mRNA_Ecto-sp13_S_contig15954.4370.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15954.4370.1
Unique NamemRNA_Ecto-sp13_S_contig15954.4370.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15954.4370.1 vs. uniprot
Match: D7FYY0_ECTSI (Acyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYY0_ECTSI)

HSP 1 Score: 165 bits (418), Expect = 1.450e-51
Identity = 81/87 (93.10%), Postives = 82/87 (94.25%), Query Frame = 1 
Query:    1 MITTAAREGKKKISPYMPQEGAAGMAYHGLCVFLVTLTVNYLVIPFQLLGLTESLDVWGTFSFGIHVLVVALYLVCQVIPTKKVQRS 261
            MITTAAREGKKKISPYMPQEGAAGMAYHGLCVFLVTLTVNYLVIPFQLLGLTESLDVWGTFSFGIH LVV LYLVCQ+IPTKK Q  
Sbjct:    1 MITTAAREGKKKISPYMPQEGAAGMAYHGLCVFLVTLTVNYLVIPFQLLGLTESLDVWGTFSFGIHALVVGLYLVCQMIPTKKAQSK 87
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BLAST of mRNA_Ecto-sp13_S_contig15954.4370.1 vs. uniprot
Match: A0A6H5JJU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJU3_9PHAE)

HSP 1 Score: 167 bits (424), Expect = 8.330e-48
Identity = 82/87 (94.25%), Postives = 83/87 (95.40%), Query Frame = 1 
Query:    1 MITTAAREGKKKISPYMPQEGAAGMAYHGLCVFLVTLTVNYLVIPFQLLGLTESLDVWGTFSFGIHVLVVALYLVCQVIPTKKVQRS 261
            MITTAAREGKKKISPYMPQEGAAGMAYHGLCVFLVTLTVNYLVIPFQLLGLTESLDVWGTFSFGIH LV+ALYLVCQVIPTKK Q  
Sbjct:  418 MITTAAREGKKKISPYMPQEGAAGMAYHGLCVFLVTLTVNYLVIPFQLLGLTESLDVWGTFSFGIHALVIALYLVCQVIPTKKAQSK 504
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15954.4370.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FYY0_ECTSI1.450e-5193.10Acyltransferase n=1 Tax=Ectocarpus siliculosus Tax... [more]
A0A6H5JJU3_9PHAE8.330e-4894.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15954contigEcto-sp13_S_contig15954:122..1641 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size279
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionacyltransferase
Ec32 orthologEc-19_002900.1
Cds size279
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462843.2094088-CDS-Ecto-sp13_S_contig15954:121..2591681462843.2094088-CDS-Ecto-sp13_S_contig15954:121..259Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15954 122..259 -
1681462843.2195802-CDS-Ecto-sp13_S_contig15954:1500..16411681462843.2195802-CDS-Ecto-sp13_S_contig15954:1500..1641Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15954 1501..1641 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15954.4370.1prot_Ecto-sp13_S_contig15954.4370.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15954 122..1641 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15954.4370.1

>prot_Ecto-sp13_S_contig15954.4370.1 ID=prot_Ecto-sp13_S_contig15954.4370.1|Name=mRNA_Ecto-sp13_S_contig15954.4370.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=93bp
MITTAAREGKKKISPYMPQEGAAGMAYHGLCVFLVTLTVNYLVIPFQLLG
LTESLDVWGTFSFGIHVLVVALYLVCQVIPTKKVQRSVAPTY*
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mRNA from alignment at Ecto-sp13_S_contig15954:122..1641-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15954.4370.1 ID=mRNA_Ecto-sp13_S_contig15954.4370.1|Name=mRNA_Ecto-sp13_S_contig15954.4370.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1520bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15954:122..1641- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATCACCACCGCGGCGCGCGAGGGCAAGAAGAAGATCAGCCCGTACAT
GCCTCAGGAAGGGGCTGCGGGTATGGCGTATCACGGGTTGTGCGTCTTCC
TAGTCACCCTGACGGTGAACTATCTCGTCATCCCCTTCCAGGTGTGTGTG
TGTGTATGTGCGTGTGTGTGTTTTTTGTGACGCCATGCTGTCCATTTTAT
TTTTGCAGGACTTTTTCAGGGTAGGTTAGCCTGTGACCACGGGAATCGAC
CGCATCAAGTGTTAGATCAGTACAGAGGGAAGCAGGTGCTGGAAAGAGAG
TTTGGAACGGTTTTCAATGTGAACACAAAAACAACAGATGGAATAGAACG
ACGCACGTGGTTGCGCTCTTTCCTATTGTGAATGGCTAAGTCTGAAGGGG
TGCAACAAGTCAAAACTCTCGAATGTTCCCCGAGGAAAATAGATGCTACT
TCCATTGCCTTCGCGTGGGTGCTTTGCACGTCGTGGAACGCCACCGGCGT
GGAAGAAACGCATGGTGAATTTGTTGGCAACGAGCTACAGAACGAAAATT
CCGTTCCTACAGATGAAAGGGAAGAGGGATGCCTTGAAAGTGCCGCAGAA
GTGTCTCGGGAAGGATCATGTCGCGGCAGAAATTGTTGATACAGCAGATA
GAGGAAGGGAGAGAGAGAGAGAAGGAGAGAGAGACAGACAGAGAGACAGA
CAGACAGAGAGAGAGAGAGAAAGCAACCTTATTTTGTAGCGTACATGTAC
TCTGTCTACCCGTGATGTGATTGCTGCCTTTGGCTGGAACCTCTACCTTT
GTTACGAACCACCAACGACGAAACAACCGTTGTCGTTGGTCCTCGGTTTG
CAGTGCACAGCTTGGCGAGTGATTAATGAACGGCGCTTATCCCACAAGCG
CTTGCGACGGGTTTCTGTTTCCCGTCTGCTCGCGTTCATCACGATTCTTG
AGTGCGCCATTGTGTCGCCTCCTGCATATCCCCCCGTACGCTCGCTCAAG
GTCGGGGCGGTCTTTTTGCCCTGCTGATGGACAAAATTTATCAACCGTAC
TCCTCACGTAGGTATAAACTGTTTTCCTGGTCTGAGAAGAGCCGCGTAGA
GCGTGTGGCACAAACTGGCATGGGATATGCCCCTCCCGTCACCCATGCGC
CGCCTGAAGGGGATGGTGGCGTTGTCTGTGGTCGATGTCGCTTCTTTTCC
TCCCCCCGTCAGTTGCTTAGTCAAAGGTCTAAGGACTACGGCATGGACGA
CATTGAGTACCCCCTCCCACCCACCGCCAGCTGCCGTCAGTTGCTTGGTC
TGACGAAGTCGCTGGACGCGTGGACTGATGCTTTATGTCGCCTTTTTTTT
GTTGCCTTTCCCTGTGTGATGCCCCCCGACAGTTGCTTGGTCTGACGGAG
TCGCTGGACGTGTGGGGCACCTTCTCCTTCGGAATCCACGTCCTCGTCGT
AGCGCTTTACTTGGTCTGCCAAGTTATCCCGACGAAAAAGGTACAGCGAT
CAGTGGCCCCGACATACTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15954:122..1641-

>mRNA_Ecto-sp13_S_contig15954.4370.1 ID=mRNA_Ecto-sp13_S_contig15954.4370.1|Name=mRNA_Ecto-sp13_S_contig15954.4370.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=279bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15954:122..1641- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATCACCACCGCGGCGCGCGAGGGCAAGAAGAAGATCAGCCCGTACAT
GCCTCAGGAAGGGGCTGCGGGTATGGCGTATCACGGGTTGTGCGTCTTCC
TAGTCACCCTGACGGTGAACTATCTCGTCATCCCCTTCCAGTTGCTTGGT
CTGACGGAGTCGCTGGACGTGTGGGGCACCTTCTCCTTCGGAATCCACGT
CCTCGTCGTAGCGCTTTACTTGGTCTGCCAAGTTATCCCGACGAAAAAGG
TACAGCGATCAGTGGCCCCGACATACTAA
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