mRNA_Ecto-sp13_S_contig16015.4406.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16015.4406.1
Unique NamemRNA_Ecto-sp13_S_contig16015.4406.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16015.4406.1 vs. uniprot
Match: D7G703_ECTSI (Heat shock protein 40 like protein/ DnaJ domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G703_ECTSI)

HSP 1 Score: 209 bits (532), Expect = 1.590e-64
Identity = 121/165 (73.33%), Postives = 126/165 (76.36%), Query Frame = 1 
Query:    1 SRQYRRLALILHPDKNRHPDAEAAFKKLTAAFEKLYDPAQQALCRAEAEQRNRGRPRKHQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAEAPRWCREGEYVPEAERKREEGLDTEKTRPMDEFLEEFEQREKAFKEEVARAKEASAERKRARAEARSVQEQE 495
            ++QYRRLALILHPDKNRHPDAEAAFKKLTAAFEKL+DPAQQALCRAEAEQRNRGRPRKH+                              PAEAPRWCREGEYVPEAERKREEG DT KTRPMDEFLEEFEQREKAFKEEVARAKE +AER      ARSVQEQE
Sbjct:    6 AKQYRRLALILHPDKNRHPDAEAAFKKLTAAFEKLHDPAQQALCRAEAEQRNRGRPRKHRGDSSSGGRPSESRHEYGGGETSSARSGGNGPAEAPRWCREGEYVPEAERKREEGPDTGKTRPMDEFLEEFEQREKAFKEEVARAKETNAERXXXXXXARSVQEQE 170
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BLAST of mRNA_Ecto-sp13_S_contig16015.4406.1 vs. uniprot
Match: A0A3M6TFE1_POCDA (J domain-containing protein n=2 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6TFE1_POCDA)

HSP 1 Score: 58.5 bits (140), Expect = 5.990e-7
Identity = 30/57 (52.63%), Postives = 39/57 (68.42%), Query Frame = 1 
Query:    4 RQYRRLALILHPDKNRHPDAEAAFKKLTAAFEKLYDPAQQALCRAEAEQRNRGRPRK 174
            +QYR+LA+++HPDKN HP A+ AFK L  AF+ L DP ++A   AEA  R R   RK
Sbjct:  732 KQYRKLAVLIHPDKNTHPQADEAFKTLANAFDILSDPEKRANYDAEAAWRTRAEERK 788
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BLAST of mRNA_Ecto-sp13_S_contig16015.4406.1 vs. uniprot
Match: A0A836CJ30_9STRA (Heat shock protein 40 like protein/ DnaJ domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ30_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 8.450e-7
Identity = 26/40 (65.00%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:    7 QYRRLALILHPDKNRHPDAEAAFKKLTAAFEKLYDPAQQA 126
            QYRRLA ++HPDKN HP AEAAF +L  AF+ L+DP  QA
Sbjct:   46 QYRRLARLVHPDKNAHPKAEAAFHRLAKAFDDLHDPESQA 85
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BLAST of mRNA_Ecto-sp13_S_contig16015.4406.1 vs. uniprot
Match: A0A022QL91_ERYGU (J domain-containing protein (Fragment) n=2 Tax=Erythranthe guttata TaxID=4155 RepID=A0A022QL91_ERYGU)

HSP 1 Score: 56.2 bits (134), Expect = 9.170e-7
Identity = 27/42 (64.29%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:    4 RQYRRLALILHPDKNRHPDAEAAFKKLTAAFEKLYDPAQQAL 129
            +QYRRLAL LHPDKNR P AEAAFK ++ A+E L DP  ++L
Sbjct:   89 KQYRRLALSLHPDKNRFPGAEAAFKLISQAYEVLSDPKSKSL 130
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BLAST of mRNA_Ecto-sp13_S_contig16015.4406.1 vs. uniprot
Match: A0A4S8JKJ1_MUSBA (J domain-containing protein n=3 Tax=Musaceae TaxID=4637 RepID=A0A4S8JKJ1_MUSBA)

HSP 1 Score: 56.6 bits (135), Expect = 1.030e-6
Identity = 28/38 (73.68%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:    4 RQYRRLALILHPDKNRHPDAEAAFKKLTAAFEKLYDPA 117
            RQYRRLAL LHPDKNRHP AEAAFK ++ A+E L D A
Sbjct:   37 RQYRRLALQLHPDKNRHPKAEAAFKVVSEAYECLSDEA 74
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BLAST of mRNA_Ecto-sp13_S_contig16015.4406.1 vs. uniprot
Match: A0A2G9HZP7_9LAMI (J domain-containing protein n=1 Tax=Handroanthus impetiginosus TaxID=429701 RepID=A0A2G9HZP7_9LAMI)

HSP 1 Score: 55.5 bits (132), Expect = 1.850e-6
Identity = 28/42 (66.67%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:    4 RQYRRLALILHPDKNRHPDAEAAFKKLTAAFEKLYDPAQQAL 129
            +QYRRLALILHPDKNR P AEAAFK +  A   L DPA+++L
Sbjct:   85 KQYRRLALILHPDKNRFPGAEAAFKLICEANAVLSDPAKKSL 126
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BLAST of mRNA_Ecto-sp13_S_contig16015.4406.1 vs. uniprot
Match: A0A804IG57_MUSAM ((wild Malaysian banana) hypothetical protein n=1 Tax=Musa acuminata subsp. malaccensis TaxID=214687 RepID=A0A804IG57_MUSAM)

HSP 1 Score: 55.5 bits (132), Expect = 3.280e-6
Identity = 27/36 (75.00%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:    4 RQYRRLALILHPDKNRHPDAEAAFKKLTAAFEKLYD 111
            RQYRRLAL LHPDKNRHP AEAAFK ++ A+E L D
Sbjct:   57 RQYRRLALQLHPDKNRHPKAEAAFKVVSEAYECLSD 92
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BLAST of mRNA_Ecto-sp13_S_contig16015.4406.1 vs. uniprot
Match: F0XXS8_AURAN (J domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XXS8_AURAN)

HSP 1 Score: 51.6 bits (122), Expect = 5.260e-6
Identity = 24/42 (57.14%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:    4 RQYRRLALILHPDKNRHPDAEAAFKKLTAAFEKLYDPAQQAL 129
            ++YR+LAL LHPDKNR P+AE  F++L AA+E + DP Q+ L
Sbjct:   21 KRYRQLALKLHPDKNRDPNAEEQFRELHAAYEVINDPKQKEL 62
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BLAST of mRNA_Ecto-sp13_S_contig16015.4406.1 vs. uniprot
Match: A0A2G9HZM3_9LAMI (J domain-containing protein n=1 Tax=Handroanthus impetiginosus TaxID=429701 RepID=A0A2G9HZM3_9LAMI)

HSP 1 Score: 55.5 bits (132), Expect = 6.790e-6
Identity = 28/42 (66.67%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:    4 RQYRRLALILHPDKNRHPDAEAAFKKLTAAFEKLYDPAQQAL 129
            +QYRRLALILHPDKNR P AEAAFK +  A   L DPA+++L
Sbjct:   85 KQYRRLALILHPDKNRFPGAEAAFKLICEANAVLSDPAKKSL 126
[Close]
BLAST of mRNA_Ecto-sp13_S_contig16015.4406.1 vs. uniprot
Match: A0A8J5LI82_ZINOF (J domain-containing protein n=2 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5LI82_ZINOF)

HSP 1 Score: 54.3 bits (129), Expect = 8.610e-6
Identity = 26/36 (72.22%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:    4 RQYRRLALILHPDKNRHPDAEAAFKKLTAAFEKLYD 111
            +QYRRLAL LHPDKNRHP AEAAFK ++ A+E L D
Sbjct:   56 KQYRRLALQLHPDKNRHPKAEAAFKVVSEAYECLSD 91
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16015.4406.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G703_ECTSI1.590e-6473.33Heat shock protein 40 like protein/ DnaJ domain co... [more]
A0A3M6TFE1_POCDA5.990e-752.63J domain-containing protein n=2 Tax=Pocillopora da... [more]
A0A836CJ30_9STRA8.450e-765.00Heat shock protein 40 like protein/ DnaJ domain-co... [more]
A0A022QL91_ERYGU9.170e-764.29J domain-containing protein (Fragment) n=2 Tax=Ery... [more]
A0A4S8JKJ1_MUSBA1.030e-673.68J domain-containing protein n=3 Tax=Musaceae TaxID... [more]
A0A2G9HZP7_9LAMI1.850e-666.67J domain-containing protein n=1 Tax=Handroanthus i... [more]
A0A804IG57_MUSAM3.280e-675.00(wild Malaysian banana) hypothetical protein n=1 T... [more]
F0XXS8_AURAN5.260e-657.14J domain-containing protein (Fragment) n=1 Tax=Aur... [more]
A0A2G9HZM3_9LAMI6.790e-666.67J domain-containing protein n=1 Tax=Handroanthus i... [more]
A0A8J5LI82_ZINOF8.610e-672.22J domain-containing protein n=2 Tax=Zingiber offic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16015contigEcto-sp13_S_contig16015:3..1315 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size495
Hectar predicted targeting categoryother localisation
Exons3
Cds size495
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462846.351906-CDS-Ecto-sp13_S_contig16015:2..411681462846.351906-CDS-Ecto-sp13_S_contig16015:2..41Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16015 3..41 -
1681462846.3605785-CDS-Ecto-sp13_S_contig16015:416..8141681462846.3605785-CDS-Ecto-sp13_S_contig16015:416..814Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16015 417..814 -
1681462846.368704-CDS-Ecto-sp13_S_contig16015:1257..13151681462846.368704-CDS-Ecto-sp13_S_contig16015:1257..1315Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16015 1258..1315 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16015.4406.1prot_Ecto-sp13_S_contig16015.4406.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16015 3..1315 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16015.4406.1

>prot_Ecto-sp13_S_contig16015.4406.1 ID=prot_Ecto-sp13_S_contig16015.4406.1|Name=mRNA_Ecto-sp13_S_contig16015.4406.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=165bp
SRQYRRLALILHPDKNRHPDAEAAFKKLTAAFEKLYDPAQQALCRAEAEQ
RNRGRPRKHQADSRSGGRPSESRNEYGGGESSSARSGEHGPAEAPRWCRE
GEYVPEAERKREEGLDTEKTRPMDEFLEEFEQREKAFKEEVARAKEASAE
RKRARAEARSVQEQE
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mRNA from alignment at Ecto-sp13_S_contig16015:3..1315-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16015.4406.1 ID=mRNA_Ecto-sp13_S_contig16015.4406.1|Name=mRNA_Ecto-sp13_S_contig16015.4406.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1313bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16015:3..1315- (Ectocarpus species13 EcNAP12_S_4_19m)
TCCAGGCAGTACCGGCGCTTGGCGCTGATTCTGCACCCGGACAAGAACAG
ACATCCAGGTGAGTTTCACGTGCAGGTCTTTTAGGTCTAAGATCTGTACT
GCTGTCAAGAAGTGTGTTTGCACGAAGCAGGTTTGACCAGTTAGGTCTAT
AACTTGTAGTGTTACAAAGATGTGCTTACACACGGCAGGTTTCGAGGACC
CACCTTGCTTCCGTCTGTGCATCCCTTACCTTGTCATTGTGTTGGGTCGA
CAAACTTCAAACACCTCAACAATGGGAATGAAGTTTTCAAGGGTTGCATG
TCTTGCTATTTACTTTCCGCGCTGCGCAGCCGCAGAGGCTCCACAAGAGC
TGCCTTTACTTTTTCACCCCCCCCCTGCATACGGCCGTGTTACCTCGTCG
TCATCGTCGTCATCGTTTTCGCTGATGTGCGGCTGGCGGTGCTGCTGCTG
CTGCGCGATTGTTTGTCTTCTCCCCTGCCCACCCATCGTCCGCGAAAACA
GATGCCGAGGCAGCCTTCAAGAAGCTAACTGCGGCTTTCGAGAAACTCTA
CGACCCTGCCCAGCAAGCCTTGTGTAGGGCGGAGGCGGAACAAAGAAACC
GCGGCAGACCTCGAAAACACCAAGCGGACTCGCGCTCTGGCGGTCGGCCT
AGCGAGAGCAGGAATGAGTACGGCGGAGGGGAGAGTTCCAGCGCGCGTTC
TGGAGAACACGGGCCGGCAGAGGCACCTCGGTGGTGTCGGGAGGGCGAGT
ACGTCCCAGAAGCAGAGCGAAAACGAGAAGAGGGGCTGGACACGGAAAAG
ACACGACCAATGGACGAGTTCTTGGAGGAGTTCGAGCAACGGGAGAAAGC
CTTCAAGGAGGAAGTGGCCCGAGCCAAAGAAGCCAGCGCCGAGAGGAAGG
TGAGGTTACACCTGACAGCGCGCGTTTGCCTTGTTGGTTGCGACGGTGGC
ACGCTTGTGCGTGCGTCATCAAGGGCCGAGGTTTTGACTTTGTCTGCCTC
TGGTGGATTCTCTCTTGTGTGGTTCCTGGACTACCTGTTCGTGGGGCATC
CAACTCACCAGCCATGAGTAATTTTCATGGCAATTCGCCAGAAAAAGCCA
ATTTCAACCGTCAACAGCAAGGTGTCCGCAAGGCCATGTTGTCCTGCCAA
GGCGCGCATCGGACATCATATGCTAATCAATCTACTCTCCAGTAGAACAC
CGACGAGGCATTCCTACTCCACCTTCCTTTACTTGCCCCTCGCGTCGACG
CTGCTGTCGTCCTTACCTCTGCAGCGTGCCCGGGCGGAGGCTCGCTCAGT
GCAGGAGCAGGAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16015:3..1315-

>mRNA_Ecto-sp13_S_contig16015.4406.1 ID=mRNA_Ecto-sp13_S_contig16015.4406.1|Name=mRNA_Ecto-sp13_S_contig16015.4406.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=495bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16015:3..1315- (Ectocarpus species13 EcNAP12_S_4_19m)
TCCAGGCAGTACCGGCGCTTGGCGCTGATTCTGCACCCGGACAAGAACAG
ACATCCAGATGCCGAGGCAGCCTTCAAGAAGCTAACTGCGGCTTTCGAGA
AACTCTACGACCCTGCCCAGCAAGCCTTGTGTAGGGCGGAGGCGGAACAA
AGAAACCGCGGCAGACCTCGAAAACACCAAGCGGACTCGCGCTCTGGCGG
TCGGCCTAGCGAGAGCAGGAATGAGTACGGCGGAGGGGAGAGTTCCAGCG
CGCGTTCTGGAGAACACGGGCCGGCAGAGGCACCTCGGTGGTGTCGGGAG
GGCGAGTACGTCCCAGAAGCAGAGCGAAAACGAGAAGAGGGGCTGGACAC
GGAAAAGACACGACCAATGGACGAGTTCTTGGAGGAGTTCGAGCAACGGG
AGAAAGCCTTCAAGGAGGAAGTGGCCCGAGCCAAAGAAGCCAGCGCCGAG
AGGAAGCGTGCCCGGGCGGAGGCTCGCTCAGTGCAGGAGCAGGAA
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