mRNA_Ecto-sp13_S_contig16015.4407.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16015.4407.1
Unique NamemRNA_Ecto-sp13_S_contig16015.4407.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16015.4407.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16015contigEcto-sp13_S_contig16015:2022..4010 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size254
Hectar predicted targeting categoryother localisation
Exons2
Cds size216
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462846.3061023-UTR-Ecto-sp13_S_contig16015:2021..20591681462846.3061023-UTR-Ecto-sp13_S_contig16015:2021..2059Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16015 2022..2059 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462846.3154726-CDS-Ecto-sp13_S_contig16015:2059..22161681462846.3154726-CDS-Ecto-sp13_S_contig16015:2059..2216Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16015 2060..2216 -
1681462846.3243165-CDS-Ecto-sp13_S_contig16015:3951..40101681462846.3243165-CDS-Ecto-sp13_S_contig16015:3951..4010Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16015 3952..4010 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16015.4407.1prot_Ecto-sp13_S_contig16015.4407.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16015 2060..4010 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16015.4407.1

>prot_Ecto-sp13_S_contig16015.4407.1 ID=prot_Ecto-sp13_S_contig16015.4407.1|Name=mRNA_Ecto-sp13_S_contig16015.4407.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=72bp
GPFQVLRLIPEVYEPVEIKRSLGGKLPHAVAVRERDYVLRAFAPRQKDNH
RTQCNNREFGSASFRPPWVCT*
back to top

mRNA from alignment at Ecto-sp13_S_contig16015:2022..4010-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16015.4407.1 ID=mRNA_Ecto-sp13_S_contig16015.4407.1|Name=mRNA_Ecto-sp13_S_contig16015.4407.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1989bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16015:2022..4010- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCCCTTTTCAAGTCCTGAGGCTGATCCCGGAGGTGTACGAGCCAGTTGA
GATCAAGCGGTAGGTGGGTCGCGTTTCTTTCGTGTAGCCTAGCTACAGTA
GGCTTCGGTCCGTCTGCTTCAGGGTAGAGAAACACCGCGATCTAGAGGTG
GAAAGCGCGCAGTCGTGAGTATATGCAAGCATACATAGGTAAGGAGATAA
CTGCTCAGGAGCGCCGACAAGGGAGAGCAAACCCCAGCGTACACCGGCCT
CACTATTGTCCCCCGTGTGTGCTGAGACCTCTTGTGCATACCCGGGGCGG
TAGAACCTCACGGTGGCACGGAGCGAGAGGTTTTCAACCCAATATCACAC
GTACATATTCGCAAAACTAACAACGACAAAATTGACAAGAGTCGTGACTC
CGAGTCCGTATGTTTGACGCAGACCGCCCTGCTGCGGGAGCCGGTAAACG
AGACCTGCCAGTCTCGTTTTATATACGTAACCCCGGGGACAAAACACAGC
CATTCCCGGGTCTCGTTACATGATCGAGACCCCGGGGACAGGACACAGCC
GTCCCCGGGGTTCTTACGCCAGACTTACAGCTATAGGTAGCAGCTGGGCG
GGACGGGGCGCCAAGACACGCACTTCGCTGTGTTTTGGCTGTGTTTTGGA
GCGTTGAGGACAGTAGCTCAACTCCTCAACTACTGTAGGTAGGGGAGCCT
TTGATAGCAGTGTTGGACTGTGCCCGAGGGCAAGACGGCAAGACCGTGCC
GCCTGCTGCTCGGGAGTCTTCCAAAATAGGCTATGCATGCGATGTCTCAA
AAGCCAACGGCCGGTTGTTGTGTCCAGCGAGACAGCAGTCCAACAGTATC
ACCATGTATGTGCACCACACGGACGGAAGCAGACGAAATATCAGCGCACA
CACGAAGCTAAGCATCAGCAGGCGGTGCCAGCAGTCCAAGCATAATCCAT
CCTCAGGCTTGCTTTATGCATACAACTCTACATAAATACGTTTGGACTGC
TGTCTCGCTGGACACAACAACCGGCCGTTGGCTTTTGAGACATCGCATGC
ATAGCCTATTTTGGAAGACTCCCGAGCAGCAGGCGGCACGGTCTTGCCGT
CTTGCCCTCGGGCACAGTCCAACACTGCTATCAAAGGCTCCCCTACCTAC
AGTAGTTGAGGAGTTGAGCTACTGTCCTCAACGCTCCAAAACACAGCCAA
AACACAACGAAGTGCGTGTCTTGGCGCCCCGTCCCGCCCAGCTGCTGCCT
ATAGCTGTAAGTCTGGCGTAAAAACCCCGGGGATGGCTGTGTCCTGTCCC
CGGGGTCTCGATTATGTAACGAGACCCGGGAATGGCTGTGTTTTGTCCCC
GGGGTTACGTATATAAAACGAGACTGGCAGGTCTCGTTTACCGCCTCCCG
CCCTGCTGCACGCAACGCCAACATTCTGTCGAAACAACTACTGTATAGTC
TGCACACCACAAGAGCGAACACTTGGACGTTTTTGTATTTAGCACCGTTC
ACCTGCGTTGCAGCCCTTGGAAAATGAAAAAAAATGCTGACAAAAATATA
CTGGGTAGCTCCACAATTTTCCGGAACCCCTCTTGATTCTTGCTGCTCAG
CCCAACCCAGGTCACCCTGTTAGCCACCACTGGTACTACTGGCACAGACC
GCCGATCTCCATGAAACTGGCAGACCAGTCCAACATAATTCCGACCTACG
TTCGCAAGCAGTTTTCACGCCGTGATTTCGCTTTCAGCTCGACATTTGCT
TCATCATGCCGATCGGTTGCTGTTGCGAACGCCCTGTTTTGCAGCTCTCT
TGGTGGCAAACTTCCGCACGCCGTCGCGGTCCGAGAACGGGACTACGTCC
TTCGTGCCTTCGCCCCACGGCAGAAGGATAACCACAGAACTCAATGCAAT
AATCGAGAATTTGGATCAGCATCATTTCGCCCTCCATGGGTCTGCACGTA
GAATCGGCACCGAACTGCCTCTAAACACGAGTAGTTGGC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16015:2022..4010-

>mRNA_Ecto-sp13_S_contig16015.4407.1 ID=mRNA_Ecto-sp13_S_contig16015.4407.1|Name=mRNA_Ecto-sp13_S_contig16015.4407.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=216bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16015:2022..4010- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCCCTTTTCAAGTCCTGAGGCTGATCCCGGAGGTGTACGAGCCAGTTGA
GATCAAGCGCTCTCTTGGTGGCAAACTTCCGCACGCCGTCGCGGTCCGAG
AACGGGACTACGTCCTTCGTGCCTTCGCCCCACGGCAGAAGGATAACCAC
AGAACTCAATGCAATAATCGAGAATTTGGATCAGCATCATTTCGCCCTCC
ATGGGTCTGCACGTAG
back to top