mRNA_Ecto-sp13_S_contig15919.4346.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15919.4346.1
Unique NamemRNA_Ecto-sp13_S_contig15919.4346.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig15919.4346.1 vs. uniprot
Match: D8LDE4_ECTSI (Sept1, septin GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDE4_ECTSI)

HSP 1 Score: 340 bits (871), Expect = 7.630e-114
Identity = 167/181 (92.27%), Postives = 173/181 (95.58%), Query Frame = 1
Query:    1 MPPNTTMATDSGMSSPVVGASVRVPGPPQQRQAPDQLRVMVAGEIGLLTTTFLNNIFRHLNRGENPMDQAATVVQAAGRGDFGNGKTLSIEEREFDYKTERGQDYKFFLVDTPGYGDHVNVSQSFQPVVDYITNGNKRYLAEVRRGNETPEKDGRTDVCIYFIAAHRCKPIDIEYMKQLSK 543
            MPPNTTMATDSGM SPVVGASVRVPGPPQ+ QAPDQLRVMVAGE GL  TTFLNNIFRHLNRGENPMDQAATVVQAAGRG F NGKTLSIEEREFDYKTERGQDYKFFLVDTPGYGDHVNVSQSFQPVVDYI NGN+RYLAEVR+GNETP++DGRTDVCIYFIAAHRCKPIDIEYMKQL+K
Sbjct:    1 MPPNTTMATDSGMDSPVVGASVRVPGPPQKSQAPDQLRVMVAGESGLGKTTFLNNIFRHLNRGENPMDQAATVVQAAGRGVFDNGKTLSIEEREFDYKTERGQDYKFFLVDTPGYGDHVNVSQSFQPVVDYIMNGNRRYLAEVRKGNETPKEDGRTDVCIYFIAAHRCKPIDIEYMKQLTK 181          
BLAST of mRNA_Ecto-sp13_S_contig15919.4346.1 vs. uniprot
Match: A0A6H5JBY2_9PHAE (Septin-type G domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBY2_9PHAE)

HSP 1 Score: 337 bits (865), Expect = 9.820e-113
Identity = 169/184 (91.85%), Postives = 173/184 (94.02%), Query Frame = 1
Query:    1 MPPNTTMATDSGMSSPVVGASVRVPGPPQQRQAPDQLRVMVAGEIGL---LTTTFLNNIFRHLNRGENPMDQAATVVQAAGRGDFGNGKTLSIEEREFDYKTERGQDYKFFLVDTPGYGDHVNVSQSFQPVVDYITNGNKRYLAEVRRGNETPEKDGRTDVCIYFIAAHRCKPIDIEYMKQLSK 543
            MPP+T MA+DSGM SPVVGASVRVPGPPQQ QAPDQLRVMVAGE GL   + TTFLNNIFRHLNRGENPMDQAATVVQAAGRG FGNGKTLSIEEREFDYKTERGQDYKFFLVDTPGYGDHVNVS SFQPVVDYI +GNKRYLAEVRRGNETPEKDGRTDVCIYFIAAHRCKPIDIEYMKQLSK
Sbjct:    1 MPPSTAMASDSGMGSPVVGASVRVPGPPQQSQAPDQLRVMVAGESGLGKAMRTTFLNNIFRHLNRGENPMDQAATVVQAAGRGVFGNGKTLSIEEREFDYKTERGQDYKFFLVDTPGYGDHVNVSLSFQPVVDYIMSGNKRYLAEVRRGNETPEKDGRTDVCIYFIAAHRCKPIDIEYMKQLSK 184          
BLAST of mRNA_Ecto-sp13_S_contig15919.4346.1 vs. uniprot
Match: D7FUI7_ECTSI (Sept3, septin GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUI7_ECTSI)

HSP 1 Score: 319 bits (817), Expect = 1.360e-105
Identity = 161/191 (84.29%), Postives = 166/191 (86.91%), Query Frame = 1
Query:    1 MPPNTTMATDSGMSSPVVG----------ASVRVPGPPQQRQAPDQLRVMVAGEIGLLTTTFLNNIFRHLNRGENPMDQAATVVQAAGRGDFGNGKTLSIEEREFDYKTERGQDYKFFLVDTPGYGDHVNVSQSFQPVVDYITNGNKRYLAEVRRGNETPEKDGRTDVCIYFIAAHRCKPIDIEYMKQLSK 543
            MPPNTT+ TD  M+SPVVG           SVRVPGPPQQR  PDQLRVMVAGE GL  TTFLNNIFRHLNRGENPMDQAATVVQAAGRG FGNGKTL IEEREFDYKTERGQDYKFFLVDTPGYGDHVNVSQSFQPVV+Y+ NGNK YL EV +GNETPEKDGRTDVCIYFIAAHRCKPIDIEYMKQLSK
Sbjct:    1 MPPNTTVGTDPCMASPVVGDPQAKDGGNAPSVRVPGPPQQRPTPDQLRVMVAGESGLGKTTFLNNIFRHLNRGENPMDQAATVVQAAGRGVFGNGKTLRIEEREFDYKTERGQDYKFFLVDTPGYGDHVNVSQSFQPVVNYVMNGNKSYLEEVMKGNETPEKDGRTDVCIYFIAAHRCKPIDIEYMKQLSK 191          
BLAST of mRNA_Ecto-sp13_S_contig15919.4346.1 vs. uniprot
Match: D8LDE5_ECTSI (Sept2, septin GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDE5_ECTSI)

HSP 1 Score: 241 bits (615), Expect = 2.000e-75
Identity = 122/174 (70.11%), Postives = 138/174 (79.31%), Query Frame = 1
Query:   22 ATDSGMSSPVVGASVRVPGPPQQRQAPDQLRVMVAGEIGLLTTTFLNNIFRHLNRGENPMDQAATVVQAAGRGDFGNGKTLSIEEREFDYKTERGQDYKFFLVDTPGYGDHVNVSQSFQPVVDYITNGNKRYLAEVRRGNETPEKDGRTDVCIYFIAAHRCKPIDIEYMKQLSK 543
            A D    SP      R PG P +RQAP+QLRVMVAGE GL  TTFLNNIFRHLN+G+NPMDQ + V    G G FG+ KTL IEEREFD+ T  GQ YKFFLVDTPGYGDHVNV +SFQPVVD+I  G++RYLAE++RGN+TP +DGRTDVCI+FIAAHRCK IDIEYMKQLSK
Sbjct:    7 AFDGSFVSPSRQNGPRRPGDPVRRQAPNQLRVMVAGESGLGKTTFLNNIFRHLNQGQNPMDQGSVVHGQTG-GIFGHSKTLKIEEREFDHTTSGGQYYKFFLVDTPGYGDHVNVRKSFQPVVDFIIRGSRRYLAEIKRGNDTPSEDGRTDVCIHFIAAHRCKSIDIEYMKQLSK 179          
BLAST of mRNA_Ecto-sp13_S_contig15919.4346.1 vs. uniprot
Match: D7FUI5_ECTSI (Sept5, septin GTPase, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUI5_ECTSI)

HSP 1 Score: 204 bits (519), Expect = 6.820e-59
Identity = 98/132 (74.24%), Postives = 113/132 (85.61%), Query Frame = 1
Query:  148 TTFLNNIFRHLNRGENPMDQAATVVQAAGRGDFGNGKTLSIEEREFDYKTERGQDYKFFLVDTPGYGDHVNVSQSFQPVVDYITNGNKRYLAEVRRGNETPEKDGRTDVCIYFIAAHRCKPIDIEYMKQLSK 543
            TTFLNNIFRHLN+GE+PM+QA+ V    GR   G+ KTL IEER+FD+ T  GQ YKFFLVDTPGYGDHVNV +SFQPVVD+IT+G+++YL EV  GN+TP +DGRTDVCIYFIAAHRCKPIDIEYMKQLSK
Sbjct:    2 TTFLNNIFRHLNQGEDPMEQASVVRGQTGRV-LGHSKTLRIEERKFDHTTSDGQCYKFFLVDTPGYGDHVNVRKSFQPVVDFITSGSRKYLTEVMGGNDTPSEDGRTDVCIYFIAAHRCKPIDIEYMKQLSK 132          
BLAST of mRNA_Ecto-sp13_S_contig15919.4346.1 vs. uniprot
Match: A0A6H5JEJ7_9PHAE (Septin-type G domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEJ7_9PHAE)

HSP 1 Score: 191 bits (485), Expect = 5.290e-54
Identity = 89/126 (70.63%), Postives = 107/126 (84.92%), Query Frame = 1
Query:  166 IFRHLNRGENPMDQAATVVQAAGRGDFGNGKTLSIEEREFDYKTERGQDYKFFLVDTPGYGDHVNVSQSFQPVVDYITNGNKRYLAEVRRGNETPEKDGRTDVCIYFIAAHRCKPIDIEYMKQLSK 543
            +FRHLN+ +NPMDQA+ V    G G FG+ KTL IEEREFD+ T  GQ YKFFLVDTPGYGDHVNV ++FQPVVD+IT G++RYLAE++ GN+TP +DGR DVC+YFIAAHRCKPID+EY+KQLSK
Sbjct:    1 MFRHLNQWQNPMDQASVVHGQTG-GIFGHSKTLKIEEREFDHTTSDGQYYKFFLVDTPGYGDHVNVRKNFQPVVDFITRGSRRYLAEIKMGNDTPSEDGRADVCLYFIAAHRCKPIDMEYIKQLSK 125          
BLAST of mRNA_Ecto-sp13_S_contig15919.4346.1 vs. uniprot
Match: A0A1Y1ITX3_KLENI (Putative septin GTPase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1ITX3_KLENI)

HSP 1 Score: 87.4 bits (215), Expect = 8.230e-17
Identity = 60/165 (36.36%), Postives = 89/165 (53.94%), Query Frame = 1
Query:  103 DQLRVMVAGEIGLLTTTFLNNIFRHLNRGENPM-DQAAT-------VVQAAGRGDFGNGK-------TLSIEEREF--DYKTERGQDYKFFLVDTPGYGDHVNVSQSFQPVVDYITNGNKRYLAEVRRGNETPEKDGRTDVCI-YFIAAHRCKPIDIEYMKQLSK 543
            D  ++M+AGE GL  +TF+NNIF   N G   M D AA+       V+ A    D G+ +       TL+I++         ++  +  + +VDTPG+GD ++VS+S   V D++ + ++ Y           EK+     CI YFIA HR KPID+E+MKQLSK
Sbjct:   52 DSFKIMIAGESGLGKSTFINNIFSSYNGGRPIMPDHAASGETGGEAVLPAGVAPDDGSAEEGSLKPPTLAIDQSCVFATRNADQTMNITYRMVDTPGWGDDIDVSRSIARVTDFLLSCHRVYQERFTGQPYGVEKEDERVACILYFIAPHRIKPIDVEFMKQLSK 216          
BLAST of mRNA_Ecto-sp13_S_contig15919.4346.1 vs. uniprot
Match: A0A8C9SYP5_SCLFO (Septin-9-like n=12 Tax=Scleropages formosus TaxID=113540 RepID=A0A8C9SYP5_SCLFO)

HSP 1 Score: 85.9 bits (211), Expect = 2.800e-16
Identity = 50/149 (33.56%), Postives = 83/149 (55.70%), Query Frame = 1
Query:  106 QLRVMVAGEIGLLTTTFLNNIFRHLNRGENPMDQAATVVQAAGRGDFGNGKTLSIEEREFDYKTERGQDYKFFLVDTPGYGDHVNVSQSFQPVVDYITNGNKRYLAE-VRRGNETPEKDGRTDVCIYFI--AAHRCKPIDIEYMKQLSK 543
            +L +MV G+ GL  +T +N +F+      + + + +T+  A  R      KT+ I+    D + E+G   K  ++DTPG+GDH+N    +QP++ +I    +RYL E +    +T   D R   CIYFI    H  +P+D+E+M++LSK
Sbjct:  252 ELNIMVVGQSGLGKSTLMNTLFK------SKVSRRSTLASAEER----IPKTVEIKSISHDIE-EKGVRMKLTVIDTPGFGDHINNENCWQPIMRFINEQYERYLQEEININRKTRIPDSRVHCCIYFIPPTGHCLRPLDVEFMRRLSK 389          
BLAST of mRNA_Ecto-sp13_S_contig15919.4346.1 vs. uniprot
Match: A0A7S1X588_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1X588_9CHLO)

HSP 1 Score: 80.9 bits (198), Expect = 4.630e-16
Identity = 52/143 (36.36%), Postives = 76/143 (53.15%), Query Frame = 1
Query:  118 MVAGEIGLLTTTFLNNIFRHLNRGENPMDQAATVVQAAGRGDFGNGKTLSIEEREFDYKTERGQDYKFFLVDTPGYGDHVNVSQSFQPVVDYITNGNKR-YLAEVRRGNETPE-KDGRTDVCIYFIAAHRCKPIDIEYMKQLS 540
            MV GE G   TTF+ N+F     GE  + QA          +F           +   + ER + Y F + DTPGYGD +N++ +   +VDY+   N   Y AEV  G +  E +D R DVC+YF+AAHR KP+D++++  L+
Sbjct:    1 MVVGESGQGKTTFIQNMFMAYV-GEQDV-QAVADGSVTSMVEFMADPDRLCTRFQVANEDERVR-YHFSVQDTPGYGDDLNIANNIGVIVDYVARCNADFYAAEVEHGRQRSEPEDCRVDVCLYFVAAHRLKPVDVQFIAALA 140          
BLAST of mRNA_Ecto-sp13_S_contig15919.4346.1 vs. uniprot
Match: A0A7K7D621_PHEME (SEPT9 protein (Fragment) n=9 Tax=Neognathae TaxID=8825 RepID=A0A7K7D621_PHEME)

HSP 1 Score: 82.0 bits (201), Expect = 2.150e-15
Identity = 49/151 (32.45%), Postives = 81/151 (53.64%), Query Frame = 1
Query:  106 QLRVMVAGEIGLLTTTFLNNIFRHLNRGENPMDQAATVVQAAGRGDFGNGKTLSIEEREFDYKTERGQDYKFFLVDTPGYGDHVNVSQSFQPVVDYITNGNKRYLAE---VRRGNETPEKDGRTDVCIYFIAA--HRCKPIDIEYMKQLSK 543
            +  +MV G+ GL  +T +N +F+     ++    A   +           KT+ I+    + + E+G   K  ++DTPG+GDH+N    +QP++ +I +  ++YL E   + R  + P  D R   CIYFI A  H  +P+DIE+MK+LSK
Sbjct:   60 EFNIMVVGQSGLGKSTLINTLFKSKISRKSVQPTAEERIP----------KTIEIKSITHEIE-EKGVRMKLTVIDTPGFGDHINNENCWQPIMKFINDQYEKYLQEEININRKKQIP--DTRVHCCIYFIPATGHSLRPLDIEFMKRLSK 197          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15919.4346.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDE4_ECTSI7.630e-11492.27Sept1, septin GTPase n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5JBY2_9PHAE9.820e-11391.85Septin-type G domain-containing protein n=1 Tax=Ec... [more]
D7FUI7_ECTSI1.360e-10584.29Sept3, septin GTPase n=1 Tax=Ectocarpus siliculosu... [more]
D8LDE5_ECTSI2.000e-7570.11Sept2, septin GTPase n=1 Tax=Ectocarpus siliculosu... [more]
D7FUI5_ECTSI6.820e-5974.24Sept5, septin GTPase, incomplete sequence n=1 Tax=... [more]
A0A6H5JEJ7_9PHAE5.290e-5470.63Septin-type G domain-containing protein n=1 Tax=Ec... [more]
A0A1Y1ITX3_KLENI8.230e-1736.36Putative septin GTPase n=1 Tax=Klebsormidium niten... [more]
A0A8C9SYP5_SCLFO2.800e-1633.56Septin-9-like n=12 Tax=Scleropages formosus TaxID=... [more]
A0A7S1X588_9CHLO4.630e-1636.36Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]
A0A7K7D621_PHEME2.150e-1532.45SEPT9 protein (Fragment) n=9 Tax=Neognathae TaxID=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15919contigEcto-sp13_S_contig15919:876..3754 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score342.4
Seed ortholog evalue1.3e-91
Seed eggNOG ortholog2880.D8LDE4
Model size543
KEGG koko:K16944
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.ATPase. Has a role at an early stage in the morphogenesis of the spore coat
EggNOG OGsCOG5019@1,KOG1547@2759
Ec32 ortholog descriptionSept4ps, septin GTPase, pseudogene
Ec32 orthologEc-21_003850.1
Cds size543
COG Functional cat.DZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131,ko04147,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462841.3597713-CDS-Ecto-sp13_S_contig15919:875..10081681462841.3597713-CDS-Ecto-sp13_S_contig15919:875..1008Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15919 876..1008 +
1681462841.369921-CDS-Ecto-sp13_S_contig15919:1375..13891681462841.369921-CDS-Ecto-sp13_S_contig15919:1375..1389Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15919 1376..1389 +
1681462841.3783956-CDS-Ecto-sp13_S_contig15919:2764..29471681462841.3783956-CDS-Ecto-sp13_S_contig15919:2764..2947Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15919 2765..2947 +
1681462841.3908758-CDS-Ecto-sp13_S_contig15919:3248..33941681462841.3908758-CDS-Ecto-sp13_S_contig15919:3248..3394Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15919 3249..3394 +
1681462841.4026456-CDS-Ecto-sp13_S_contig15919:3687..37541681462841.4026456-CDS-Ecto-sp13_S_contig15919:3687..3754Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15919 3688..3754 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15919.4346.1prot_Ecto-sp13_S_contig15919.4346.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15919 876..3754 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15919.4346.1

>prot_Ecto-sp13_S_contig15919.4346.1 ID=prot_Ecto-sp13_S_contig15919.4346.1|Name=mRNA_Ecto-sp13_S_contig15919.4346.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=181bp
MPPNTTMATDSGMSSPVVGASVRVPGPPQQRQAPDQLRVMVAGEIGLLTT
TFLNNIFRHLNRGENPMDQAATVVQAAGRGDFGNGKTLSIEEREFDYKTE
RGQDYKFFLVDTPGYGDHVNVSQSFQPVVDYITNGNKRYLAEVRRGNETP
EKDGRTDVCIYFIAAHRCKPIDIEYMKQLSK
back to top

mRNA from alignment at Ecto-sp13_S_contig15919:876..3754+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15919.4346.1 ID=mRNA_Ecto-sp13_S_contig15919.4346.1|Name=mRNA_Ecto-sp13_S_contig15919.4346.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2879bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15919:876..3754+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCTCCTAATACAACCATGGCGACTGACTCCGGCATGAGCTCCCCCGT TGTGGGCGCCAGTGTACGGGTACCAGGACCTCCACAGCAAAGGCAAGCAC CGGACCAGCTACGAGTCATGGTGGCGGGCGAGAGTGGGCTAGGCAAGGCA ATTCCGGAGCCCTGTTGGCATTGGCCCTGCTACCGTCCGAGTGGGTATGA GTTCGCCTTCACACCGCTGTACGCCCACAGTGAGCAGGCCAACTGCCATT CTGAACTGCTTCTTCCTCTATCGACAACTGCATGTCGTATAAGTGTTGCT TCATGGGCAGAAGAAGTTGTGCTGAGCACAAACTTCATGCGTCGGTACTC CCATATGAAAAGTTGCAAGAGAGTAGTCAACTTTTCATATGGGAGTACCG ATGCATGAAGTTTGTGCTCAGCACAACTTCTTCTGCCCATGAAGCAACAC TTATACGACATGCAGTTGTCGATAGAGGAAGAAGCAGTTCAGAATGGCAG TTGGCCTGCTCACTGTGGGCGTACAGCGGTGTGAAGGCGAACTCATACCC ATGTTCTCATCTACTCTTGTTCATCCCGTTCAGATTGCAAAGGTACTCTC TTTACATAGATAGGTGCTGGAACTGGATAGGCTTGATTCGTTCCAGTAGT TTTTTACTCTATCGAGGGCCCCTCTACGGGCGAGCGGGATTCCTCTCCGC GATGCACCATCTTGTTCATTTGCGACGAAAATGTTCCCCCTTTTCGATTG CTTGCTTTGGTTCTTGCGCACGAGCGTCTGCTTTTGTAGAAGGAGAGGGC TCGCTTCAGGGACAATGATTGCAGCGAAAGTTGCAAGTTCTGTTTCGCCG AAAGAGCTGCTTGTCGAATCGTTCAGAGTCTAAGCGGCTTCGAATACACA CCCTTGTGCACGCGTCTTAGACTACTAGGGACTCACCCGAGTCGCGGAGA AGGACATGTGCCCTACTATGTAGTACAACCACATCTCAGTGAAATTATGG CCTGTCTTCTCGGAAACCCCTAAGCACCACCGCATGACGGTCATTCTGTA CACGTATTGCATCGTCCTGCCAACCTAGTTTGTGCCTCGCACTACTCATT CATCCACAAAGACCACATATCCAATGCAATACGTGGGTGCACCCTTATCT CGAAACCAAAGAACACCCTATACTTCTCATCGACCCACCGTCGTTCTCTG CGCTGGGTTGTCAACCGCAATAACCCGCTCAACCCCTTGCTCGCCCCTTG GTGTTTGCCATCGGGGTTGAGTTTTCGTCGCGTGGCAACGAAGTTTTAAA GCAAGCCGCCCCCAACGGTGTTTGCGATCGAGTTTGGGTTTTCGTCGATT GGCAGCGATGTTGTGAAACAAGCCGATAACTTCGTGAGCTCAGCAACCAG GTTACCGCTTTTTTTTTTGCCCCGCTTGCTTTTTTTTGGGGTCACCATGA ATGGGGGTCGAGTAGATCATGTTATGCGGGGTCGAGAACCCTCACTCCGC ACAAAGGGGATAATCGCACCTTGTGTTAAATTGGGTAAGCACCCTCGAGG CGTTACACAGCGCTTACAACTGTCTCTGGAAGTGAAAGCACCAGAAAAAA AATTAAGACAGACGCAGCTGCCATCCGTACCCAAGGAAGTAAGCACAAGA TGCCGAACACCCTTAGCAGGACCCAGCACACCCTTCATGCAACTCGCCGA ATACTTCACGGCGCTTCGCTCTTGGTGATGTGAGAGCCTGGTCCAGTGAG AACCCGGCGTGCTCCGTCCCGGCTTTGTGGGGATGCGAGGTCAATTGTAC AACGACTACGGCATGCCCGACTATGAGTACCCCCCCCCCCCCCGCCCCCC CCTTGATGTTTGTTGTCGACTGATCAACACCACGCCAAGACGACTTTCCT GAACAACATATTTCGGCATCTCAATCGAGGCGAAAATCCGATGGACCAAG CTGCCACCGTGGTACAGGCCGCAGGAAGAGGCGATTTCGGCAACGGCAAG ACGCTCAGTATCGAAGAACGCGAGTTTGACTATAAAACCGAACGAGGACA GGACTACAAGTTCTTCTTGGTGGTGCGGTCTCATGTCTGTGGATTTCTTA GGGATACGGTTCGTGCGTTTGTACTTGCTCGTTACTGGTTCATGTCCTGT GCTTCATGGCACCGGTCGGTACAGGACTGCGCATCCAGGCATTCATTCAG GAGTGTCTCCACCTTCCCTCCCGATCGCAAACGTTTTCGACAACGCCCAC ATCTTCTTGCCGTGCTTGTTGGATCTCCCGACCGATTGGCAATTCGTGTC GACCCATCGTGCCCGCACCTCCGCGAAAATTTCATAACACACCAAAGATG GGTTTCTTGCCGCGTTGTGGCAGGACACCCCTGGGTACGGCGACCATGTG AATGTCAGCCAAAGCTTCCAACCGGTGGTAGACTACATCACGAACGGGAA CAAGAGGTACCTGGCGGAAGTGAGGAGGGGCAACGAGACTCCGGAGAAGG ACGGCAGGACGGACGTCTGGTGAGAGAAGCAAGTACTACGGTCTGTTCCG ACAATATAATAAGGGACACAATTATTTTTGGATTGCTGGCCGCTTCCTAT CCTGTCTGTTTCATGTCATCAACGCTCCTCTTTGTGCGTCAAACAATTGG ACGCTGTACGAGACAATCCTTGTCTGAAACCGACATACCGTCGCGGACAG TGATCGTTTTAGACACCTGTAACGTGGTTCGCTACTGCTAGTCGTGTCAC GGCTGCTTTGGGGTTGGCCACATGTTGACTACTAAACGCTCGTTGTTTTT GTGCGATGGCAGCATATACTTCATTGCTGCTCATCGGTGCAAGCCCATCG ACATCGAGTACATGAAGCAGCTCTCCAAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15919:876..3754+

>mRNA_Ecto-sp13_S_contig15919.4346.1 ID=mRNA_Ecto-sp13_S_contig15919.4346.1|Name=mRNA_Ecto-sp13_S_contig15919.4346.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=543bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15919:876..3754+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCTCCTAATACAACCATGGCGACTGACTCCGGCATGAGCTCCCCCGT
TGTGGGCGCCAGTGTACGGGTACCAGGACCTCCACAGCAAAGGCAAGCAC
CGGACCAGCTACGAGTCATGGTGGCGGGCGAGATTGGCCTGCTCACTACG
ACTTTCCTGAACAACATATTTCGGCATCTCAATCGAGGCGAAAATCCGAT
GGACCAAGCTGCCACCGTGGTACAGGCCGCAGGAAGAGGCGATTTCGGCA
ACGGCAAGACGCTCAGTATCGAAGAACGCGAGTTTGACTATAAAACCGAA
CGAGGACAGGACTACAAGTTCTTCTTGGTGGACACCCCTGGGTACGGCGA
CCATGTGAATGTCAGCCAAAGCTTCCAACCGGTGGTAGACTACATCACGA
ACGGGAACAAGAGGTACCTGGCGGAAGTGAGGAGGGGCAACGAGACTCCG
GAGAAGGACGGCAGGACGGACGTCTGCATATACTTCATTGCTGCTCATCG
GTGCAAGCCCATCGACATCGAGTACATGAAGCAGCTCTCCAAG
back to top