mRNA_Ecto-sp13_S_contig15968.4381.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15968.4381.1
Unique NamemRNA_Ecto-sp13_S_contig15968.4381.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15968.4381.1 vs. uniprot
Match: A0A6H5KGH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGH8_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 5.440e-27
Identity = 49/52 (94.23%), Postives = 51/52 (98.08%), Query Frame = 3 
Query:  195 GPAMGPWGLPWFCWPIFVLLIPYVILVTIGVLLIQYALPWCTTETAGGRETT 350
            GPAMGPWGLPWFCWPIFVLLIPYVILVTIGV++IQYALPWCTTETAGGR TT
Sbjct:   59 GPAMGPWGLPWFCWPIFVLLIPYVILVTIGVMVIQYALPWCTTETAGGRVTT 110
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15968.4381.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KGH8_9PHAE5.440e-2794.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15968contigEcto-sp13_S_contig15968:1544..3462 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size351
Hectar predicted targeting categoryother localisation
Exons2
Cds size255
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462844.0898237-CDS-Ecto-sp13_S_contig15968:1543..17671681462844.0898237-CDS-Ecto-sp13_S_contig15968:1543..1767Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15968 1544..1767 +
1681462844.102764-CDS-Ecto-sp13_S_contig15968:3336..33671681462844.102764-CDS-Ecto-sp13_S_contig15968:3336..3367Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15968 3337..3367 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462844.1196141-UTR-Ecto-sp13_S_contig15968:3367..34621681462844.1196141-UTR-Ecto-sp13_S_contig15968:3367..3462Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15968 3368..3462 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15968.4381.1prot_Ecto-sp13_S_contig15968.4381.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15968 1544..3367 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15968.4381.1

>prot_Ecto-sp13_S_contig15968.4381.1 ID=prot_Ecto-sp13_S_contig15968.4381.1|Name=mRNA_Ecto-sp13_S_contig15968.4381.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=85bp
CLGRGVGVGSVAVGVGSVAVLEAGGLVALGGDRGGSAGLEGGSAGLGGAS
EAPGFSAVDGRSSGAAQPWDRGDCHGSAGRSSCS*
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mRNA from alignment at Ecto-sp13_S_contig15968:1544..3462+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15968.4381.1 ID=mRNA_Ecto-sp13_S_contig15968.4381.1|Name=mRNA_Ecto-sp13_S_contig15968.4381.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1919bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15968:1544..3462+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGCCTGGGCCGGGGGGTGGGGGTGGGTTCGGTGGCGGTGGGGGTGGGTTC
GGTGGCGGTTTTGGAGGCGGGGGGCCTGGTGGCTTTGGGGGGGGACCGGG
GGGGTTCGGCGGGCCTGGAAGGGGGTTCGGCGGGCCTGGGTGGGGCTTCG
GAGGCCCCGGGTTTTTCGGCGGTGGATGGCCGTTCATCTGGGGCGGCCCA
GCCATGGGACCGTGGGGATTGCCAGTGAGTTCCTTCAGGCGCTTGTGTGA
AGTGGTTTGGATGCATGCACATGCATCCGCGTATGCACGTGTATTGCTAT
CGCCTTCCAATCGTGGAACAGTTTTTCAACCTTCCCTCTCCATTTCTTTT
CGAGCATGGTATGCTCTCTCCCTCTCGGAACGGATGTCTTCTACCGTATC
TACGGTAGTAACTTTTTGGATCTTTTGCCCTGGGTGTTGCACCAGGCAAG
AGCAAGAAACGAAAACGTGGGCGAGCACGCATGTCGACACCTGTAGTAAG
CAGGTCGAGGGGAATGTGACAACGAGTGTTGTTTTTTGTGTGAAACGACA
CGCTTTAACGCCTTTTCAAGACTTGCCGAAGTTTTCAATCAAGTGTAGAA
TTTGGTTGGGCTGATTTCTATCGTTTTTCCACGAGATTGTTCGTCTGGAA
GGGTTTGCGGGATCGAATGGAGCCAACGGTGAACAAAACAAATTCCTTAA
TTCAAGGTACCGTTGAATGAACCGGTTAGCAGCTAGCCGAAAGGATGCAA
CAGAGACACTCACACACCTCTACTCGGAAACGGCTCTGATTCCATGTTTT
TTTTCGTGTTTTTTTGGCGCACGGTACCCGGGAGTGGTTCTGTTGATGTG
TGTGTCGGGCGACTATATACGTTGCGTCCCTTAAACTAAAAAAAGAAAAA
AAACAATCACGCAGCATCACACCCAGATAATATGTCAAAAAATGTTTCTG
GCTTCGCCCTATTGCAGATTGAAAGCTACCGAACCAAAGACGCAAGATCA
CACACAATCTACATGTACGTTGAAGCTTTCGTGTTTCACCCGTGTTGCAA
CTTGTTCTTTACGGAGTTTGACGGCCGAGGTCGTACCACAGCAGAGCGTG
TCGTGTTTTTTTGTCCACAAGAGTACCGTCCGTCGCTGCAAGCGCGTTGT
CGCCGTGTCTACATCGGCCACAAATCGAGCTTGATTACAACAGGCGTTAC
AATTGTTCCCCCCGGTTCAGTTTAGCGGCCCATAGTTTCACAATATGTTA
TTTCCGCTACTAAGGGCATCGCTGCTAAACCGAATTGGCAGGTATGTAGT
ACGTAGCTGTTGACTACCGAGGTGCATGCGTGCCACTAGATTTTGGAACC
GCTGTTCAGGGCATCCCTCTAAGCAGGGAAGGGCTAGACCGGGACTACGA
CGGTATGGTGTTTTCTCCCTCTGTTCCCGCTCTCGAATACGGTTGGATCG
GCCGCGTTTCGAGCGGATACGCGGCTTGGAAGGGGGGAACTGTGTGGGTT
CGCGCGCAAATTGTCCCGGACCCTTCCCTATTCGCGTAGCACCGTAGCAA
GCTCCACGTGTGTGAGAATCACGCAATGCTTTCCTCTCTACCACATCAGT
ACCCGTCCATCGCGGAAAGAAAACAAGGAGATTTAGCATGTCATTCGTCA
CCCAGCTTTTGCTCGTTTATGCGAGATGTATGTGTGTGTGTTTTTTTTAA
CTGTTTCACAGTACAATTGAACACGATAATCGTCTCTGCCTGTTATGCTT
GCACCGCCGTCTCGTTTTTTCTTTTGTCTTTTTTCCTTCCAAGTGGTTCT
GCTGGCCGATCTTCGTGCTCTTGATCCCGTACGTGATCTTGGTGACGATC
GGGGTCTTGTTGATCCAGTACGCCCTCCCGTGGTGCACGACGGAAACTGC
TGGCGGCCGCGAAACGACG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15968:1544..3462+

>mRNA_Ecto-sp13_S_contig15968.4381.1 ID=mRNA_Ecto-sp13_S_contig15968.4381.1|Name=mRNA_Ecto-sp13_S_contig15968.4381.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=255bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15968:1544..3462+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGCCTGGGCCGGGGGGTGGGGGTGGGTTCGGTGGCGGTGGGGGTGGGTTC
GGTGGCGGTTTTGGAGGCGGGGGGCCTGGTGGCTTTGGGGGGGGACCGGG
GGGGTTCGGCGGGCCTGGAAGGGGGTTCGGCGGGCCTGGGTGGGGCTTCG
GAGGCCCCGGGTTTTTCGGCGGTGGATGGCCGTTCATCTGGGGCGGCCCA
GCCATGGGACCGTGGGGATTGCCATGGTTCTGCTGGCCGATCTTCGTGCT
CTTGA
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