mRNA_Ecto-sp13_S_contig15986.4387.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15986.4387.1
Unique NamemRNA_Ecto-sp13_S_contig15986.4387.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15986.4387.1 vs. uniprot
Match: A0A6H5JPU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPU8_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 8.020e-6
Identity = 27/37 (72.97%), Postives = 30/37 (81.08%), Query Frame = 2 
Query:  167 LLRSWPSLVTQRWLSNNNLTTLPEEIFGDLTALTLLN 277
            LLRSWPSL T+R+LS N LTTLPE IFG LTAL  L+
Sbjct:    4 LLRSWPSLDTRRYLSYNELTTLPEGIFGGLTALETLS 40
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BLAST of mRNA_Ecto-sp13_S_contig15986.4387.1 vs. uniprot
Match: A0A6H5JSZ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSZ2_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 1.390e-5
Identity = 28/39 (71.79%), Postives = 30/39 (76.92%), Query Frame = 2 
Query:  158 VTALLRSWPSLVTQRWLSNNNLTTLPEEIFGDLTALTLL 274
            V  LLRSWPSL T+R+LS N LTTLPE IFG LTAL  L
Sbjct:  132 VCYLLRSWPSLDTRRYLSYNELTTLPEGIFGGLTALQTL 170
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BLAST of mRNA_Ecto-sp13_S_contig15986.4387.1 vs. uniprot
Match: A0A6H5K3U0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3U0_9PHAE)

HSP 1 Score: 50.8 bits (120), Expect = 5.980e-5
Identity = 27/39 (69.23%), Postives = 30/39 (76.92%), Query Frame = 2 
Query:  158 VTALLRSWPSLVTQRWLSNNNLTTLPEEIFGDLTALTLL 274
            V  LLRSWPSL T+R+L+ N LTTLPE IFG LTAL  L
Sbjct:   20 VCYLLRSWPSLDTRRYLNINELTTLPEGIFGGLTALQTL 58
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15986.4387.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JPU8_9PHAE8.020e-672.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JSZ2_9PHAE1.390e-571.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3U0_9PHAE5.980e-569.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15986contigEcto-sp13_S_contig15986:607..2971 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size374
Hectar predicted targeting categorysignal peptide
Exons3
Cds size237
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462844.627365-UTR-Ecto-sp13_S_contig15986:606..7421681462844.627365-UTR-Ecto-sp13_S_contig15986:606..742Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15986 607..742 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462844.6389456-CDS-Ecto-sp13_S_contig15986:742..8791681462844.6389456-CDS-Ecto-sp13_S_contig15986:742..879Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15986 743..879 +
1681462844.649534-CDS-Ecto-sp13_S_contig15986:2330..23751681462844.649534-CDS-Ecto-sp13_S_contig15986:2330..2375Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15986 2331..2375 +
1681462844.6601417-CDS-Ecto-sp13_S_contig15986:2916..29711681462844.6601417-CDS-Ecto-sp13_S_contig15986:2916..2971Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15986 2917..2971 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15986.4387.1prot_Ecto-sp13_S_contig15986.4387.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15986 743..2971 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15986.4387.1

>prot_Ecto-sp13_S_contig15986.4387.1 ID=prot_Ecto-sp13_S_contig15986.4387.1|Name=mRNA_Ecto-sp13_S_contig15986.4387.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=79bp
MVIYCLLVTALLRSWPSLVTQRWLSNNNLTTLPEEIFGDLTALTLLNLDG
NSLECLPSNELVEADDDSPSSAFGLHVNA
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mRNA from alignment at Ecto-sp13_S_contig15986:607..2971+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15986.4387.1 ID=mRNA_Ecto-sp13_S_contig15986.4387.1|Name=mRNA_Ecto-sp13_S_contig15986.4387.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2365bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15986:607..2971+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGACAAACACCCTTAACGCTCCAGTTTTGTCTTCCTGGGCACGTCTAACC
CCGTGGGTTCTGTTTTGGTGTGCACAGGGTCGGAAAATATTCCGTTACTG
TACCAAAGCATTTGAACGTGGTCAGTACATAAGCAAATGGTGATTTATTG
CTTACTTGTCACCGCCTTGCTCCGCTCATGGCCCTCCCTTGTTACTCAAA
GGTGGCTGTCAAACAACAACCTGACCACGCTGCCGGAGGAAATCTTCGGG
GATCTTACGGCCCTGACATTACTGTAAGTAGCTGGGATGCTTTTGCGTAT
GAGCTCACCCTGCGCTATAGAGAAAAGAAAGCACCAAAGGCTTTCCCGCT
TTGCAGAACTGTAGTCGGTGGATTTGTTCACTATTTTCTCTCCAAGAGAG
AAGGTGGATATCGAACGAGTGGTCGGGAGATGCTGGGAAGAGCACCATTA
CACTTGGAGTGCTGACGATCGGCGAGAGTTTGCTACCTTCAAATCACCCC
CCTTGCTCTAACCTGGCGTCAAGGATGATGGTAAGCAGGGCACCTATGTT
TGGGGTGTCGGTGCGTGTACTATGTTATCACGCTCGCGGGCTCTTGTCGA
GAGCGTGTTGTACAAAGGAGTGACTCAAGTTCCTTGATAATTAGAGAGTG
ACAGGCATGAGCAAGAAGAGGCAAAGCCTGCTGCACCATAAGGCCGTCTA
TTATATTCATATCTATCTCATCTGCGTACCGCTCTCGGAGATCTCGGAGA
CTTGTATCCTGCCGAGTACACACATACCCTTTGGAACGGGTAGCTGACGC
AGTTCGAACGCCGTTCGGTGTTGAAATGGTGTTCGTCGTCTCCATTGATT
GACGATGGTCCTCTTACAACTTGTCTCTTTGCACCCTAGTTTCGTGCTGA
TACTCAACGGTCTACAGTATCATCACATCACAGTCTGTTGCTGTCTGTGT
GTTATTCCGTTCATTATTGGTAGCTTCAGACGCCACGTAGCTAAACGTAC
TGCGCGAAAAAAACATATTTTGTGGTCCACGTGATACCTCGCCGTGGCAC
TTTATGTTGTATCCTCGTCGTTGTAGCTTACGGCGCACGTGCTAATACAC
TGAGGTCTGCCTGCGTTCGGCGTGAGATCACACGCATAATTTTGGGTGCT
TCCCTCATCTCAAGCGTATTTGGCATAATGGCTTCAACCTGCCGCTTCTA
TCTGGTATATCCTTTCCTGCTTACCAGAGTTAAGAACGAACACCTGCAAA
TCCAGGAAATATGGTTGTATTTCGCGCTTGTGGGGAATTGTAGACATACG
TTGGCCCCAGGTAGCGGGCAATGATAGTCAGTTTCCCGACATGGCCCGCC
TTTTGGGTGCCCCTCTTACAAAATCTCCTATCTCATGCTCCTCCGGTTTT
ACTGGAAGTTCTCCCTTTCCCTGGCTAGATTCTATTATGTCTCTGGAGAA
GTGCATCGATTTCCTCCCAGGCAAACCATGAGAATAAAGGAATATCGTCC
TATACTTGAACTACCATTTTCGCTCTACCCTCGACCCTCATCGGCGTGGT
GCTGCGGCAATGATTTGTTGCTGTGTTAGGCGATGGCTTCTCACCAACTG
TTCGTATCGTTTGTGGCCACCATGCTCACCTTGTTGTTCCTTCCACAACG
TTTGATCCGTTGTTGCATCTGTCGTTCTCGTCTGGTCTTGCGCTGGCAAA
TCTCGTTCGGGACCTGAATTTTAGGAACCTGGACGGAAACTCTCTGGAGT
GCTTGCCGTCAAATGAACTGTGAGGAACGCTTGAAAAGCATCGATCTATC
GCTGTGTCATACATATCACGAGAACAACATGGACCCTATCGCGTGTTTGC
GGATCCGGCCAGCATCACGTAGATACCGAGCACACCTGTTGTTCGCTGCT
GCTCGCGGACGGGACGAATGAGTCTTACTACAATAACCACTTGGTGTTCA
TGCACTTCAAGGGCCTTGTGATGCGTGATGCGACAAGTATAGCACTTACT
TGTCAGAATCTTGAACACAAACGTGGTTCGTTGAACACTAAAATTGTCGA
GCCGCTTGAGTTATCGCGTTGGCCATATGGCTCGGGCCCACAACAAGTTT
TCATTTCGAACGCGCGGGCTCTTAGCACGTTTAAATAATGCATTGCATCT
TCCGTTGAATCGGCAGAAAGAAGAGTTTTTCCGGCATCCTCCTTGCTTAT
GCTTTACCCGTGGGGCATGCTCATTGATATATTGCATCGTAGATCGACAT
CGCCTTATTTGCTCAGACTGTATAGTTAATCCTGTTTGACCTGCTGTGCG
CACTTCGCAGGGTGGAAGCTGATGATGATTCCCCGTCATCTGCATTCGGG
CTGCACGTTAATGCA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15986:607..2971+

>mRNA_Ecto-sp13_S_contig15986.4387.1 ID=mRNA_Ecto-sp13_S_contig15986.4387.1|Name=mRNA_Ecto-sp13_S_contig15986.4387.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=237bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15986:607..2971+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGATTTATTGCTTACTTGTCACCGCCTTGCTCCGCTCATGGCCCTC
CCTTGTTACTCAAAGGTGGCTGTCAAACAACAACCTGACCACGCTGCCGG
AGGAAATCTTCGGGGATCTTACGGCCCTGACATTACTGAACCTGGACGGA
AACTCTCTGGAGTGCTTGCCGTCAAATGAACTGGTGGAAGCTGATGATGA
TTCCCCGTCATCTGCATTCGGGCTGCACGTTAATGCA
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