mRNA_Ecto-sp13_S_contig15931.4354.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15931.4354.1
Unique NamemRNA_Ecto-sp13_S_contig15931.4354.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15931.4354.1 vs. uniprot
Match: A0A6H5L705_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L705_9PHAE)

HSP 1 Score: 179 bits (453), Expect = 2.480e-47
Identity = 128/178 (71.91%), Postives = 128/178 (71.91%), Query Frame = 3 
Query:  678 MRSRALSKATRSGARPLLFLSSKGIPNRHEIVRAFSESAGTNIVGRDGDSGSCGSGGGGGRDCSNXXXXXXXXDGDRGRAGGWRRWGGTATVGAGRAXXXXXXXXVGRRRLDELDAGSRRRGRRWLLTLARFMARPREFELRRAAAVRAFTPQKFRQEWELFWELVDPVFDGLEKTTK 1211
            MRSRALSKATRSGARPLLFLSSKGIPNRHEIVRAF ESAGTN  GRD  SGSC            XXXXXXXX                        XXXXXXXX     LDELD  SRRRGRRWLLTLARFMARPREFELRRAAAVR FTPQKFRQEWELFWELVDPVFDGLEK TK
Sbjct:    1 MRSRALSKATRSGARPLLFLSSKGIPNRHEIVRAFLESAGTNNGGRDDYSGSC-------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDELDERSRRRGRRWLLTLARFMARPREFELRRAAAVRTFTPQKFRQEWELFWELVDPVFDGLEKATK 171
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BLAST of mRNA_Ecto-sp13_S_contig15931.4354.1 vs. uniprot
Match: D8LLQ9_ECTSI (PH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLQ9_ECTSI)

HSP 1 Score: 135 bits (341), Expect = 5.350e-31
Identity = 76/97 (78.35%), Postives = 81/97 (83.51%), Query Frame = 2 
Query:    2 GEDAEVSVQAGGGRRDSAGVARLPSGDGGGAQALPKIASNAAY-SAVETTGVRG*REKRWRRRR*TELSVLVCRREDVGEPPGGEPRGCHRRRRGWG 289
            GEDAE SV+A G RRDSAG+ARLP+GDGGGAQALP  ASNAA  SAV+TTGVRG REKR RR    ELS +VCRREDVGEPPGGEPRG HRRR GWG
Sbjct:  777 GEDAEASVEARGVRRDSAGLARLPAGDGGGAQALPNTASNAAAASAVKTTGVRGRREKRRRR---AELSAVVCRREDVGEPPGGEPRGFHRRRGGWG 870
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BLAST of mRNA_Ecto-sp13_S_contig15931.4354.1 vs. uniprot
Match: D8LLQ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLQ8_ECTSI)

HSP 1 Score: 108 bits (271), Expect = 4.900e-26
Identity = 49/56 (87.50%), Postives = 50/56 (89.29%), Query Frame = 2 
Query:  659 LGGCQHHAFACPVQGHPLGGAAPSLSLVQRHPKPARDRPRLLGVGGDQHRWTGRRL 826
            +GGCQHHAF CPVQGHPLGGA P L LVQRHPKPARDRPRLLGVGGDQ R TGRRL
Sbjct:    1 MGGCQHHAFPCPVQGHPLGGATPPLPLVQRHPKPARDRPRLLGVGGDQQRRTGRRL 56
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BLAST of mRNA_Ecto-sp13_S_contig15931.4354.1 vs. uniprot
Match: D8LLQ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLQ7_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 1.800e-20
Identity = 45/46 (97.83%), Postives = 46/46 (100.00%), Query Frame = 3 
Query: 1074 MARPREFELRRAAAVRAFTPQKFRQEWELFWELVDPVFDGLEKTTK 1211
            MARPREFELRRAAAVRAFTPQKFRQEWELFWELVDPVFDGLEKTT+
Sbjct:    1 MARPREFELRRAAAVRAFTPQKFRQEWELFWELVDPVFDGLEKTTE 46
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BLAST of mRNA_Ecto-sp13_S_contig15931.4354.1 vs. uniprot
Match: A0A6H5L884_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L884_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 4.620e-6
Identity = 28/29 (96.55%), Postives = 28/29 (96.55%), Query Frame = 3 
Query:    3 VKMQRLVSKPEEGGGTRQEWLDCLREMVE 89
            VKMQRLVSKPEE GGTRQEWLDCLREMVE
Sbjct:  320 VKMQRLVSKPEECGGTRQEWLDCLREMVE 348
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15931.4354.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5L705_9PHAE2.480e-4771.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLQ9_ECTSI5.350e-3178.35PH domain-containing protein n=1 Tax=Ectocarpus si... [more]
D8LLQ8_ECTSI4.900e-2687.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LLQ7_ECTSI1.800e-2097.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L884_9PHAE4.620e-696.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15931contigEcto-sp13_S_contig15931:696..3767 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1211
Hectar predicted targeting categoryother localisation
Exons3
Cds size1203
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462842.1484728-CDS-Ecto-sp13_S_contig15931:695..12441681462842.1484728-CDS-Ecto-sp13_S_contig15931:695..1244Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15931 696..1244 -
1681462842.159231-CDS-Ecto-sp13_S_contig15931:2497..30701681462842.159231-CDS-Ecto-sp13_S_contig15931:2497..3070Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15931 2498..3070 -
1681462842.1743686-CDS-Ecto-sp13_S_contig15931:3678..37591681462842.1743686-CDS-Ecto-sp13_S_contig15931:3678..3759Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15931 3679..3759 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462842.1857622-UTR-Ecto-sp13_S_contig15931:3759..37671681462842.1857622-UTR-Ecto-sp13_S_contig15931:3759..3767Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15931 3760..3767 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15931.4354.1prot_Ecto-sp13_S_contig15931.4354.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15931 696..3759 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15931.4354.1

>prot_Ecto-sp13_S_contig15931.4354.1 ID=prot_Ecto-sp13_S_contig15931.4354.1|Name=mRNA_Ecto-sp13_S_contig15931.4354.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=401bp
MQRLVSKPEEGGGTRQEWLDCLREMVEAHKLSRKSRPTPPTPPSRLRVYE
GDGRRGGGGGGEPSFPSLFAAARTSASLPAGSPAAATADGVGGARAATTT
PAVPPAHTRTRSGSSSSSSVSASGSAYSGGPPHDEAFPFLPSQHVGQRPS
RSSATASSLGNGQRSATAGGGGGGGGGGLPRGRELRRLAKKIGALLRDFS
PSSSLEAFEVEEARLRLWVAANIMRSRALSKATRSGARPLLFLSSKGIPN
RHEIVRAFSESAGTNIVGRDGDSGSCGSGGGGGRDCSNGSCSGGGDDGDR
GRAGGWRRWGGTATVGAGRAAAAAAAAAVGRRRLDELDAGSRRRGRRWLL
TLARFMARPREFELRRAAAVRAFTPQKFRQEWELFWELVDPVFDGLEKTT
K
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mRNA from alignment at Ecto-sp13_S_contig15931:696..3767-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15931.4354.1 ID=mRNA_Ecto-sp13_S_contig15931.4354.1|Name=mRNA_Ecto-sp13_S_contig15931.4354.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3072bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15931:696..3767- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGTGAAGATGCAGAGGTTAGTGTCCAAGCCGGAGGAGGGCGGCGGGACT
CGGCAGGAGTGGCTCGACTGCCTTCGGGAGATGGTGGAGGTGAGTTTTTT
TAAAGAGATGATGCCACCGCCCGGTCTCTGCCTTTGACAGCCTTGGTCGG
GACTGTTAACTTTTGGCACACTGGTGTGCACCCAAGGAGTTCCGACGCTC
CGCTGGATCCATCGCAGTGGGTAGGACACCACTCTGTTGTATAATCTGCC
TTCTTCCCTGGAATCGTCGAGCAAAGGCCGGGCGCTTTTCTGCCTGTGTG
ACTCGTGGGGGATTCTGGTAACAACTCCACTGGCAGGCGCGTCGAGCAAG
CAACTCGTGCAAAATCTTCCGGTAGGCCCGGGAGGGTGGGGGGAAAGGTA
TACCGGCGGCGGAGGCTGGGGCGGCGGGTGGTTGCTGTCACACAACGCTC
TCCCACGCGAACAAAAATCAAGTCCCTGTGTACACTTCATCCTGCCTAAC
AACATGTTGGCTGTTGGCTGTACTAACTCGTGACAACGAAGGTCATTCTT
TCCTGGGCTTTGTTTGCTCTTTCATTTACACGCGGCTTGGCATCTTCGAC
ATTTTCACACCTCCTCGACCCGCGCCCAATAGCCTCTCACCACACGTCAC
GCATGAATGTAAAACATCTATCCATCCATCGGTCGTTTTTCTTTCAGGCG
CACAAGCTCTCCCGAAAATCGCGTCCAACGCCGCCTACTCCGCCGTCGAG
ACTACGGGTGTACGAGGGTGACGGGAGAAGAGGTGGCGGCGGCGGCGGTG
AACCGAGCTTTCCGTCCTTGTTTGCCGCCGCGAGGACGTCGGCGAGCCTC
CCGGCGGGGAGCCCCGCGGCTGCCACCGCCGACGGCGTGGGTGGGGCTAG
GGCGGCGACGACGACCCCTGCCGTTCCACCTGCGCACACGCGCACCCGCT
CGGGCAGCAGCAGCAGCAGCAGCGTCAGCGCCAGCGGCAGCGCCTACAGC
GGCGGACCGCCTCACGACGAAGCCTTCCCTTTCTTGCCTTCCCAACACGT
CGGCCAGCGGCCATCGCGGTCGTCTGCGACAGCAAGTTCGCTTGGGAATG
GCCAACGGAGCGCCACCGCCGGGGGCGGCGGTGGCGGAGGCGGAGGGGGC
TTGCCCCGGGGGCGAGAGCTGAGAAGGCTGGCGAAGAAGATCGGCGCTCT
TTTGAGAGACTTCTCGCCGTCTTCGAGCCTGGAAGCGTTTGAGGTGGAGG
AGGCTCGCCTCCGGCTCTGGGTGAGGGGTTGCGCACGGGGAAGATGGTGC
TTGTCGCCTTATCGGGGTGCTTGCCGTGGCTGTAGTGGTAGCCAGAGCTT
AGGGCTCTCTCGAAGTTCCTGCAGCACGCACGCCATCCATGCTTACGTGT
TCAAACCCTTTGCCTGTGCTCCTCGTATCGCGTGACGGGGGGGGCGTCAC
AGCGTTTTCGTTTTTGTTTCGTGGGCCAAACGATGGGCCCGGCGATGGTT
ACGTTTCGGAGAGGGAGAGGGACAAGGTACAATGTGTGAGCCCGACGGGT
GTGGTGTGCGCGATTCCCAGGCCTAAGAGACGTGGAGAGTGGAGAGGCGT
GTGCGGGCGATACAGAGCTGCATTCTTCTGAAAACTCCATGCACCGCTTG
CTTTCACGCGCTGAGCATGTGGTGCCACCTCCCTCTCCCCGGCAGTAGAG
TTGAAAGCCCAGTTGCGGCATCAGGGTGCCCCGCGGAAAACGTCTCCCTC
CCTCCGCCCGTCGTTGCCCGTTCCATGGATTTTCCGTCACCCCCCCAACG
GTACTACCAGCCCTTCGTCAGCCTCAGCCGACTACTGTAGATCTGAGGTG
CCGTGACACGAGATAGATCTCCGTAGACCTTTGATGGGTGTGCTGTGCGC
GTTTCCCAGACCTAAGAGACGTGGAGAGGCTTGTGCGGCCGATACAGAGC
TGCACTCCTCTGGAAACTCCATGCACCACTTGCTTTCACGCGCTGAGCAT
GTGGTGCCACCTCCCCCTCCCCGGCAGTAGAGTTGAAAGCCCAGTTTCGG
CATCAGGGTGCCCCGCGGAAAACGTCTCCCTCCCTCCGCCCGTCGTTGCC
CGTTCCATGGATTTCCCGTCACCCCCTCAACGGTAGTACCAGCGCTTCGT
CAGCCTCAGCCGACTACTGTAGATCTGAGGTGCCGTGACACGCGACAGAT
CTCCGTAGACCTTTAGGCTAGAAGGCCGTATTCTGCTATGCATATCACTT
CCAATATCATCACACAGTGGTGGTGGCAGCAACATCAGCCACGCAACCAA
CCCTACCCCTCTCCACGAGCACCACGGCCTAACAAAAGCACTCCCATCGA
TCGCCGCCGTAGTATGTTTTCCTCTCGTCTGGTAGTGGACCCTTTCGAAA
CATGTTCTCTATGTGTTTCTTGTCCTGCCCTCCCCCCTCCCAATGATCTA
CCGGCTACGGACTGCCTTTACATGATCATCCTCCCCCCGATCTCCTCCGC
CCGTTTCTGATCAATCCTCTCAGGTGGCTGCCAACATCATGCGTTCGCGT
GCCCTGTCCAAGGCCACCCGCTCGGGGGCGCGGCCCCTTCTCTTTCTCTC
GTCCAAAGGCATCCCAAACCGGCACGAGATCGTCCGCGCCTTCTCGGAGT
CGGCGGGGACCAACATCGTTGGACGGGACGGCGACTCTGGCTCCTGTGGT
AGCGGCGGCGGCGGCGGCCGCGATTGCAGCAACGGCAGTTGCAGCGGCGG
GGGCGACGACGGCGATAGAGGACGAGCGGGAGGGTGGCGGCGGTGGGGAG
GGACGGCGACAGTTGGGGCCGGGAGAGCGGCGGCGGCGGCGGCGGCGGCG
GCTGTGGGAAGGCGGAGGCTAGACGAGCTCGACGCGGGGTCGAGGCGGCG
CGGGCGGCGTTGGCTGTTGACCCTGGCGCGGTTCATGGCGAGGCCCCGGG
AGTTCGAGCTTAGGAGGGCTGCCGCCGTCCGGGCCTTCACGCCCCAGAAG
TTTCGGCAGGAGTGGGAGCTGTTCTGGGAGCTGGTGGACCCGGTCTTCGA
TGGGTTGGAGAAGACGACGAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15931:696..3767-

>mRNA_Ecto-sp13_S_contig15931.4354.1 ID=mRNA_Ecto-sp13_S_contig15931.4354.1|Name=mRNA_Ecto-sp13_S_contig15931.4354.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1203bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15931:696..3767- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGAGGTTAGTGTCCAAGCCGGAGGAGGGCGGCGGGACTCGGCAGGA
GTGGCTCGACTGCCTTCGGGAGATGGTGGAGGCGCACAAGCTCTCCCGAA
AATCGCGTCCAACGCCGCCTACTCCGCCGTCGAGACTACGGGTGTACGAG
GGTGACGGGAGAAGAGGTGGCGGCGGCGGCGGTGAACCGAGCTTTCCGTC
CTTGTTTGCCGCCGCGAGGACGTCGGCGAGCCTCCCGGCGGGGAGCCCCG
CGGCTGCCACCGCCGACGGCGTGGGTGGGGCTAGGGCGGCGACGACGACC
CCTGCCGTTCCACCTGCGCACACGCGCACCCGCTCGGGCAGCAGCAGCAG
CAGCAGCGTCAGCGCCAGCGGCAGCGCCTACAGCGGCGGACCGCCTCACG
ACGAAGCCTTCCCTTTCTTGCCTTCCCAACACGTCGGCCAGCGGCCATCG
CGGTCGTCTGCGACAGCAAGTTCGCTTGGGAATGGCCAACGGAGCGCCAC
CGCCGGGGGCGGCGGTGGCGGAGGCGGAGGGGGCTTGCCCCGGGGGCGAG
AGCTGAGAAGGCTGGCGAAGAAGATCGGCGCTCTTTTGAGAGACTTCTCG
CCGTCTTCGAGCCTGGAAGCGTTTGAGGTGGAGGAGGCTCGCCTCCGGCT
CTGGGTGGCTGCCAACATCATGCGTTCGCGTGCCCTGTCCAAGGCCACCC
GCTCGGGGGCGCGGCCCCTTCTCTTTCTCTCGTCCAAAGGCATCCCAAAC
CGGCACGAGATCGTCCGCGCCTTCTCGGAGTCGGCGGGGACCAACATCGT
TGGACGGGACGGCGACTCTGGCTCCTGTGGTAGCGGCGGCGGCGGCGGCC
GCGATTGCAGCAACGGCAGTTGCAGCGGCGGGGGCGACGACGGCGATAGA
GGACGAGCGGGAGGGTGGCGGCGGTGGGGAGGGACGGCGACAGTTGGGGC
CGGGAGAGCGGCGGCGGCGGCGGCGGCGGCGGCTGTGGGAAGGCGGAGGC
TAGACGAGCTCGACGCGGGGTCGAGGCGGCGCGGGCGGCGTTGGCTGTTG
ACCCTGGCGCGGTTCATGGCGAGGCCCCGGGAGTTCGAGCTTAGGAGGGC
TGCCGCCGTCCGGGCCTTCACGCCCCAGAAGTTTCGGCAGGAGTGGGAGC
TGTTCTGGGAGCTGGTGGACCCGGTCTTCGATGGGTTGGAGAAGACGACG
AAG
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