRDLLAAAESHLSREQASAVEMNEALLVGLRRHAEDAARTLRQRRWRKVVQLFVLLPVEPSMPPRRERPPRGKKSWGRGDHSPGTAPSTAEGEEGRGVTRLPPPGGGVAKAGGSGAGEVVSGVSTLVDLPLPNNGDYSQVPADVLMASLALVARLVAAVASCLGVSLPHPLFPAASTRYATISVDSSPRERRVQYPLCPLSKLAEIGVMGAASAVCKTMGAFDTALDLLR 1103
            MAAAGRGWKCGVCNAKAGDLVCGACVTREAERRRAERAKRLG LESVREAATVAAQERGVAVQH+ARLQKEEADECRLKDHVREVAKRVAEERIKVASAAFALKHHRDLLAAAESHLSREQASAVEMNEALL+GLRRHAEDAARTLRQRRWRKVVQLFVLLPVEPSMPPRRE P RGKK+ G GDHSPGTAPSTAE EEGR VTRLP               EVVSGVSTLVDLPLPNNGDYSQVPADVLMASLALVARLVAAVASCLGVSLPHPLFPAASTRYATISVDSSPRER  QYPLCPLSKLAEIGVMGAASAVCKTMGAFDTALDLLR
Sbjct:    1 MAAAGRGWKCGVCNAKAGDLVCGACVTREAERRRAERAKRLGALESVREAATVAAQERGVAVQHDARLQKEEADECRLKDHVREVAKRVAEERIKVASAAFALKHHRDLLAAAESHLSREQASAVEMNEALLIGLRRHAEDAARTLRQRRWRKVVQLFVLLPVEPSMPPRREWPLRGKKNLGGGDHSPGTAPSTAESEEGREVTRLPXXXXXXXXXXXXXXXEVVSGVSTLVDLPLPNNGDYSQVPADVLMASLALVARLVAAVASCLGVSLPHPLFPAASTRYATISVDSSPRERSSQYPLCPLSKLAEIGVMGAASAVCKTMGAFDTALDLLR 335
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BLAST of mRNA_Ecto-sp13_S_contig1602.4408.1 vs. uniprot
Match: A0A4D9CP94_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CP94_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 3.850e-13
Identity = 83/263 (31.56%), Postives = 125/263 (47.53%), Query Frame = 3 
Query:  330 LKDHVREVAKRVAEERIKVASAAFALKHHRDLLAAAESHLSREQASAVEMNEALLVGLRRHAEDAARTLRQRRWRKVVQLFVLLPVEPSMPPRRERP----------------------PRGKKSWGRGDHSPGT------APSTAEGEEGRGVTR-----LPPPGGGVAKAGGSGAGEVVSGVSTLVDLPLPNNGDYSQV--PADVLMASLALVARLVAAVASCLGVSLPHPL-FPAASTRYATISVDSSPRERRVQYPLCP 1010
            LK  ++E A+RV + R+ VA   FAL+  R  +  A   L   +      +  +  GLR + E A   ++QR W +V++ FV+ P+E  +P     P                      P    S   G  SP T      A S ++   G+G        +PPP      +  S   + ++GVST+V LPLPN G+Y ++  P +V   +L LVARL  ++A  LG+ LPHPL FPA  + YA I+ D+   +RR ++ L P
Sbjct:   80 LKTRLQETAERVRDLRLAVARKTFALEERRKAVDVARQRLEEVKRWQGSQSTPVQQGLRWYKEQAMEVVQQRVWTRVLEHFVVFPIEADIPVVSRPPLLLPSRFXXXXXXXXXLLPVHSPXFHSSPSPGSRSPSTDVPTLPASSHSQHVPGKGTQEQAPAFIPPP---CPPSRASAGPKPLTGVSTIVGLPLPNAGNYRELGLPDEVCETALYLVARLTWSLAETLGMRLPHPLRFPAGKS-YALIAEDA---QRRTEFALSP 335
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BLAST of mRNA_Ecto-sp13_S_contig1602.4408.1 vs. uniprot
Match: A0A7S3GZ98_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GZ98_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 8.650e-7
Identity = 37/92 (40.22%), Postives = 52/92 (56.52%), Query Frame = 3 
Query:  771 VSGVSTLVDLPLPNNGDYSQVPADVLMASLALVARLVAAVASCLGVSLPHPLFPAASTRYATISVDSSPRER----RVQYPLCPLSKLAEIG 1034
            VSG S+++ +PLPN+GDYS  P DV+  + A +A LV A+++ L + LPHPL P  ST    IS       R     + Y LCP  ++   G
Sbjct:   36 VSGCSSILSVPLPNSGDYSGTPVDVVAMAFAHIALLVDALSATLNIPLPHPLLPFQSTE-CRISAQHDLWARAQIPNLSYSLCPAKQINHEG 126
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1602.4408.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LT64_ECTSI2.880e-19391.94Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A4D9CP94_9STRA3.850e-1331.56Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S3GZ98_9STRA8.650e-740.22Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1602contigEcto-sp13_S_contig1602:423..4438 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score559.3
Seed ortholog evalue1.2e-156
Seed eggNOG ortholog2880.D8LT64
Model size1103
Hectar predicted targeting categoryother localisation
Exons5
EggNOG OGs2E6RT@1,2SDEH@2759
Ec32 ortholog descriptionUV radiation resistance protein/autophagy-related protein 14
Ec32 orthologEc-12_005410.1
Cds size1005
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1602.4408.1prot_Ecto-sp13_S_contig1602.4408.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1602 423..4340 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462846.3950236-CDS-Ecto-sp13_S_contig1602:422..5341681462846.3950236-CDS-Ecto-sp13_S_contig1602:422..534Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1602 423..534 -
1681462846.4043736-CDS-Ecto-sp13_S_contig1602:1391..15541681462846.4043736-CDS-Ecto-sp13_S_contig1602:1391..1554Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1602 1392..1554 -
1681462846.4123816-CDS-Ecto-sp13_S_contig1602:2615..30711681462846.4123816-CDS-Ecto-sp13_S_contig1602:2615..3071Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1602 2616..3071 -
1681462846.4203832-CDS-Ecto-sp13_S_contig1602:3666..37721681462846.4203832-CDS-Ecto-sp13_S_contig1602:3666..3772Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1602 3667..3772 -
1681462846.4308188-CDS-Ecto-sp13_S_contig1602:4172..43401681462846.4308188-CDS-Ecto-sp13_S_contig1602:4172..4340Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1602 4173..4340 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462846.438965-UTR-Ecto-sp13_S_contig1602:4340..44381681462846.438965-UTR-Ecto-sp13_S_contig1602:4340..4438Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1602 4341..4438 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1602.4408.1

>prot_Ecto-sp13_S_contig1602.4408.1 ID=prot_Ecto-sp13_S_contig1602.4408.1|Name=mRNA_Ecto-sp13_S_contig1602.4408.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=335bp
MAAAGRGWKCGVCNAKAGDLVCGACVTREAERRRAERAKRLGGLESVREA
ATVAAQERGVAVQHNARLQKEEADECRLKDHVREVAKRVAEERIKVASAA
FALKHHRDLLAAAESHLSREQASAVEMNEALLVGLRRHAEDAARTLRQRR
WRKVVQLFVLLPVEPSMPPRRERPPRGKKSWGRGDHSPGTAPSTAEGEEG
RGVTRLPPPGGGVAKAGGSGAGEVVSGVSTLVDLPLPNNGDYSQVPADVL
MASLALVARLVAAVASCLGVSLPHPLFPAASTRYATISVDSSPRERRVQY
PLCPLSKLAEIGVMGAASAVCKTMGAFDTALDLLR
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mRNA from alignment at Ecto-sp13_S_contig1602:423..4438-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1602.4408.1 ID=mRNA_Ecto-sp13_S_contig1602.4408.1|Name=mRNA_Ecto-sp13_S_contig1602.4408.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4016bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1602:423..4438- (Ectocarpus species13 EcNAP12_S_4_19m)
AGACCCGAAGCCATCGCCCCGACGTGGGCTAGTCAGTCATAGAAAAGCGC
CACAGCAACAGCACCTCACCAGTCGGCGAGCAGCCGCGAAGCGGAGCGAT
GGCGGCAGCTGGGCGGGGGTGGAAGTGCGGAGTCTGCAACGCCAAGGCGG
GGGACCTGGTGTGCGGCGCGTGCGTGACGCGGGAGGCGGAGCGGCGGAGA
GCGGAGAGGGCCAAGCGGTTGGGGGGGCTGGAGAGCGTTCGCGAGGCGGC
CACTGTCGCGGCGCAGGTGTGTGAAAAAATGACGCGCGTAAGTTCCGTGT
GTAATGCGATGCTCTTTGGTGGGCCTGCATGCACGCACGCACACCCGCGC
CCCTTTGAAAAGTGTCAACTGCTGTGTTACCAGTCGCGGTGTTCATTGTC
CTGGGGCAACTTGGCACGACGGCGGCAAGTTGGGGTGGGAGTTGCAGCCC
GAGTATTGGTTGCAGCCGAGTTGGCGTGTCCTGCAAAGATGCGGAGTGCG
TGTGTACGCGTGTTTGCAACCGAGAGGGGTCTGCTGTGCAGCGTGACATG
ATATAAAACCTCGTTCGAAGGAAAAAACACCGACATGCTCTACCCTCTCA
CGCAAGTCTGAGACGGTGTTGAAAGCGTTTGTTCTTTCGTGTGACGCTGC
GCTTGCTGGCACGTAGGAACGTGGGGTCGCCGTTCAGCACAACGCGCGGC
TGCAGAAGGAGGAGGCCGATGAGTGCCGTCTGAAGGATCATGTCCGCGAG
GTTGCCAAGAGGGTCGCGGAAGGTGAGAGTAAGGCAGTACGGGCTGACGT
ATCGCGAAGGCTACGTGTTTGCTCGTGCAGCGGCGGAGTTGAGCTCTGGA
GGAAGGAGAAAGTTCGGGGGGTGTGGGTGGGTTCGTTGCCTATCGATCTT
GCGACGGTGCCAAGGCAAGAGGGTTCTTACATACCCCAATGTGTACATTA
TCTCCACGCTACGTTTTTTTTTTTGTGGCAATAGTCGAGGCGGCGATAAC
ACCACTCTCCTGATGATGGCTTGTGTTTGCCGATGTCAGATACCTAAAAG
TTGTTGCGATGTAAATCCCTGGAATTATTTGCGGAGAGTTGTCCGGTCGC
TTCGCCTTTGCGGGCCCCTTCGCTCCGCGCCCTGCCGCCCCCGTTTGGTA
CACATTCTGTTGGTCTCACTTTGCCGCTCGAAAAAATAATGTATGGATCC
AATCTCTTCTAAACCTTTATCCTCGTCACACGGGGCCATGCGGTGCCTAA
GTTTACCCCCGATCATGTCTCCTGGGATGTTCACGACGACGACCACCGGT
CCTTGCGCCCGCCGCGTGTTTTGCCTCGAAACGATGGCGATAACGGCGGC
GGTGGTGGCGGCTGCAGAGCGAATCAAGGTAGCGAGCGCGGCGTTCGCCC
TGAAGCACCACCGCGACCTCCTCGCCGCGGCGGAGTCGCACTTGTCCCGC
GAGCAGGCCTCGGCGGTGGAGATGAACGAGGCGCTCCTCGTCGGCCTGAG
GCGGCACGCCGAGGACGCCGCGCGGACGCTCCGCCAGAGGCGCTGGCGCA
AGGTGGTGCAGCTCTTCGTGCTCCTCCCCGTGGAGCCGTCGATGCCGCCG
CGCCGAGAACGACCGCCGAGAGGCAAGAAGAGCTGGGGGCGAGGGGACCA
CTCTCCGGGGACTGCGCCGTCGACAGCGGAGGGCGAGGAAGGCAGGGGGG
TAACTAGGTTGCCGCCGCCGGGCGGCGGGGTGGCGAAGGCCGGGGGAAGC
GGTGCAGGGGAGGTGGTCAGCGGCGTGAGTACCCTGGTGGACCTCCCTTT
GCCGAACAACGGGGACTACAGCCGTGAGTGCTTGGGGCGGATGAGGATTT
GTTTATTTCGTGTGTCTAGTTTGTTAGCGTCGACCCCGTTGCACGCGGGC
CGATGAAAAAATTCACCGGTCGTGTGTAGTGCGACGGGGCAAACTACCAG
CGGTGTGCGGTGCCGGAGTGCTTTTGTCCACACGAGTGACCCTGTCAGCC
AGAGGGGCTGGGTTGTTCGGGGTGTAGATCACCGTTAACTGGAGCTCGTA
TTTTCACACAGCAGCAGCACCTCTTCATCCACTGGCAATGGCTGCACTTT
GTCGACCGCGCTTCATCTGAGAAAAGTACGGCACAGGTAGGTGTTGCTCC
TCTACATGAGGAAAGTAAAACTGAGAGTCCCACCACCAGAATTCACGCCT
TTTGTTTTAGCGGGACTAATGTGTTTTAGCCCCTTCTCCCCAGTGCAGGC
CCGGTTGAGCCGAGCACGGCCATGGCCTCGTGCTATTTCCGCAGGCATCG
GGCTTGCCATGAAAGTGAAAGAGGCATGACAAGAAGTCGTTTTTTTACTC
TCTCCTCCGCAAGCTGTTGATACCCCCGTGAGTAGTCCTTGAACGGGAAA
ATAGCGGAGCAACCACGACTGACTGGAGTCGGTTCCCGCTATTACACGCG
ACTTTTTCAACTCTCGGCAGACAACTTTCGCGCCAACTCTTCGCGTAGAT
AGAGTACAACCACCACAGGGAAAAAACGACCATAGACAAGGGGAAACTCT
TTGGTAGAAAAAGGGGTCGACACCTGAGACGGCACGAGCGCGAAGAAATG
AGAAGGATCCTCCGCCTTGAGAGCCCTATCCCTAGCGCGGCATCCATCAC
CGTGCTGCCGGCAGACGCCCCAGACGCGTGGCACTACCCCCGCCCCCTCG
CGCGCGCTCTCCCACGTGCTCACGTCTTTTCTCTTATGCTTTCTGCGCGC
ACTGGGGGCCCGAGTGTTGTTTTTGTGTCGTTCTACGTATTGGCGCCTCT
TTTGGTTTCTTATTTTGCTGTTTTGTTTTTGTCGTTCGTGCCGTCGGTCC
TCTGGGTCGTCTCCTCCCCCTCTCTTTTTCGCAGAGGTGCCCGCGGACGT
GTTGATGGCCTCCCTGGCGTTGGTGGCGCGCCTCGTGGCCGCTGTCGCCT
CCTGCCTCGGCGTGTCTCTACCGCACCCGCTCTTCCCGGCGGCGTCGACA
CGATACGCGACAATCTCGGTCGACTCGTCGCCGAGGGAAAGGCGTGTGTG
TGTGTGTGTGTTTTTTTATTTGTTTATTGTTAGCATCGACCGCACTTACA
GGCTGACCAAATGAAAAGACGTCAGTCTCAGCGGGTAAAGTCAAGGTCTC
TGGAAAGGGGGCAAGATCGAAAAGAAATGTATGTACGCGGGCTTTTGGCT
AGTCCCAAGTGTTGAAACGGCGAAGAAGGGGTTCAAAAAGCGTTTCATGA
CTATTTTGTTTATCGTACGCGCGTGCGTCGCGGCCGTACCACTGCCGTCG
TCGTCGTCGCGGCCGGGGGGACATGGTTTCATGCTTCGCTCTGGTCGCAG
CAGCACAGCGAGTTGTGACACTACGCGAAGGGGTTGCAAATGACGCTCTC
CCTCGTGCTCTTTTTTGTCAAGTTGGAGCAATACAATATGTATTACAAGT
AATAGTGGTCCTGGTATCATGCCGTTGAAATTATCTGGCACTGATGGAAT
GTTCAAGTTGTTTCATACTCTGAAGTAATGCCGGTTGCCCGCTATGATGC
CGTTGAAGGTGGTTGGATCGCACCGGCATTGTACCAGGACCACTACCGTA
GTGGAATCCGTCTATAAGCGGTCTTGCGCCTCCATATGTGGGGTGCCGAA
CTGGGTTTATACGCCGCAGCTCGTGGTACTGAATACCGTAGAGGCGGACA
CGAGATTTTGGGCGCTTGCTGCCCGGCTTCCAGATAGCAAGACAAGTCAA
GCTAGCCGAAAGCTGCTCCGACCCGAAGACGGAGGTCCAAGCAGCACCTG
AACCCCACCCCTTTTGTTCCGGCCCCGTGCGCCCCCCCGCCGCCCCCCCT
ACCCATGCGCGCGCCTTGTCCTTTCCTCCTGGAATGCCATGCGAGAAGAT
CTAGCCAGTACCCCTTGTGCCCTCTGTCCAAGCTGGCGGAGATAGGGGTC
ATGGGAGCAGCTTCTGCGGTGTGCAAAACCATGGGTGCTTTCGACACGGC
GCTGGATCTCCTTCGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1602:423..4438-

>mRNA_Ecto-sp13_S_contig1602.4408.1 ID=mRNA_Ecto-sp13_S_contig1602.4408.1|Name=mRNA_Ecto-sp13_S_contig1602.4408.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1005bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1602:423..4438- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGGCAGCTGGGCGGGGGTGGAAGTGCGGAGTCTGCAACGCCAAGGC
GGGGGACCTGGTGTGCGGCGCGTGCGTGACGCGGGAGGCGGAGCGGCGGA
GAGCGGAGAGGGCCAAGCGGTTGGGGGGGCTGGAGAGCGTTCGCGAGGCG
GCCACTGTCGCGGCGCAGGAACGTGGGGTCGCCGTTCAGCACAACGCGCG
GCTGCAGAAGGAGGAGGCCGATGAGTGCCGTCTGAAGGATCATGTCCGCG
AGGTTGCCAAGAGGGTCGCGGAAGAGCGAATCAAGGTAGCGAGCGCGGCG
TTCGCCCTGAAGCACCACCGCGACCTCCTCGCCGCGGCGGAGTCGCACTT
GTCCCGCGAGCAGGCCTCGGCGGTGGAGATGAACGAGGCGCTCCTCGTCG
GCCTGAGGCGGCACGCCGAGGACGCCGCGCGGACGCTCCGCCAGAGGCGC
TGGCGCAAGGTGGTGCAGCTCTTCGTGCTCCTCCCCGTGGAGCCGTCGAT
GCCGCCGCGCCGAGAACGACCGCCGAGAGGCAAGAAGAGCTGGGGGCGAG
GGGACCACTCTCCGGGGACTGCGCCGTCGACAGCGGAGGGCGAGGAAGGC
AGGGGGGTAACTAGGTTGCCGCCGCCGGGCGGCGGGGTGGCGAAGGCCGG
GGGAAGCGGTGCAGGGGAGGTGGTCAGCGGCGTGAGTACCCTGGTGGACC
TCCCTTTGCCGAACAACGGGGACTACAGCCAGGTGCCCGCGGACGTGTTG
ATGGCCTCCCTGGCGTTGGTGGCGCGCCTCGTGGCCGCTGTCGCCTCCTG
CCTCGGCGTGTCTCTACCGCACCCGCTCTTCCCGGCGGCGTCGACACGAT
ACGCGACAATCTCGGTCGACTCGTCGCCGAGGGAAAGGCGTGTCCAGTAC
CCCTTGTGCCCTCTGTCCAAGCTGGCGGAGATAGGGGTCATGGGAGCAGC
TTCTGCGGTGTGCAAAACCATGGGTGCTTTCGACACGGCGCTGGATCTCC
TTCGA
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