mRNA_Ecto-sp13_S_contig15964.4379.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15964.4379.1
Unique NamemRNA_Ecto-sp13_S_contig15964.4379.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15964.4379.1 vs. uniprot
Match: A0A6H5K3K8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3K8_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 3.550e-6
Identity = 25/43 (58.14%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:    1 QGKYEEAGALYRRAIAIEEKALGLDHPTLAKTLNNRANALQEQ 129
            QGKY EA  LY R+ AI+EK LGL+HP +A +LNNR   L+ Q
Sbjct:   18 QGKYMEAEPLYERSQAIQEKVLGLEHPDVASSLNNRVELLRAQ 60
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BLAST of mRNA_Ecto-sp13_S_contig15964.4379.1 vs. uniprot
Match: A0A6H5JJK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJK0_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 7.590e-6
Identity = 26/37 (70.27%), Postives = 31/37 (83.78%), Query Frame = 1 
Query:    1 QGKYEEAGALYRRAIAIEEKALGLDHPTLAKTLNNRA 111
            QGKYEEAG LY R++AI EK LG DHP +A++LNNRA
Sbjct:  798 QGKYEEAGPLYERSLAIREKVLGPDHPDVAQSLNNRA 834
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BLAST of mRNA_Ecto-sp13_S_contig15964.4379.1 vs. uniprot
Match: A0A6H5K4D0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4D0_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 7.880e-6
Identity = 27/43 (62.79%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:    1 QGKYEEAGALYRRAIAIEEKALGLDHPTLAKTLNNRANALQEQ 129
            QGKY+EAG LY R++AI EKALG DHP +A++LNN A  L+ Q
Sbjct:  831 QGKYDEAGKLYERSLAIREKALGPDHPDVAQSLNNWAVLLESQ 873
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15964.4379.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K3K8_9PHAE3.550e-658.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJK0_9PHAE7.590e-670.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4D0_9PHAE7.880e-662.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15964contigEcto-sp13_S_contig15964:299..3296 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size915
Hectar predicted targeting categoryother localisation
Exons7
Cds size915
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15964.4379.1prot_Ecto-sp13_S_contig15964.4379.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15964 299..3296 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462843.9285698-CDS-Ecto-sp13_S_contig15964:298..4271681462843.9285698-CDS-Ecto-sp13_S_contig15964:298..427Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15964 299..427 +
1681462843.9370723-CDS-Ecto-sp13_S_contig15964:741..8671681462843.9370723-CDS-Ecto-sp13_S_contig15964:741..867Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15964 742..867 +
1681462843.9455056-CDS-Ecto-sp13_S_contig15964:1158..12841681462843.9455056-CDS-Ecto-sp13_S_contig15964:1158..1284Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15964 1159..1284 +
1681462843.9542484-CDS-Ecto-sp13_S_contig15964:1561..16871681462843.9542484-CDS-Ecto-sp13_S_contig15964:1561..1687Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15964 1562..1687 +
1681462843.9637213-CDS-Ecto-sp13_S_contig15964:1963..20691681462843.9637213-CDS-Ecto-sp13_S_contig15964:1963..2069Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15964 1964..2069 +
1681462843.973057-CDS-Ecto-sp13_S_contig15964:2340..25101681462843.973057-CDS-Ecto-sp13_S_contig15964:2340..2510Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15964 2341..2510 +
1681462843.982443-CDS-Ecto-sp13_S_contig15964:3164..32961681462843.982443-CDS-Ecto-sp13_S_contig15964:3164..3296Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15964 3165..3296 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15964.4379.1

>prot_Ecto-sp13_S_contig15964.4379.1 ID=prot_Ecto-sp13_S_contig15964.4379.1|Name=mRNA_Ecto-sp13_S_contig15964.4379.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=305bp
QGKYEEAGALYRRAIAIEEKALGLDHPTLAKTLNNRANALQEQGKYGEAD
PLYKRVIDINEKALGPEHPEVVRGLNNRVTGLEAQGNYEEADALRVRVIE
IEEKELGSDNPQLSRTLNNRARSLQARGKYEEADALYRRAVDIYDKAPGP
DNPEVITALNNWGLMLQAQSKYEEADSLYLRAIEISEKLLGPDDLEVAKS
INTRAYAARLLCAMDTPIQDKHEEADALYLRAFEIREKALGPDDPRLAES
LNNRVFALLAQGNHAEAKPLLERTLAIRRNALGEEHEDTVSSSKALKALN
ASQG*
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mRNA from alignment at Ecto-sp13_S_contig15964:299..3296+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15964.4379.1 ID=mRNA_Ecto-sp13_S_contig15964.4379.1|Name=mRNA_Ecto-sp13_S_contig15964.4379.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2998bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15964:299..3296+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGGCAAGTACGAGGAGGCGGGCGCCTTGTACCGGAGAGCGATAGCCAT
CGAGGAGAAAGCGCTTGGCCTAGACCACCCGACTCTTGCTAAAACCCTCA
ACAACAGGGCGAATGCGTTACAAGAACAAGTAAGGGGCTTTTCCTTGGCA
CACGTCTCTATCGTTCTCCCTTTCAGGACACCAATAATCAAGGACCGATA
TTGGTCCAATGTTTTTGTTCACAAGCACGCCTGTCTCCCGTAGTAGTTGT
TGAATCCTATGTTTTCGGGGCGATCTGCACTCCACCTCACTACTAGCACG
TTGGCCTACCGTGAAGAAGGAGTAGTTCAAGTATGGCCCGCACGCCTTAA
CGGGATTGATGCGGTGTGCTGCCTTCGAATCTTCACCGATGGCTTCGAAA
ACGGTGGTGGGATGAGATTGGCAACGGCACCTTTTTCGTGCAGGGCAAGT
ACGGAGAGGCGGACCCGCTGTACAAGAGAGTAATCGACATCAACGAGAAA
GCGCTCGGCCCCGAGCACCCAGAGGTCGTTAGAGGCCTGAACAACCGGGT
GACGGGGTTGGAAGCACAGGTATTGCGGCCGTCCCTTGAAGTGTCGCCCC
GGTCGGTGTACCGTGGTCCGGGAGGGGAGATGTACCTATCGAGCACAGCT
TGATTTTCGGGGCATCCTTGCTGCTGAGGTCTAGCCATGGAGCGACCGGC
GTCCGAATGTGCTGAAAAGGTTGCCCCGTGACTTGGAAGGGTTCGGTGAG
CCGTAGCAATGTCGCAGTCGGCCCCATGAAGTGAAGAAGGACTGGGTTGT
GTGGTTGATAAGTGTTTCCCACGCATGGGCTTCACTTGATCTTTCGCTTT
TCGTGTGCAGGGAAATTACGAAGAGGCGGACGCCCTCCGCGTGCGCGTAA
TCGAGATCGAGGAGAAAGAGCTCGGCTCCGACAACCCGCAGCTCTCTAGA
ACCCTAAACAACCGGGCGAGATCGTTGCAAGCACGGGTGAGCCATGTTAC
CTTTTGAGCCACCTCAGTTCGGCGTGTATGGAACAGCTGTTGTTGGGTCA
AGTACAGGCAAGCGCGTCTTCAGGCCGCCCGTTATTCCCGTCGAATATCT
GCTGGTGGCATGGTGTCGCCAACGTGCCGAGTCGCACCTGCCGCAGGTCG
TTGAACGCTTGATGAGCTGAGGTCGTAGGGGAGTCCTCACCGATTGATGA
TGGAAACAAAAGCGGGATGCAGATGACCACCCGTTATTACTGCCGCATGC
ATCTTCCCTTCAGGGCAAGTACGAGGAGGCGGACGCCTTGTACCGGAGAG
CTGTCGATATCTACGACAAGGCGCCTGGTCCTGACAACCCAGAGGTTATC
ACAGCCCTGAACAACTGGGGCCTCATGTTGCAAGCACAGGTGGTAGCCTG
TTCCCGTTTAGGCATTGTCGTCGATGTATCGATCTCGGATGTTGTTGAGT
GGATTAGAGCCTGTCATCTCATTACAACCATCGCTACAGCTGTCGATCTG
CAGATAGGCGGTGCCGCCAAAGTGCCGAGTTCCAACTGCCGTATGATTGT
TGTGAACAACGCGCAAAGTCTTCAAATGGCTACTTAAAACGGTACGTAGG
ATGCTGCTTGACAACTTGTCCCGATATGCTTACCCCCGCACCATTGAACT
CTTTTTTTCGCACAGAGCAAGTACGAGGAGGCGGACTCCTTGTACCTGAG
GGCCATCGAGATCTCTGAGAAATTGCTCGGCCCGGACGACCTGGAGGTTG
CCAAGTCCATCAACACCCGGGGTAACTTGGCAGCAGCACAGGCGAGAGCT
CACTCCCTGCCGGCGGCCTCCTAGAAGCAGTTCGTAGAGGCAGCTAAATA
GCTGTTGTTGTGTGAAGTTGAGCCAAGCGCATGTCGGCGGGGGCAAGCCA
CAGCTGTGGATCTGAGGGTTGAATCGTACCGCAAAGGCGCCGACTTGTGC
CTGCCGCAGGAGGTTGGAGGGTTTGGCGTGCTGAAAAAGCTGTGATTTAG
TCTTCATCGGCTACGGAAAGGGTAGCGGAATGTGGTCGACAGCATATGCC
GCGCGTTTGCTGTGCGCCATGGATACCCCCATCCAGGACAAGCACGAGGA
GGCGGACGCCTTGTACCTGAGGGCCTTCGAGATCAGGGAAAAAGCGCTCG
GTCCCGACGACCCTAGACTTGCTGAAAGCCTGAACAACCGGGTATTCGCA
TTGCTAGCACAGGTGACTCCCCGTTCCGTTATTTCGTTGTCATTCGTGAA
TTTTGCCACCTGGGTTCACGCTACCCGTACCAGAGGCTTCGGCGCGGACT
TGATGAAAGCCCGTTCTGCCAGGTAGACAGTAGACTCGCCACGTTAGTGC
GAGGTCGTTAACTTTCGAGCCGCATCCGTGAACTCCTTGTGGATCATGCC
CCACCTCATCCTATCCGCGATCTATGAGCCTCAAGGAGAAGAGGCTTGAC
CCACACCAACCAGGCCATGGCAGAACCCCTCCACTTTATACCCAGCCAGG
GATATCGGCTATACAGGTGATAGTTCCCTCCGGAGTCGATCTTCGTTGGC
GATCACATTCCGTTCATGAAGCCCCCCCAATGCAATATCTCTCCCGTCAA
GCACCCGTGCCGCTGGAGTCCCCGACATACCGACAAGAGTTTGAGGATTC
TTTCAAGACGCGTTATATTTTTTGGGTGTGCATCGCCCGTCCCGTTGTGT
TTCTTGAAGCGAATTGATCGATCCTGTGACATTGAGCAGCAGTATGCATA
CCCATGTCGAGCCCCTTCGAGGGGGGCCGGCACATGGGAACGCGTTTGTG
GAAAACCCAAAGGATCCACCGACACGGGCCCCGCTTCGCTTCTCCCTCGT
GCGCCGCCTTCTTCAGGGGAATCACGCCGAGGCGAAGCCGCTCTTGGAGC
GAACCCTAGCCATTCGGCGGAACGCGCTCGGGGAGGAGCATGAGGATACA
GTATCCTCTTCGAAAGCGCTGAAGGCGTTGAACGCCAGCCAGGGATAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15964:299..3296+

>mRNA_Ecto-sp13_S_contig15964.4379.1 ID=mRNA_Ecto-sp13_S_contig15964.4379.1|Name=mRNA_Ecto-sp13_S_contig15964.4379.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=915bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15964:299..3296+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGGCAAGTACGAGGAGGCGGGCGCCTTGTACCGGAGAGCGATAGCCAT
CGAGGAGAAAGCGCTTGGCCTAGACCACCCGACTCTTGCTAAAACCCTCA
ACAACAGGGCGAATGCGTTACAAGAACAAGGCAAGTACGGAGAGGCGGAC
CCGCTGTACAAGAGAGTAATCGACATCAACGAGAAAGCGCTCGGCCCCGA
GCACCCAGAGGTCGTTAGAGGCCTGAACAACCGGGTGACGGGGTTGGAAG
CACAGGGAAATTACGAAGAGGCGGACGCCCTCCGCGTGCGCGTAATCGAG
ATCGAGGAGAAAGAGCTCGGCTCCGACAACCCGCAGCTCTCTAGAACCCT
AAACAACCGGGCGAGATCGTTGCAAGCACGGGGCAAGTACGAGGAGGCGG
ACGCCTTGTACCGGAGAGCTGTCGATATCTACGACAAGGCGCCTGGTCCT
GACAACCCAGAGGTTATCACAGCCCTGAACAACTGGGGCCTCATGTTGCA
AGCACAGAGCAAGTACGAGGAGGCGGACTCCTTGTACCTGAGGGCCATCG
AGATCTCTGAGAAATTGCTCGGCCCGGACGACCTGGAGGTTGCCAAGTCC
ATCAACACCCGGGCATATGCCGCGCGTTTGCTGTGCGCCATGGATACCCC
CATCCAGGACAAGCACGAGGAGGCGGACGCCTTGTACCTGAGGGCCTTCG
AGATCAGGGAAAAAGCGCTCGGTCCCGACGACCCTAGACTTGCTGAAAGC
CTGAACAACCGGGTATTCGCATTGCTAGCACAGGGGAATCACGCCGAGGC
GAAGCCGCTCTTGGAGCGAACCCTAGCCATTCGGCGGAACGCGCTCGGGG
AGGAGCATGAGGATACAGTATCCTCTTCGAAAGCGCTGAAGGCGTTGAAC
GCCAGCCAGGGATAG
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