mRNA_Ecto-sp13_S_contig16.4396.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16.4396.1
Unique NamemRNA_Ecto-sp13_S_contig16.4396.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16.4396.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16contigEcto-sp13_S_contig16:26055..26981 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size334
Hectar predicted targeting categoryother localisation
Exons3
Cds size333
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462845.369198-CDS-Ecto-sp13_S_contig16:26055..262021681462845.369198-CDS-Ecto-sp13_S_contig16:26055..26202Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16 26056..26202 -
1681462845.3780057-CDS-Ecto-sp13_S_contig16:26598..267601681462845.3780057-CDS-Ecto-sp13_S_contig16:26598..26760Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16 26599..26760 -
1681462845.386276-CDS-Ecto-sp13_S_contig16:26957..269811681462845.386276-CDS-Ecto-sp13_S_contig16:26957..26981Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16 26958..26981 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16.4396.1prot_Ecto-sp13_S_contig16.4396.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16 26056..26981 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16.4396.1

>prot_Ecto-sp13_S_contig16.4396.1 ID=prot_Ecto-sp13_S_contig16.4396.1|Name=mRNA_Ecto-sp13_S_contig16.4396.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=111bp
AVSVASVKGSPGYDINVFFRRSSYLRDFVTTARRHGMLLGESSLPVAAYI
RGVDLSEAATQQAILDLEIALVSSSQSTVASAASTDQGAIASGNATSSWL
RGFINWLPSSS
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mRNA from alignment at Ecto-sp13_S_contig16:26055..26981-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16.4396.1 ID=mRNA_Ecto-sp13_S_contig16.4396.1|Name=mRNA_Ecto-sp13_S_contig16.4396.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=927bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16:26055..26981- (Ectocarpus species13 EcNAP12_S_4_19m)
GCAGTTTCCGTTGCTTCTGTGAAGGTGAGAATCTCTCGGTCAGGGACATC
ATCATGCAAGGATGCCGCACATTCGGGAGGCGAGCAAACGCATGCGCATC
GACGTTTGAGGGAATCGTTCCTCTTGTCGTCGCTACAATGGTGACTGCAG
GATTGAAGCGAGAAGCACAAAAAATCCCTCACGTGTGCGCACCCGCGGAC
TACCCCGTTTGCGGAATACAGGGATCACCAGGCTATGACATCAACGTTTT
TTTCCGGCGTTCGAGCTACCTTCGTGACTTTGTGACGACCGCTCGTAGAC
ACGGTATGCTGCTCGGCGAAAGCTCCTTACCTGTGGCAGCGTACATTCGG
GGCGTAGATCTCTCCGAAGCTGCGACCCAGCAGGCGAGACCTCTTCGGCA
TTTCGGCATTGGTGCCATTGACGTTGATTGCGGCTCATGGTTTACGTCAA
TCTTGTTGACCCGTGGACCGTCTCCTTGCTTCTGCACGTGCCGCTCCGCC
CAGGCCTTTGAGCTACATTGTGGTTTCGGCTACTAAGCTGAATCAGGATA
ATGGGTACAACCGTCTTGTTAAGAAGCGTCGAAGTGTTGATATACGAATT
GTGATGAGTATTACAAGTGGAATTCCTCGGAGAGCAGGGAACACCTGGAG
AACATCACCGGGTTGCTGTCCCAAATTTTGTGGATGTCTGCTACGTATGT
TCGGGTTATTTGCAAACAGCACTCCTCGCCCTACCTCACTCATGACATGA
GAACCCCTCGCGCTTTCGACGATGTTCAGGCTATTCTCGACCTCGAGATT
GCTCTCGTGTCGTCTTCACAGTCCACTGTTGCCAGTGCCGCCAGCACAGA
TCAAGGAGCCATTGCATCCGGAAACGCCACGTCGTCGTGGCTGCGTGGGT
TTATCAATTGGCTTCCGTCTTCCTCGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16:26055..26981-

>mRNA_Ecto-sp13_S_contig16.4396.1 ID=mRNA_Ecto-sp13_S_contig16.4396.1|Name=mRNA_Ecto-sp13_S_contig16.4396.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=333bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16:26055..26981- (Ectocarpus species13 EcNAP12_S_4_19m)
GCAGTTTCCGTTGCTTCTGTGAAGGGATCACCAGGCTATGACATCAACGT
TTTTTTCCGGCGTTCGAGCTACCTTCGTGACTTTGTGACGACCGCTCGTA
GACACGGTATGCTGCTCGGCGAAAGCTCCTTACCTGTGGCAGCGTACATT
CGGGGCGTAGATCTCTCCGAAGCTGCGACCCAGCAGGCTATTCTCGACCT
CGAGATTGCTCTCGTGTCGTCTTCACAGTCCACTGTTGCCAGTGCCGCCA
GCACAGATCAAGGAGCCATTGCATCCGGAAACGCCACGTCGTCGTGGCTG
CGTGGGTTTATCAATTGGCTTCCGTCTTCCTCG
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