mRNA_Ecto-sp13_S_contig15990.4391.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig15990.4391.1 vs. uniprot
Match: D7G254_ECTSI (Ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G254_ECTSI) HSP 1 Score: 662 bits (1708), Expect = 1.650e-224 Identity = 411/446 (92.15%), Postives = 421/446 (94.39%), Query Frame = 1
Query: 1 FGRSSSTVDARDYGGKCPLHLAAINGTSTGVVEALLRAGADVNSRDEADRTPLIYAATASTTGAIKXXXXXXXXXXXXXXXXXXANGETALHKAVLMPAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHCWNEYLRPPLTVACMSGRLGAVELLLPTLSPRQINMRDRVNGADDGGVTPLVAAVWYACEEEEXEQDEALRIVEALLAAGADPTLRAFRGMTPLESVARGASTKASPTLGPSLVRMLVAAGADVNDVGSTRGCTPLHFACMEGACAEVIQALLDAGADACAPCAGMRFMTPLQLAGGGGNAEAVEVLIGRPECGGLNAVGCLPSRATALACAVNHGKTEVCRFLLERGANMDLLPSSSSEAGGGKPLTATSLVELAAQCGHLETMNLLIQAKVFKDSTGAAVGVQGWMEIKSDDDVHE 1338
FGR SS VDA+DYGG+CPLHLAAINGTSTGVVEALLRAGADVNSRDEADRTPLIYAATASTTGA+KXXXXXXXXXXXXX +NGE ALHKAVLMPA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHCWN +LRPPLTVACMSGRLGAVELLLP LSPRQINMRDRV+GADDGGVTPLVAAVWYACEE X EALRIVEALLAAGADPTLRAFRGMTPLESVARGASTKASPTLGPSLVRMLVAAGADVN+VGSTRGCTPL FACMEGACAEVIQALLDAGADACAPCAGMRFMTPLQLAGGGGNAEAVEVLIGRPECGGLN VGCLPSRATALACAV HG TEVCRFLLERGA+MDLLPSSSSEAGGGKPL ATSLVE AAQCGHL+TMNLLIQAKVFKD+TGAAVGVQG MEIKSDDD HE
Sbjct: 346 FGRPSSMVDAKDYGGRCPLHLAAINGTSTGVVEALLRAGADVNSRDEADRTPLIYAATASTTGAVKXXXXXXXXXXXXXPDLKDSNGEAALHKAVLMPAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHCWNGHLRPPLTVACMSGRLGAVELLLPRLSPRQINMRDRVSGADDGGVTPLVAAVWYACEEXXXXXXEALRIVEALLAAGADPTLRAFRGMTPLESVARGASTKASPTLGPSLVRMLVAAGADVNEVGSTRGCTPLQFACMEGACAEVIQALLDAGADACAPCAGMRFMTPLQLAGGGGNAEAVEVLIGRPECGGLNTVGCLPSRATALACAVKHGSTEVCRFLLERGADMDLLPSSSSEAGGGKPLPATSLVEFAAQCGHLDTMNLLIQAKVFKDNTGAAVGVQGRMEIKSDDDGHE 791
BLAST of mRNA_Ecto-sp13_S_contig15990.4391.1 vs. uniprot
Match: A0A6H5L536_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L536_9PHAE) HSP 1 Score: 262 bits (670), Expect = 4.720e-75 Identity = 202/224 (90.18%), Postives = 209/224 (93.30%), Query Frame = 1
Query: 1 FGRSSSTVDARDYGGKCPLHLAAINGTSTGVVEALLRAGADVNSRDEADRTPLIYAATASTTGAIKXXXXXXXXXXXXXXXXXXANGETALHKAVLMPAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHCWNEYLRPPLTVACMSGRLGAVELLLPTLSPRQINMRDRVNGADDGGVTPLVAAVWYACEEEEXEQDEALRIVEAL 672
FGR SS VDA+D GGKCPLH AAING STGVVEAL+RAGADVNSRDEADRTPLIYAATASTTGA+KXXXXXXXXXXXXX +NGE ALHKAVLMPAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHCWNEYLRPPLTVACMSGRLGAVELLLP LSPRQINMRDRV+G DDGGVTPLVAAVWYACEEE E+DEALRIVEA+
Sbjct: 236 FGRRSSMVDAKDCGGKCPLHFAAINGASTGVVEALIRAGADVNSRDEADRTPLIYAATASTTGAVKXXXXXXXXXXXXXPDLKDSNGEAALHKAVLMPAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHCWNEYLRPPLTVACMSGRLGAVELLLPRLSPRQINMRDRVSGVDDGGVTPLVAAVWYACEEE--EEDEALRIVEAV 457
BLAST of mRNA_Ecto-sp13_S_contig15990.4391.1 vs. uniprot
Match: D7G253_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G253_ECTSI) HSP 1 Score: 221 bits (564), Expect = 1.660e-57 Identity = 216/429 (50.35%), Postives = 261/429 (60.84%), Query Frame = 1
Query: 22 VDARDYGGKCPLHLAAINGTSTGVVEALLRA-GADVNSRDEADRTPLIYAATASTTGAIKXXXXXXXXXXXXXXXXXXANGETALHKAVLMPAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHCWNEYLRPPLTVACMSGRLGAVELLLPTLSPRQINMRDRVNGADDGGVTPLVAAVWYACEEEEXEQDEALRIVEALLAAGADPTL-RAFRGMTP--------LESVARGASTKASPTLGPSLVRMLVAAGADVNDVGSTRGCTPLHFACMEGACAEVIQALLDAGADACAPCAGMRFMTPLQLAGG-GGNAEAVEVLIGRPECGGLNAVGCLPS-RATALACAVNHGKTEVCRFLLERGANMDLLPSSSSEAGGGKPLTATSLVELAAQCGHLETMNLLIQAKVFKD 1272
V+A G LHLAA G +VEAL+R G V+ D RT L A +A+ A+K G T L +AV PAG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX HCWNE L+ PL VAC G L AV LLLP LS RQ+NMR + D G TPL AA+ CE + E + IVEALL GAD + ++ G++ LE VA A PT+GP +VR LVA GAD+ND+ +PLH AC+EGACAEVIQ LLD GAD PC + + PL LA G GGN A+ +L+G GGLNAV P+ RAT L AV + TEV RFLLE GA+MD++P+ G P + +S++E AA G L++MNLLIQAK+F++
Sbjct: 353 VNAVGTDGGTALHLAATMGRDD-IVEALIRTTGILVDKVDNHKRTALFRAVSANHVEAVKTLLKAGASCNDRDRF-----GYTPLRQAVKRPAGAIMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGHCWNESLQTPLLVACKRGNLSAVRLLLPHLSERQVNMR---SSTDSGAETPLSAAI--TCEPPKME---IVDIVEALLKNGADLHMQKSGNGVSAIFTALILKLEGVAVD-RIAAHPTIGPRVVRALVAGGADINDMTFASAYSPLHAACIEGACAEVIQELLDLGADVDVPCVSVSSLAPLHLAAGFGGNIGAIRLLMGLRNSGGLNAVAPPPNDRATILYLAVQNNMTEVVRFLLEEGADMDMMPNEDD----GTP-SKSSMIEYAAFAGSLDSMNLLIQAKMFRE 761
BLAST of mRNA_Ecto-sp13_S_contig15990.4391.1 vs. uniprot
Match: A0A7W1R7V8_9ACTN (Ankyrin repeat domain-containing protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W1R7V8_9ACTN) HSP 1 Score: 56.2 bits (134), Expect = 7.890e-5 Identity = 61/164 (37.20%), Postives = 73/164 (44.51%), Query Frame = 1
Query: 772 GPSLVRMLVAAGADVNDVGS--TRGCTPLHFACMEGACAEVIQALLDAGADACAPCAGMRFMTPLQLAGGGGNAEAVEVLIGRPECGGLNAVGCL-----------------PSRAT-ALACAVNHGKTEVCRFLLERGANM------DLLPSSSSEAGGGKPL 1185
GP++VR LV AGADVN TPLH+A A VI ALLDAGAD AP A + + L A G GN A L+ R L L P+ AT AL A + R+LLERGA + DL P ++EA G L
Sbjct: 81 GPTVVRRLVEAGADVNAHSKFDAHTETPLHWAASSDDVA-VIDALLDAGADIEAPGAVLGGGSALADACGFGNLAAARRLVERGARTRLKDAAALGMMDRVESAFAASPAPTPTEATQALWSACRQAQERAARYLLERGAEINWIGWDDLTPLDAAEAAGATEL 243 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15990.4391.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig15990.4391.1 >prot_Ecto-sp13_S_contig15990.4391.1 ID=prot_Ecto-sp13_S_contig15990.4391.1|Name=mRNA_Ecto-sp13_S_contig15990.4391.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=351bp MPAGGVLAALLAGGASPGSGGEKGWSPLHVACEYNARGTVAALLRAGAVPback to top mRNA from alignment at Ecto-sp13_S_contig15990:2..3618+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig15990.4391.1 ID=mRNA_Ecto-sp13_S_contig15990.4391.1|Name=mRNA_Ecto-sp13_S_contig15990.4391.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3617bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15990:2..3618+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15990:2..3618+ >mRNA_Ecto-sp13_S_contig15990.4391.1 ID=mRNA_Ecto-sp13_S_contig15990.4391.1|Name=mRNA_Ecto-sp13_S_contig15990.4391.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1053bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15990:2..3618+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |