mRNA_Ecto-sp13_S_contig1593.4352.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1593.4352.1
Unique NamemRNA_Ecto-sp13_S_contig1593.4352.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1593.4352.1 vs. uniprot
Match: D7G748_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G748_ECTSI)

HSP 1 Score: 338 bits (868), Expect = 1.010e-114
Identity = 225/262 (85.88%), Postives = 228/262 (87.02%), Query Frame = 1 
Query:    1 MSHGTCPEGMECACCFDDIEGGTDGNYVEYRTGEGKEWRPSLFCKMCIGVLIKSQWSIFEDTLAKATCKAQQKRMLGEGPPTHVHDKTALKCEEGESVHSLWFVGDEGGEPKIQSALLEGAPQGEDRQIWWDEKLAFQFDEDXXXXXVEAXXXXXXXXXXXXXXXXXVPGAPXXXXXXXXXXXXXXXXXXXXXXXXXXGEGTETAAASPQAARAATAAPPVAASEEVTEAVAAPSKMDVEGGEGVSPPAAPVTASAPAIPLG 786
            M+HGTCPEGMECACCFDDIEGGTDGNYVEYRTGEGKEWRPS FCKMCIGVLIKSQWSI+EDTLAKATCKAQQKRMLGEGPPTHVHDKTALKCEEGESVHSLWFVGDEGGEPKIQSALLEGAPQGE RQIWWDEKLAFQFDEDXXXXX   XXXXXXXXXXXXXX   VPGAP XXXXXXXXXXXXXXXXXXXXXXXXX                     PVAA  EVTEA AAPSKMDVEG +GVSPPAAPVTASAPAIPLG
Sbjct:    1 MNHGTCPEGMECACCFDDIEGGTDGNYVEYRTGEGKEWRPSFFCKMCIGVLIKSQWSIYEDTLAKATCKAQQKRMLGEGPPTHVHDKTALKCEEGESVHSLWFVGDEGGEPKIQSALLEGAPQGEARQIWWDEKLAFQFDEDXXXXXXXXXXXXXXXXXXXXXXP--VPGAPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPVAAGAEVTEADAAPSKMDVEGEKGVSPPAAPVTASAPAIPLG 260
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BLAST of mRNA_Ecto-sp13_S_contig1593.4352.1 vs. uniprot
Match: A0A6V1S1X6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1S1X6_HETAK)

HSP 1 Score: 146 bits (368), Expect = 2.020e-40
Identity = 65/141 (46.10%), Postives = 93/141 (65.96%), Query Frame = 1 
Query:    1 MSHGTCPEGMECACCFDDIEGGTDGNYVEYRTGEGKEWRPSLFCKMCIGVLIKSQWSIFEDTLAKATCKAQQKRMLGEGPPTHVHDKTALKCEEGESVHSLWFVGDEGGEPKIQSALLEGAPQGEDRQIWWDEKLAFQFDE 423
            MSH +  +G EC CC+DD++     NYVEY+  E  EW P+ FC+ C+  L+ +Q+ I+ + L  + CKA+Q+RML EGPP +V DKTAL+C +G  V  LW+  D+       SA L+G+ +G++RQ WWDEK AF F+E
Sbjct:    1 MSHNSPEDGAECLCCYDDVD---SSNYVEYKASEDGEWLPAKFCQTCVNQLLANQYHIWVNKLETSNCKAEQRRMLKEGPPVNVKDKTALECPDGSEVFRLWYSSDQAE----HSAKLDGSLEGDERQAWWDEKKAFLFEE 134
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BLAST of mRNA_Ecto-sp13_S_contig1593.4352.1 vs. uniprot
Match: A0A6V1S1X0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1S1X0_HETAK)

HSP 1 Score: 146 bits (368), Expect = 1.640e-39
Identity = 65/141 (46.10%), Postives = 93/141 (65.96%), Query Frame = 1 
Query:    1 MSHGTCPEGMECACCFDDIEGGTDGNYVEYRTGEGKEWRPSLFCKMCIGVLIKSQWSIFEDTLAKATCKAQQKRMLGEGPPTHVHDKTALKCEEGESVHSLWFVGDEGGEPKIQSALLEGAPQGEDRQIWWDEKLAFQFDE 423
            MSH +  +G EC CC+DD++     NYVEY+  E  EW P+ FC+ C+  L+ +Q+ I+ + L  + CKA+Q+RML EGPP +V DKTAL+C +G  V  LW+  D+       SA L+G+ +G++RQ WWDEK AF F+E
Sbjct:    1 MSHNSPEDGAECLCCYDDVD---SSNYVEYKASEDGEWLPAKFCQTCVNQLLANQYHIWVNKLETSNCKAEQRRMLKEGPPVNVKDKTALECPDGSEVFRLWYSSDQAE----HSAKLDGSLEGDERQAWWDEKKAFLFEE 134
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BLAST of mRNA_Ecto-sp13_S_contig1593.4352.1 vs. uniprot
Match: A0A835Z5F2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5F2_9STRA)

HSP 1 Score: 135 bits (339), Expect = 3.340e-36
Identity = 63/139 (45.32%), Postives = 85/139 (61.15%), Query Frame = 1 
Query:    7 HGTCPEGMECACCFDDIEGGTDGNYVEYRTGEGKEWRPSLFCKMCIGVLIKSQWSIFEDTLAKATCKAQQKRMLGEGPPTHVHDKTALKCEEGESVHSLWFVGDEGGEPKIQSALLEGAPQGEDRQIWWDEKLAFQFDE 423
            H    EG EC  C DDI+      YVEYR G G  W+P  FC  C+  L+ +QW  + D LAKA+CKA+Q+R+L  GPP  ++D+  L C EG+ V  LW+    G + +  SA L GA +G+ R+ WWDEKL F+F+E
Sbjct:    7 HSAPAEGKECMVCMDDID---MEKYVEYRVGAGGPWKPCGFCVTCVETLLATQWQKYVDQLAKASCKAEQRRLLDRGPPITIYDRNGLPCPEGQDVDMLWY----GRDKQEYSAKLAGALEGQARRDWWDEKLQFKFEE 138
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1593.4352.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G748_ECTSI1.010e-11485.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6V1S1X6_HETAK2.020e-4046.10Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6V1S1X0_HETAK1.640e-3946.10Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A835Z5F2_9STRA3.340e-3645.32Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1593contigEcto-sp13_S_contig1593:6617..9286 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeApicomplexa
Stop1
Start1
Seed ortholog score120.9
Seed ortholog evalue8.7e-25
Seed eggNOG ortholog5827.XP_004224035.1
Model size789
Hectar predicted targeting categoryother localisation
Exons5
EggNOG OGs2E3BH@1,2SAF7@2759,3KAZ5@422676,3YAPW@5794,3YZQS@5819
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_011060.1
Cds size789
Best tax levelHaemosporida
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462841.8894093-CDS-Ecto-sp13_S_contig1593:6616..67191681462841.8894093-CDS-Ecto-sp13_S_contig1593:6616..6719Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1593 6617..6719 +
1681462841.9093084-CDS-Ecto-sp13_S_contig1593:7611..77151681462841.9093084-CDS-Ecto-sp13_S_contig1593:7611..7715Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1593 7612..7715 +
1681462841.9258223-CDS-Ecto-sp13_S_contig1593:7897..79451681462841.9258223-CDS-Ecto-sp13_S_contig1593:7897..7945Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1593 7898..7945 +
1681462841.9367683-CDS-Ecto-sp13_S_contig1593:8427..85081681462841.9367683-CDS-Ecto-sp13_S_contig1593:8427..8508Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1593 8428..8508 +
1681462841.947624-CDS-Ecto-sp13_S_contig1593:8833..92861681462841.947624-CDS-Ecto-sp13_S_contig1593:8833..9286Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1593 8834..9286 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1593.4352.1prot_Ecto-sp13_S_contig1593.4352.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1593 6617..9286 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1593.4352.1

>prot_Ecto-sp13_S_contig1593.4352.1 ID=prot_Ecto-sp13_S_contig1593.4352.1|Name=mRNA_Ecto-sp13_S_contig1593.4352.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=263bp
MSHGTCPEGMECACCFDDIEGGTDGNYVEYRTGEGKEWRPSLFCKMCIGV
LIKSQWSIFEDTLAKATCKAQQKRMLGEGPPTHVHDKTALKCEEGESVHS
LWFVGDEGGEPKIQSALLEGAPQGEDRQIWWDEKLAFQFDEDEDEDDVEA
GGNTTAATTVAASTPPPVPGAPSPTPVPPAPATDSPAAASATSNTAQAGE
GTETAAASPQAARAATAAPPVAASEEVTEAVAAPSKMDVEGGEGVSPPAA
PVTASAPAIPLG*
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mRNA from alignment at Ecto-sp13_S_contig1593:6617..9286+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1593.4352.1 ID=mRNA_Ecto-sp13_S_contig1593.4352.1|Name=mRNA_Ecto-sp13_S_contig1593.4352.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2670bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1593:6617..9286+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGTCACGGAACATGCCCGGAGGGTATGGAGTGCGCATGCTGCTTCGA
TGACATCGAGGGTGGCACCGATGGAAACTACGTGGAGTACAGGACTGGCG
AAGGTGAGGACCACCGCTGTATGATGCAAACTACAGCTACTCACTTTTTC
AGCTGCTTTACCGCTGTAGGTGATACCACCCTCTCCCTCGCCCGATTTTC
AAAGGTCGTTTGCCCCGCAACGAAGAGGATGTTTGAGTCAATCCATACAA
TTTTTTAACTTCTCTATCGTTGACACCACTCCTTCTATCTTGCGGAGTAA
TCGAGGTTTGAAAATCGATCCAGGGGGTGTGATATCTTGTGTCAACCTCT
GGTATTGTTGATGCGCATGAAGGGACCGCGGCGGAAATCAGGCAGCTTGT
CTGTCACGCGGTCTTTGTACACGAAAGTATATCCACCTGCCTGCCATACT
CTAGAGGCGATCTCTAGTCAATGGTGTACCCGACGCAGTCAGAGTGAAAA
TAGTTGCACAGGTTGTAACTCGCTGCCACAACAGCAGCTGTCGTGGCGTC
TGTGTGTAGCTGGATGCTACCGAGCGCCTTGCCGGTGCGGACATGGCAGC
ATCACGTACTGCTTGCATGTGGCAATATCTACCAGAGCGCTAGTGCCGAA
TCGCTTTCCAAGCACCGACCATCGCTACACTAGCGAAGCATGGAACCTCT
AATTTACGTCGGTGTCCCACCTTCGCAGTCCTGTGCCAACGCTGTTCTCT
CAAACCGAACACGGAGAACCGATGTTTATGTGTTGGGAGGTCTAGAGACA
TTGCTGCCCACTCTCATCTCTCTCCCGCACACACCTCTCCCCCTCTTTTC
CTCTCTCTGTTTTGGTACTTGCTGGTCCGCCCGACGATGCATGTGACTCC
GTCTTTCGGCAAGGTGCATTCCTGTCGTTCTTTCTCTGTCAATTTCGTTG
TTGGCACACCCATATTTTGCTGTCTCTGTCTGTCACACAACGCAGGCAAG
GAATGGCGCCCATCGTTGTTTTGCAAGATGTGCATCGGGGTTCTGATTAA
GAGTCAGTGGTCCATCTTCGAGGACACTTTGGCCAAGGCTACGTGCAAGG
TGTGTTACAGGTGGTCTGCCTTGTACTGAAAGTTCTAGCCGGCTGCGCAC
AACATGCTCAGCTTTCTTCCAACCGCAAGAGCACACGTTGTTCGGCTTCC
CCTGTTGGTAACTCCTTCCGTAGGTCGGAATATATCCTGAAAGGCGTCAA
TCCCTCCTCTCCTTGTTCCGCAATGATCCAGGCGCAGCAGAAGCGAATGC
TAGGGGAGGGGCCTCCAACGCACGTACACGTGAGTATCGCACTCGCGTTT
ATCGAGTACCAGAGTATGGGGTGGCGGAGGAATGCGTGAAAAACGTGGCG
ATACTCGCACACGTTTCCCTGTGCGGCTTATAGCTGCCCCGTTTTCTCGG
GGGATGGCGTGCTGATGTGGCGTTGTGCCGTCACAGAAAGAAAGGGTCGC
TGACGAAGGCTCGTGTGTTCTCTGGGTCCATGCGCCCAAGAGTGTTGCGT
CTGCGATGATGTTGAGACGTTGAGCTGTTGTCTTCGCGTACAGAGAAGGG
TGTGGTGCGGAGCTCGCCGGCATGGGAGCTTCAGGGTGGGTCTTACGTCA
TGAGGACTCAGCTGGTGGCCCATGAGCATTGCGACACGTCGAAATTGTCA
ACACCTGAAACGCCGTGGGCATACTTTCGCTTTTGCCCAAAGGGGGAGGT
AAGTCGCTTTGTTGCACAACGTGCCGCCCTACTGAGTGACACCTCGCCTT
TTCCCCAACAGGACAAAACAGCTCTGAAGTGTGAAGAGGGCGAGAGCGTG
CACTCGTTGTGGTTTGTTGGAGACGAGGGCGGCGAGCCCAAGGTAAGCCT
CTCGCAAGCCGCCTCTTTCCGAGTGGTTACTCAACAACATTAGATTGGAT
GCGACCATCGAATGGCTCCCAACGACTTGATCTTGATTTTGAGTGATGTT
GCAGATGTTGCAATTTTGGTCAAGAAGAGGAGTAGTGGTTCCGGGCTTTC
ACCTGTTCAGAGAATCAAGACAAGATCGCGGAATAGTCAGCGGTATATTT
ATGAGAGAGACTCCATGCAGGACCCTTGGTGTGACGATTCCGTGTACCAG
TCTGAACTGCTGCTTCGCTGCGCCTTCGTCCGTGTTGGCATACCGCTGTT
GTTGACCACACCTCAAGATTCAATCTGCTCTGCTAGAAGGGGCTCCGCAG
GGTGAAGACCGACAGATCTGGTGGGACGAGAAGCTCGCGTTTCAGTTCGA
CGAGGACGAAGACGAAGATGACGTAGAGGCGGGGGGAAACACCACCGCTG
CCACGACCGTAGCTGCCTCGACACCACCCCCGGTGCCTGGTGCGCCATCT
CCTACCCCCGTTCCTCCTGCACCTGCTACTGACTCCCCTGCTGCTGCTTC
GGCTACCAGCAATACTGCGCAAGCAGGAGAGGGTACAGAAACCGCGGCGG
CGAGCCCACAAGCAGCGCGGGCGGCAACAGCGGCACCACCGGTTGCTGCT
AGCGAAGAGGTGACCGAGGCAGTTGCGGCTCCGTCGAAGATGGACGTCGA
GGGAGGGGAAGGGGTCTCGCCGCCTGCCGCGCCAGTGACCGCCTCTGCAC
CTGCGATCCCATTAGGCTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1593:6617..9286+

>mRNA_Ecto-sp13_S_contig1593.4352.1 ID=mRNA_Ecto-sp13_S_contig1593.4352.1|Name=mRNA_Ecto-sp13_S_contig1593.4352.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=789bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1593:6617..9286+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGTCACGGAACATGCCCGGAGGGTATGGAGTGCGCATGCTGCTTCGA
TGACATCGAGGGTGGCACCGATGGAAACTACGTGGAGTACAGGACTGGCG
AAGGCAAGGAATGGCGCCCATCGTTGTTTTGCAAGATGTGCATCGGGGTT
CTGATTAAGAGTCAGTGGTCCATCTTCGAGGACACTTTGGCCAAGGCTAC
GTGCAAGGCGCAGCAGAAGCGAATGCTAGGGGAGGGGCCTCCAACGCACG
TACACGACAAAACAGCTCTGAAGTGTGAAGAGGGCGAGAGCGTGCACTCG
TTGTGGTTTGTTGGAGACGAGGGCGGCGAGCCCAAGATTCAATCTGCTCT
GCTAGAAGGGGCTCCGCAGGGTGAAGACCGACAGATCTGGTGGGACGAGA
AGCTCGCGTTTCAGTTCGACGAGGACGAAGACGAAGATGACGTAGAGGCG
GGGGGAAACACCACCGCTGCCACGACCGTAGCTGCCTCGACACCACCCCC
GGTGCCTGGTGCGCCATCTCCTACCCCCGTTCCTCCTGCACCTGCTACTG
ACTCCCCTGCTGCTGCTTCGGCTACCAGCAATACTGCGCAAGCAGGAGAG
GGTACAGAAACCGCGGCGGCGAGCCCACAAGCAGCGCGGGCGGCAACAGC
GGCACCACCGGTTGCTGCTAGCGAAGAGGTGACCGAGGCAGTTGCGGCTC
CGTCGAAGATGGACGTCGAGGGAGGGGAAGGGGTCTCGCCGCCTGCCGCG
CCAGTGACCGCCTCTGCACCTGCGATCCCATTAGGCTAG
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