mRNA_Ecto-sp13_S_contig15961.4375.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15961.4375.1
Unique NamemRNA_Ecto-sp13_S_contig15961.4375.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15961.4375.1 vs. uniprot
Match: D7G9H2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9H2_ECTSI)

HSP 1 Score: 55.5 bits (132), Expect = 5.570e-9
Identity = 27/28 (96.43%), Postives = 27/28 (96.43%), Query Frame = 1 
Query:   76 SWTGDLDMILMGMDTGTLGVARLRTGHL 159
            S TGDLDMILMGMDTGTLGVARLRTGHL
Sbjct:    3 SGTGDLDMILMGMDTGTLGVARLRTGHL 30
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BLAST of mRNA_Ecto-sp13_S_contig15961.4375.1 vs. uniprot
Match: A0A6H5K145_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K145_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 2.260e-8
Identity = 27/28 (96.43%), Postives = 27/28 (96.43%), Query Frame = 1 
Query:   76 SWTGDLDMILMGMDTGTLGVARLRTGHL 159
            S TGDLDMILMGMDTGTLGVARLRTGHL
Sbjct:   65 SGTGDLDMILMGMDTGTLGVARLRTGHL 92
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15961.4375.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G9H2_ECTSI5.570e-996.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K145_9PHAE2.260e-896.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15961contigEcto-sp13_S_contig15961:1056..1702 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size159
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size159
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462843.678331-CDS-Ecto-sp13_S_contig15961:1055..11341681462843.678331-CDS-Ecto-sp13_S_contig15961:1055..1134Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15961 1056..1134 +
1681462843.6913242-CDS-Ecto-sp13_S_contig15961:1622..17021681462843.6913242-CDS-Ecto-sp13_S_contig15961:1622..1702Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15961 1623..1702 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15961.4375.1prot_Ecto-sp13_S_contig15961.4375.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15961 1056..1702 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15961.4375.1

>prot_Ecto-sp13_S_contig15961.4375.1 ID=prot_Ecto-sp13_S_contig15961.4375.1|Name=mRNA_Ecto-sp13_S_contig15961.4375.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=53bp
CCVSHCGVTSERGTVTNHSGRAAGASWTGDLDMILMGMDTGTLGVARLRT
GHL
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mRNA from alignment at Ecto-sp13_S_contig15961:1056..1702+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15961.4375.1 ID=mRNA_Ecto-sp13_S_contig15961.4375.1|Name=mRNA_Ecto-sp13_S_contig15961.4375.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=647bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15961:1056..1702+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGTTGTGTATCGCATTGCGGCGTCACCTCTGAACGAGGCACGGTGACCAA
CCATTCCGGCCGAGCAGCGGGAGCTTCGTGTAAGGAACGACGTGTACAGC
AGTAGCGCCCGAACGTGGTGGTAGAGAAATCGAGCCTCAAATACTCGAAA
TTTTCTAACTCGAGCACAGTTCGTGAGCCCCGCAAAGAAACCCTACATCC
ATGTATGGCGGCCATATGTAGCACCATCTAAGAGAACTGAGAACCTTCAC
CTTGGCCAAACTAGAGTTCCTCAAGCGCGGGTGACCTATCTTAATGTCGG
TCGCCATCACGTTTTTCAGCCCCCCTCTCCCATTGGAAGGCTGGGCACGC
TTTGTTGTCGCGGGCGTGCCTCTCTCTCACACAACCACCCCGCTCCCTCT
CCCTTGTCGCCCCTCTTGTTCTCCGTCTTCGCGTGTGTCTCTCGGGATCG
GCTCTCCTCCGCTGCCTTTTCACATTCGGCGCTTCGTCCGCTTGGCTCTT
GGGGGGACTTTTGGTCCCCACTGCTACTGTCGAAAACTTGGCCATCGTGG
AAAAGAAATGGAATCAGGGACCGGAGATTTGGACATGATTTTGATGGGCA
TGGATACGGGGACCCTGGGCGTGGCAAGGCTTCGCACGGGGCACCTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15961:1056..1702+

>mRNA_Ecto-sp13_S_contig15961.4375.1 ID=mRNA_Ecto-sp13_S_contig15961.4375.1|Name=mRNA_Ecto-sp13_S_contig15961.4375.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=159bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15961:1056..1702+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGTTGTGTATCGCATTGCGGCGTCACCTCTGAACGAGGCACGGTGACCAA
CCATTCCGGCCGAGCAGCGGGAGCTTCGTGGACCGGAGATTTGGACATGA
TTTTGATGGGCATGGATACGGGGACCCTGGGCGTGGCAAGGCTTCGCACG
GGGCACCTT
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