prot_Ecto-sp13_S_contig15986.4387.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig15986.4387.1
Unique Nameprot_Ecto-sp13_S_contig15986.4387.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length79
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15986.4387.1 vs. uniprot
Match: A0A6H5JPU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPU8_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 2.670e-6
Identity = 27/37 (72.97%), Postives = 30/37 (81.08%), Query Frame = 0 
Query:   11 LLRSWPSLVTQRWLSNNNLTTLPEEIFGDLTALTLLN 47
            LLRSWPSL T+R+LS N LTTLPE IFG LTAL  L+
Sbjct:    4 LLRSWPSLDTRRYLSYNELTTLPEGIFGGLTALETLS 40
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BLAST of mRNA_Ecto-sp13_S_contig15986.4387.1 vs. uniprot
Match: A0A6H5JSZ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSZ2_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 4.520e-6
Identity = 28/39 (71.79%), Postives = 30/39 (76.92%), Query Frame = 0 
Query:    8 VTALLRSWPSLVTQRWLSNNNLTTLPEEIFGDLTALTLL 46
            V  LLRSWPSL T+R+LS N LTTLPE IFG LTAL  L
Sbjct:  132 VCYLLRSWPSLDTRRYLSYNELTTLPEGIFGGLTALQTL 170
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BLAST of mRNA_Ecto-sp13_S_contig15986.4387.1 vs. uniprot
Match: A0A6H5K3U0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3U0_9PHAE)

HSP 1 Score: 50.4 bits (119), Expect = 1.950e-5
Identity = 27/39 (69.23%), Postives = 30/39 (76.92%), Query Frame = 0 
Query:    8 VTALLRSWPSLVTQRWLSNNNLTTLPEEIFGDLTALTLL 46
            V  LLRSWPSL T+R+L+ N LTTLPE IFG LTAL  L
Sbjct:   20 VCYLLRSWPSLDTRRYLNINELTTLPEGIFGGLTALQTL 58
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15986.4387.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JPU8_9PHAE2.670e-672.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JSZ2_9PHAE4.520e-671.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3U0_9PHAE1.950e-569.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 24..60
e-value: 2.2E-7
score: 30.5
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 9..70
e-value: 1.2E-9
score: 39.6
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 13..16
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..12
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 17..79
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..16
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..21
score: 0.582
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 24..59

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15986contigEcto-sp13_S_contig15986:743..2971 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15986.4387.1mRNA_Ecto-sp13_S_contig15986.4387.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig15986 607..2971 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig15986.4387.1 ID=prot_Ecto-sp13_S_contig15986.4387.1|Name=mRNA_Ecto-sp13_S_contig15986.4387.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=79bp
MVIYCLLVTALLRSWPSLVTQRWLSNNNLTTLPEEIFGDLTALTLLNLDG
NSLECLPSNELVEADDDSPSSAFGLHVNA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001611Leu-rich_rpt
IPR032675LRR_dom_sf