mRNA_Ecto-sp13_S_contig15937.4359.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15937.4359.1
Unique NamemRNA_Ecto-sp13_S_contig15937.4359.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15937.4359.1 vs. uniprot
Match: D7FXH9_ECTSI (Centrosomal protein 120 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXH9_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 3.170e-19
Identity = 49/52 (94.23%), Postives = 50/52 (96.15%), Query Frame = 1 
Query:    4 LEGKLRKALSEVEGRERKLKAREESWKTDHAQKLSELQLLQRRLREETKHQV 159
            LEGKLRKALSEV  RER+LKAREESWKTDHAQKLSELQLLQRRLREETKHQV
Sbjct: 1066 LEGKLRKALSEVGARERQLKAREESWKTDHAQKLSELQLLQRRLREETKHQV 1117
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15937.4359.1 vs. uniprot
Match: A0A6H5JVP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVP1_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 8.670e-17
Identity = 46/52 (88.46%), Postives = 47/52 (90.38%), Query Frame = 1 
Query:    4 LEGKLRKALSEVEGRERKLKAREESWKTDHAQKLSELQLLQRRLREETKHQV 159
            LEGKLRKALSEVE R R+L AREESW TDHAQKLSELQLLQRR REETKHQV
Sbjct:  996 LEGKLRKALSEVEARGRQLNAREESWTTDHAQKLSELQLLQRRPREETKHQV 1047
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15937.4359.1 vs. uniprot
Match: A0A7S2SG35_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SG35_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 7.120e-10
Identity = 34/52 (65.38%), Postives = 43/52 (82.69%), Query Frame = 1 
Query:    4 LEGKLRKALSEVEGRERKLKAREESWKTDHAQKLSELQLLQRRLREETKHQV 159
            LE +LR+AL +VE R+RKL A EE  +  HAQKLSELQLLQRRLRE+++H+V
Sbjct:  374 LESRLRRALQDVEARKRKLAAAEEDLRQQHAQKLSELQLLQRRLREDSRHEV 425
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15937.4359.1 vs. uniprot
Match: A0A7S3Y741_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y741_HETAK)

HSP 1 Score: 50.4 bits (119), Expect = 2.960e-6
Identity = 29/52 (55.77%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:    4 LEGKLRKALSEVEGRERKLKAREESWKTDHAQKLSELQLLQRRLREETKHQV 159
            LE +LRKAL+E EG++R   A  +    + A++LSELQL+QRR+REE KHQV
Sbjct:    6 LEARLRKALAEAEGQQRAAAAARQKDADEAARRLSELQLMQRRVREEAKHQV 57
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15937.4359.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FXH9_ECTSI3.170e-1994.23Centrosomal protein 120 n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JVP1_9PHAE8.670e-1788.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2SG35_9STRA7.120e-1065.38Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3Y741_HETAK2.960e-655.77Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15937contigEcto-sp13_S_contig15937:3297..3455 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score87.8
Seed ortholog evalue1.6e-15
Seed eggNOG ortholog2880.D7FXH9
Preferred nameCEP120
Model size159
KEGG koko:K16459
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000226,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005814,GO:0005815,GO:0005856,GO:0006810,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007097,GO:0007098,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0008022,GO:0008150,GO:0008283,GO:0009987,GO:0010564,GO:0010638,GO:0010824,GO:0010825,GO:0015630,GO:0016043,GO:0021537,GO:0021543,GO:0021846,GO:0021987,GO:0022008,GO:0022027,GO:0022402,GO:0030154,GO:0030900,GO:0030953,GO:0031023,GO:0031122,GO:0031344,GO:0031346,GO:0032501,GO:0032502,GO:0032879,GO:0032880,GO:0032886,GO:0033043,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044087,GO:0044089,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044450,GO:0044464,GO:0045724,GO:0045787,GO:0046605,GO:0046607,GO:0046907,GO:0048513,GO:0048518,GO:0048522,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051493,GO:0051495,GO:0051640,GO:0051641,GO:0051647,GO:0051649,GO:0051656,GO:0051726,GO:0060322,GO:0060491,GO:0061351,GO:0065007,GO:0070507,GO:0071840,GO:0090068,GO:0097435,GO:0120032,GO:0120034,GO:0120035,GO:1902017,GO:1902115,GO:1902117
Exons1
EggNOG free text desc.interkinetic nuclear migration
EggNOG OGs2CMAG@1,2QPT0@2759
Cds size159
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462842.4101896-CDS-Ecto-sp13_S_contig15937:3296..34551681462842.4101896-CDS-Ecto-sp13_S_contig15937:3296..3455Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15937 3297..3455 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15937.4359.1prot_Ecto-sp13_S_contig15937.4359.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15937 3297..3455 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15937.4359.1

>prot_Ecto-sp13_S_contig15937.4359.1 ID=prot_Ecto-sp13_S_contig15937.4359.1|Name=mRNA_Ecto-sp13_S_contig15937.4359.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=53bp
QLEGKLRKALSEVEGRERKLKAREESWKTDHAQKLSELQLLQRRLREETK
HQV
back to top

mRNA from alignment at Ecto-sp13_S_contig15937:3297..3455-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15937.4359.1 ID=mRNA_Ecto-sp13_S_contig15937.4359.1|Name=mRNA_Ecto-sp13_S_contig15937.4359.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=159bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15937:3297..3455- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGCTGGAGGGCAAGCTTCGAAAGGCGCTGTCCGAAGTAGAGGGGAGGGA
ACGGAAGCTAAAGGCTCGAGAGGAGTCATGGAAGACCGATCACGCTCAAA
AACTGTCGGAGTTGCAGCTGCTGCAGAGACGACTGAGGGAGGAGACCAAA
CACCAGGTA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15937:3297..3455-

>mRNA_Ecto-sp13_S_contig15937.4359.1 ID=mRNA_Ecto-sp13_S_contig15937.4359.1|Name=mRNA_Ecto-sp13_S_contig15937.4359.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=159bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15937:3297..3455- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGCTGGAGGGCAAGCTTCGAAAGGCGCTGTCCGAAGTAGAGGGGAGGGA
ACGGAAGCTAAAGGCTCGAGAGGAGTCATGGAAGACCGATCACGCTCAAA
AACTGTCGGAGTTGCAGCTGCTGCAGAGACGACTGAGGGAGGAGACCAAA
CACCAGGTA
back to top