mRNA_Ecto-sp13_S_contig15922.4349.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15922.4349.1
Unique NamemRNA_Ecto-sp13_S_contig15922.4349.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15922.4349.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15922contigEcto-sp13_S_contig15922:1249..2592 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1344
Hectar predicted targeting categorysignal peptide
Exons1
Cds size858
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462841.692489-UTR-Ecto-sp13_S_contig15922:1248..13721681462841.692489-UTR-Ecto-sp13_S_contig15922:1248..1372Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15922 1249..1372 +
1681462841.7157397-UTR-Ecto-sp13_S_contig15922:2230..25921681462841.7157397-UTR-Ecto-sp13_S_contig15922:2230..2592Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15922 2231..2592 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462841.70387-CDS-Ecto-sp13_S_contig15922:1372..22301681462841.70387-CDS-Ecto-sp13_S_contig15922:1372..2230Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15922 1373..2230 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15922.4349.1prot_Ecto-sp13_S_contig15922.4349.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15922 1373..2230 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15922.4349.1

>prot_Ecto-sp13_S_contig15922.4349.1 ID=prot_Ecto-sp13_S_contig15922.4349.1|Name=mRNA_Ecto-sp13_S_contig15922.4349.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=286bp
MASFFFLNFFLVCCSRGIAVSIFCFFLAVLAAHQPSPSRHLRCVTFGVAL
GRKRLRRRQRVLFLIISSSVSFFCPEIIHCCVGGQDVASGAVTHPPWRSM
QIVKAPRALGICAVRIIRGLVGVVFVVPALFLVGGCGRSRPWGFRGCHRG
GVGQAGFPSSVRDVRPHGWKGWKGHMWGYICPRPRLNVGRKWTATWRQWT
SSPWLTPFPSWTRRWARASPHTCLLRPFYQVKNPPRRCRHPFLESGHAIR
YVGRSIFSTIEADFRAMSGRTPNSSECRAFSSGRR*
back to top

mRNA from alignment at Ecto-sp13_S_contig15922:1249..2592+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15922.4349.1 ID=mRNA_Ecto-sp13_S_contig15922.4349.1|Name=mRNA_Ecto-sp13_S_contig15922.4349.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1344bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15922:1249..2592+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGGAGTTGGTGTACCTGATACTTGTGACGGTCTTGGTGTGTATCCACGA
GTTGTTTCTGTAGTACTGTAGGGTGAGTCTTTCCCACGGCAAGGTCTTCT
TGTGTTGGCGGTGATTTGCGAACTATGGCCTCGTTTTTCTTTTTGAATTT
TTTTTTGGTATGTTGCTCTCGGGGTATCGCAGTTTCTATTTTTTGTTTTT
TCCTCGCAGTGCTTGCCGCCCACCAGCCAAGCCCAAGTCGGCATCTGCGC
TGCGTTACCTTTGGCGTCGCTCTGGGTAGAAAACGGCTAAGACGACGCCA
ACGGGTGCTATTCCTGATCATTTCGAGTTCGGTGTCCTTTTTTTGCCCTG
AAATCATCCACTGCTGTGTAGGCGGGCAGGACGTTGCCTCTGGTGCTGTT
ACCCACCCCCCTTGGCGAAGCATGCAAATTGTAAAAGCGCCAAGAGCTCT
GGGTATTTGTGCAGTAAGAATCATCCGCGGGCTTGTCGGCGTTGTGTTTG
TCGTCCCTGCTCTCTTTTTGGTGGGTGGTTGCGGGCGTAGCAGACCGTGG
GGGTTCCGTGGTTGCCACCGAGGCGGCGTGGGACAAGCCGGGTTTCCCTC
CTCCGTCCGCGATGTTCGTCCTCACGGGTGGAAGGGGTGGAAGGGACACA
TGTGGGGCTATATTTGCCCGCGTCCCCGTCTAAACGTCGGAAGGAAGTGG
ACTGCCACCTGGCGCCAGTGGACTTCAAGCCCCTGGCTGACTCCCTTCCC
GAGTTGGACGAGGAGGTGGGCACGTGCGAGTCCTCACACGTGTCTCCTCC
GCCCCTTCTACCAGGTGAAGAACCCTCCCCGCCGTTGCAGACATCCGTTT
CTCGAATCGGGACACGCGATCCGCTATGTAGGCCGCTCCATTTTTTCAAC
TATCGAGGCTGACTTTAGGGCCATGTCTGGACGTACGCCAAACTCATCCG
AATGCCGTGCCTTTTCAAGTGGTCGTCGATAGCAACGGGCGTGTCGGGCC
AAGGCCAAGTATCCCGGTCGAGGGGGGGTGCACTCGGTTGGGTACCCCCC
TCTACCGAGTTGCTTCGCGTGGGGCGACAGGCCAGTGATGTCGTCTGCAC
TTCGAAAAAAAAATGAGGCATTTTGGACGACGCGGTCGTAGGAAGTTGAA
GATAACCCTTGAAGTCAGCCTCGATGGCAGAATTATGTAGCAGCGTGAGC
GTGTGTGAGCAAGAAATCAGCGCGCCGGCTTGGTAGGTTGAGACTTCTCG
TACAGAACGTGAGCGGGTGTCATCGCACGAGCACATGTACAGCAGTGCCT
GTGCCTAGGGGATGATAGTCGACCACGGATGAATGTCCGACAGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15922:1249..2592+

>mRNA_Ecto-sp13_S_contig15922.4349.1 ID=mRNA_Ecto-sp13_S_contig15922.4349.1|Name=mRNA_Ecto-sp13_S_contig15922.4349.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=858bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15922:1249..2592+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCTCGTTTTTCTTTTTGAATTTTTTTTTGGTATGTTGCTCTCGGGG
TATCGCAGTTTCTATTTTTTGTTTTTTCCTCGCAGTGCTTGCCGCCCACC
AGCCAAGCCCAAGTCGGCATCTGCGCTGCGTTACCTTTGGCGTCGCTCTG
GGTAGAAAACGGCTAAGACGACGCCAACGGGTGCTATTCCTGATCATTTC
GAGTTCGGTGTCCTTTTTTTGCCCTGAAATCATCCACTGCTGTGTAGGCG
GGCAGGACGTTGCCTCTGGTGCTGTTACCCACCCCCCTTGGCGAAGCATG
CAAATTGTAAAAGCGCCAAGAGCTCTGGGTATTTGTGCAGTAAGAATCAT
CCGCGGGCTTGTCGGCGTTGTGTTTGTCGTCCCTGCTCTCTTTTTGGTGG
GTGGTTGCGGGCGTAGCAGACCGTGGGGGTTCCGTGGTTGCCACCGAGGC
GGCGTGGGACAAGCCGGGTTTCCCTCCTCCGTCCGCGATGTTCGTCCTCA
CGGGTGGAAGGGGTGGAAGGGACACATGTGGGGCTATATTTGCCCGCGTC
CCCGTCTAAACGTCGGAAGGAAGTGGACTGCCACCTGGCGCCAGTGGACT
TCAAGCCCCTGGCTGACTCCCTTCCCGAGTTGGACGAGGAGGTGGGCACG
TGCGAGTCCTCACACGTGTCTCCTCCGCCCCTTCTACCAGGTGAAGAACC
CTCCCCGCCGTTGCAGACATCCGTTTCTCGAATCGGGACACGCGATCCGC
TATGTAGGCCGCTCCATTTTTTCAACTATCGAGGCTGACTTTAGGGCCAT
GTCTGGACGTACGCCAAACTCATCCGAATGCCGTGCCTTTTCAAGTGGTC
GTCGATAG
back to top