mRNA_Ecto-sp13_S_contig16004.4401.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig16004.4401.1
Unique Name	mRNA_Ecto-sp13_S_contig16004.4401.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig16004.4401.1 vs. uniprot
Match: A0A453FVP7_AEGTS (Histone H4 n=2 Tax=Triticinae TaxID=1648030 RepID=A0A453FVP7_AEGTS)

HSP 1 Score: 207 bits (527), Expect = 4.130e-67
Identity = 107/112 (95.54%), Postives = 111/112 (99.11%), Query Frame = 1

Query:   37 LSSFSQQANMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 372
            LSS+S+QA MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   17 LSSYSEQAAMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 128

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BLAST of mRNA_Ecto-sp13_S_contig16004.4401.1 vs. uniprot
Match: A0A3L6V663_9STRA (Histone H4 n=2 Tax=Stramenopiles TaxID=33634 RepID=A0A3L6V663_9STRA)

HSP 1 Score: 202 bits (514), Expect = 3.590e-65
Identity = 106/112 (94.64%), Postives = 108/112 (96.43%), Query Frame = 1

Query:   37 LSSFSQQANMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 372
            +SS    +NMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   14 VSSNKPTSNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 125

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BLAST of mRNA_Ecto-sp13_S_contig16004.4401.1 vs. uniprot
Match: A0A452ZB17_AEGTS (Histone H4 n=2 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A452ZB17_AEGTS)

HSP 1 Score: 200 bits (509), Expect = 2.140e-64
Identity = 105/124 (84.68%), Postives = 110/124 (88.71%), Query Frame = 1

Query:    1 PAPSTSQHTNQTLSSFSQQANMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 372
            P P    H + + +     A MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    3 PPPLLQPHISSSAARRGSSATMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 126

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BLAST of mRNA_Ecto-sp13_S_contig16004.4401.1 vs. uniprot
Match: A0A2P5DRN5_PARAD (Histone H4 (Fragment) n=1 Tax=Parasponia andersonii TaxID=3476 RepID=A0A2P5DRN5_PARAD)

HSP 1 Score: 200 bits (509), Expect = 2.220e-64
Identity = 103/108 (95.37%), Postives = 107/108 (99.07%), Query Frame = 1

Query:   49 SQQANMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 372
            S++A MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   20 SRRAKMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 127

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BLAST of mRNA_Ecto-sp13_S_contig16004.4401.1 vs. uniprot
Match: A0A2S2QRE4_9HEMI (Histone H4 (Fragment) n=4 Tax=Hexapoda TaxID=6960 RepID=A0A2S2QRE4_9HEMI)

HSP 1 Score: 199 bits (507), Expect = 3.230e-64
Identity = 102/109 (93.58%), Postives = 107/109 (98.17%), Query Frame = 1

Query:   46 FSQQANMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 372
            F + +NM+GRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    9 FVRSSNMTGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 117

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BLAST of mRNA_Ecto-sp13_S_contig16004.4401.1 vs. uniprot
Match: UPI0008738E0C (histone H4-like n=1 Tax=Lates calcarifer TaxID=8187 RepID=UPI0008738E0C)

HSP 1 Score: 200 bits (508), Expect = 3.700e-64
Identity = 104/110 (94.55%), Postives = 106/110 (96.36%), Query Frame = 1

Query:   43 SFSQQANMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 372
            SFS    MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   23 SFSDPNKMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 132

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BLAST of mRNA_Ecto-sp13_S_contig16004.4401.1 vs. uniprot
Match: A0A8J5LQK2_ZINOF (Histone H4 n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5LQK2_ZINOF)

HSP 1 Score: 200 bits (509), Expect = 3.980e-64
Identity = 103/113 (91.15%), Postives = 109/113 (96.46%), Query Frame = 1

Query:   34 TLSSFSQQANMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 372
            + +SF+   +MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   33 SCTSFTSFVDMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 145

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BLAST of mRNA_Ecto-sp13_S_contig16004.4401.1 vs. uniprot
Match: A0A024G0M5_9STRA (Histone H4 n=40 Tax=Stramenopiles TaxID=33634 RepID=A0A024G0M5_9STRA)

HSP 1 Score: 199 bits (505), Expect = 4.170e-64
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1

Query:   64 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 372
            MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

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BLAST of mRNA_Ecto-sp13_S_contig16004.4401.1 vs. uniprot
Match: UPI00167F827B (histone H3.1t-like n=3 Tax=Euteleostomi TaxID=117571 RepID=UPI00167F827B)

HSP 1 Score: 203 bits (516), Expect = 4.230e-64
Identity = 107/116 (92.24%), Postives = 110/116 (94.83%), Query Frame = 1

Query:   25 TNQTLSSFSQQANMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 372
            TN +LS    Q NMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:  108 TNLSLSLARTQFNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 223

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BLAST of mRNA_Ecto-sp13_S_contig16004.4401.1 vs. uniprot
Match: A0A1G4M1Q1_ANAPH (Core histone H2A/H2B/H3/H4 n=1 Tax=Anaplasma phagocytophilum TaxID=948 RepID=A0A1G4M1Q1_ANAPH)

HSP 1 Score: 200 bits (508), Expect = 4.650e-64
Identity = 103/105 (98.10%), Postives = 105/105 (100.00%), Query Frame = 1

Query:   58 ANMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 372
            ANMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   35 ANMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 139

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig16004.4401.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig16004.4401.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A453FVP7_AEGTS	4.130e-67	95.54	Histone H4 n=2 Tax=Triticinae TaxID=1648030 RepID=...	[more]
A0A3L6V663_9STRA	3.590e-65	94.64	Histone H4 n=2 Tax=Stramenopiles TaxID=33634 RepID...	[more]
A0A452ZB17_AEGTS	2.140e-64	84.68	Histone H4 n=2 Tax=Aegilops tauschii subsp. strang...	[more]
A0A2P5DRN5_PARAD	2.220e-64	95.37	Histone H4 (Fragment) n=1 Tax=Parasponia andersoni...	[more]
A0A2S2QRE4_9HEMI	3.230e-64	93.58	Histone H4 (Fragment) n=4 Tax=Hexapoda TaxID=6960 ...	[more]
UPI0008738E0C	3.700e-64	94.55	histone H4-like n=1 Tax=Lates calcarifer TaxID=818...	[more]
A0A8J5LQK2_ZINOF	3.980e-64	91.15	Histone H4 n=1 Tax=Zingiber officinale TaxID=94328...	[more]
A0A024G0M5_9STRA	4.170e-64	100.00	Histone H4 n=40 Tax=Stramenopiles TaxID=33634 RepI...	[more]
UPI00167F827B	4.230e-64	92.24	histone H3.1t-like n=3 Tax=Euteleostomi TaxID=1175...	[more]
A0A1G4M1Q1_ANAPH	4.650e-64	98.10	Core histone H2A/H2B/H3/H4 n=1 Tax=Anaplasma phago...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig16004	contig	Ecto-sp13_S_contig16004:252..626 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Taxonomic scope	Metazoa
Stop	1
Start	0
Seed ortholog score	203.8
Seed ortholog evalue	4.8e-50
Seed eggNOG ortholog	215358.XP_010754582.1
Model size	375
KEGG ko	ko:K11253,ko:K11254
KEGG Pathway	ko05034,ko05202,ko05203,ko05322,map05034,map05202,map05203,map05322
Hectar predicted targeting category	other localisation
Exons	1
EggNOG free text desc.	protein heterodimerization activity
EggNOG OGs	3A1HI@33154,3BQAA@33208,3D789@33213,48C3X@7711,495KF@7742,COG2036@1,KOG3467@2759
Cds size	375
COG Functional cat.	B
Best tax level	Vertebrata
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko03036,ko04147

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681462846.0169659-CDS-Ecto-sp13_S_contig16004:251..626	1681462846.0169659-CDS-Ecto-sp13_S_contig16004:251..626	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig16004 252..626 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig16004.4401.1	prot_Ecto-sp13_S_contig16004.4401.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig16004 252..626 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig16004:252..626+
coding sequence from alignment at Ecto-sp13_S_contig16004:252..626+

protein sequence of mRNA_Ecto-sp13_S_contig16004.4401.1

>prot_Ecto-sp13_S_contig16004.4401.1 ID=prot_Ecto-sp13_S_contig16004.4401.1|Name=mRNA_Ecto-sp13_S_contig16004.4401.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=125bp
PAPSTSQHTNQTLSSFSQQANMSGRGKGGKGLGKGGAKRHRKVLRDNIQG
ITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARR
KTVTAMDVVYALKRQGRTLYGFGG*

mRNA from alignment at Ecto-sp13_S_contig16004:252..626+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig16004.4401.1 ID=mRNA_Ecto-sp13_S_contig16004.4401.1|Name=mRNA_Ecto-sp13_S_contig16004.4401.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=375bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16004:252..626+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCCGCACCTTCGACCTCACAACACACCAACCAAACTCTCTCATCCTTCTC
TCAACAAGCAAACATGTCTGGACGCGGAAAAGGCGGTAAGGGTCTGGGCA
AGGGCGGTGCCAAGCGCCACCGCAAGGTACTCCGCGACAACATCCAGGGC
ATCACCAAGCCCGCTATCCGCCGTCTGGCTCGCCGTGGCGGTGTGAAGCG
CATCTCGGGACTCATCTACGAGGAGACCCGTGGCGTGCTCAAGGTGTTCC
TCGAGAACGTCATCCGTGACTCGGTGACCTACACCGAGCACGCCCGCCGG
AAGACCGTGACGGCCATGGATGTGGTGTACGCCCTCAAGCGCCAGGGCCG
CACCCTCTACGGTTTCGGTGGCTAA

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16004:252..626+

>mRNA_Ecto-sp13_S_contig16004.4401.1 ID=mRNA_Ecto-sp13_S_contig16004.4401.1|Name=mRNA_Ecto-sp13_S_contig16004.4401.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=375bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16004:252..626+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCCGCACCTTCGACCTCACAACACACCAACCAAACTCTCTCATCCTTCTC
TCAACAAGCAAACATGTCTGGACGCGGAAAAGGCGGTAAGGGTCTGGGCA
AGGGCGGTGCCAAGCGCCACCGCAAGGTACTCCGCGACAACATCCAGGGC
ATCACCAAGCCCGCTATCCGCCGTCTGGCTCGCCGTGGCGGTGTGAAGCG
CATCTCGGGACTCATCTACGAGGAGACCCGTGGCGTGCTCAAGGTGTTCC
TCGAGAACGTCATCCGTGACTCGGTGACCTACACCGAGCACGCCCGCCGG
AAGACCGTGACGGCCATGGATGTGGTGTACGCCCTCAAGCGCCAGGGCCG
CACCCTCTACGGTTTCGGTGGCTAA