prot_Ecto-sp13_S_contig15910.4342.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig15910.4342.1
Unique Nameprot_Ecto-sp13_S_contig15910.4342.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length284
Homology
BLAST of mRNA_Ecto-sp13_S_contig15910.4342.1 vs. uniprot
Match: D7FLU8_ECTSI (DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLU8_ECTSI)

HSP 1 Score: 511 bits (1317), Expect = 1.160e-175
Identity = 262/278 (94.24%), Postives = 267/278 (96.04%), Query Frame = 0
Query:    1 FNRSVAATASSIFSSNTDCKTLSSVSLTGGTFGRVEGSTVKVTKAIQAFVGGNTCYSHAKIVLNSIGAFCASSDPDITSEHLKMPPLLSQSPSQSQSRIRRVERPSKGWVLATAKKVWGEMHPSPAAASRSTRGPRIPPTFSSCMKAYQLSEPDLSNRQAIYGFRGAKDYLKKVKSFKTLYLTQVFRFPNPIASVANTVLLGLKRERRPLLGSLAFPDGPTKVVFEQERHEWLQQDCESKGRFAYIARTNAGLMTEAIAAIGRGDRAAFMDGRAPNLQ 278
            FNRSVAA ASSIFSSNTDCKT+SSVSLTGGTFGRVEGST KVTKAIQAFVGGNT YSHAK+VLNSI AFCASSDPDITSEHLKMPPLLS SPSQSQSR RRVERPSKGWVLATAKKVWGEMHPSPAAAS STRG RIP TFSSCMKAYQLSEPDLS R AIYGFRGA+DYLKKVKSFKTLYLTQVFRFPNPIASVANTVLLGLKRERRPLLGSLAFPDGPTKVVFE+ERHEWLQQDCESKGRFAYIARTNAGLMTEA+AAIGRGDRAAFMDGRAPNLQ
Sbjct:  196 FNRSVAAAASSIFSSNTDCKTMSSVSLTGGTFGRVEGSTAKVTKAIQAFVGGNTRYSHAKVVLNSIDAFCASSDPDITSEHLKMPPLLSHSPSQSQSRTRRVERPSKGWVLATAKKVWGEMHPSPAAASSSTRGSRIPRTFSSCMKAYQLSEPDLSGRHAIYGFRGARDYLKKVKSFKTLYLTQVFRFPNPIASVANTVLLGLKRERRPLLGSLAFPDGPTKVVFERERHEWLQQDCESKGRFAYIARTNAGLMTEAVAAIGRGDRAAFMDGRAPNLQ 473          
BLAST of mRNA_Ecto-sp13_S_contig15910.4342.1 vs. uniprot
Match: D7G6K8_ECTSI (DNA helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6K8_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 2.220e-13
Identity = 50/116 (43.10%), Postives = 70/116 (60.34%), Query Frame = 0
Query:  157 NRQAIYGFRGAKDYLKKVKSFKTLYLTQVFRFPNPIASVANTVLLGLKRERRPLLGSLAFPDGPTKVVFEQERHEWLQQDCESKGRFAYIARTNAGLMTEAIAAIGRGDRAAFMDG 272
            + QAIYGF GA+D+LK+V+  K  +LTQVFRF   IA VAN+++  LKRE RPLLG  A   G   +        W  Q+   K   A++ART + L+  A+ A  RG++ A++ G
Sbjct:  908 SHQAIYGFIGAEDHLKRVEGGKIQHLTQVFRFDQSIAHVANSLVGPLKRETRPLLGC-AGKQGKVVLSGGTGLEVWQDQERTVKRPIAFLARTVSTLVHAAMWARSRGEKVAWVGG 1022          
BLAST of mRNA_Ecto-sp13_S_contig15910.4342.1 vs. uniprot
Match: UPI001E8E581F (F-box DNA helicase 1 n=2 Tax=Micropterus TaxID=27705 RepID=UPI001E8E581F)

HSP 1 Score: 60.8 bits (146), Expect = 1.010e-6
Identity = 76/300 (25.33%), Postives = 121/300 (40.33%), Query Frame = 0
Query:    1 FNRSVAATASSIFSSNTDCKTLSSVSLTGGTFGRVEGSTVKVTKAIQAFV------GGNTCYSHAKIVLNSIGAFCASSDPDITSEHLKMPPLLSQSPSQSQSRIRRVERPSKGWVLATAKKVWGEMHPSPAAASRSTRGPRIPPTFSSCMKAYQLSEPD--------------------------LSNR----------QAIYGFRGAKDYLKKVKSFKTLYLTQVFRFPNPIASVANTVLLGLKRERRPLLGSLAFPDGPTKVVFEQERHEWLQQDCESKGRFAYIARTNAGLMTEAI 258
            FN+SVA  A   F  N DCKT+ S++   G  G+      K+T  ++ F        G   ++ AK+V+ ++ AF AS+DP I + H+    ++ +     +  I  +E+P   + +  A+ +W +M         +        T    +K +QL  P                           LS R          Q IY F+GA + L  V      YLTQ FRF   IA V  T+L   K+  + L+G      G      E+           S+G+ A ++R N  + +EA+
Sbjct:  502 FNKSVADEAQRRFPRNVDCKTVHSLAY--GEVGKSYRLHQKLTFNLKPFTVNSALPEGRGGFAKAKVVVTTLNAFMASTDPTINTSHVPSTRIIKK---HHRVEIPEIEKP---FFVHDAQTIWNKMRDVNEKEKDAYHM-----THDGYLKLWQLRVPKPKLSDQYDVLFIDEAQDCTPAIMDVLLSQRCGKILVGDPHQQIYTFKGAVNALNFVDHTHIYYLTQSFRFGAEIAYVGATILKVCKKVEKILVGGKQ-KGGVCDETAEKVEAALRTGVSTSQGKTAILSRCNVSVFSEAV 787          
BLAST of mRNA_Ecto-sp13_S_contig15910.4342.1 vs. uniprot
Match: A0A258L0B7_9HYPH (DNA helicase n=1 Tax=Hyphomicrobium sp. 32-62-53 TaxID=1970390 RepID=A0A258L0B7_9HYPH)

HSP 1 Score: 58.5 bits (140), Expect = 4.640e-6
Identity = 69/249 (27.71%), Postives = 102/249 (40.96%), Query Frame = 0
Query:   54 TCYSHAKIVLNSIGAFCASSDPDITSEHL-------KMPPLLSQSPSQSQSRIRRVERPSKGWVLATAKKVWGEM-HPS-PAAASR-------STRGPRIPPTFSSCMKAYQLSEPDLSNRQA--------------IYGFRGAKDYLKKVKSFKTLYLTQVFRFPNPIASVANTVLLGLKRERRPLLGSLAFPDGPTKVVFEQERHEWLQQDCESKGRFAYIARTNAGLMTEAIAAIGRGDRAAFMDG 272
            T   HA ++  ++  FC S+D ++   H+       K+PP L  S  Q              +    A  +W  M HP  P A          +   PR+P  +    +A   +   L   +A              IY FR A + +K +K     YLTQ FRF + +AS A+ VL  L  ER+ L G+ A     T+++ E+E       DC        +ARTNA +M E IAA+  G     + G
Sbjct:  116 TPIQHAHLLARTVARFCQSADDEVCPGHVPHYQRIEKLPPALLASTRQ--------------YAAERAADLWNRMTHPEDPIALGHDGYLKLWALGKPRLPFDYVLLDEAQDTNPVILETLRAQDCRLVVVGDPWQMIYEFRNALNAMKALKGGANTYLTQSFRFGDALASEASKVLSTLG-ERKTLRGNPALT---TEILPEEEG----APDC-------VLARTNASVMAETIAALAAGKSPYILGG 335          
BLAST of mRNA_Ecto-sp13_S_contig15910.4342.1 vs. uniprot
Match: A0A7K0JN13_9ACTN (DNA helicase n=1 Tax=Acidiferrimicrobium australe TaxID=2664430 RepID=A0A7K0JN13_9ACTN)

HSP 1 Score: 57.8 bits (138), Expect = 8.880e-6
Identity = 69/268 (25.75%), Postives = 105/268 (39.18%), Query Frame = 0
Query:   42 VTKAIQAFVGGNTCYSHAKIV---LNSIGAFCASSDPDITSEHLKMPPLLSQSPSQSQSRIRRVERPSKGWVLATAKKVWGEMHPSPAAASRSTRGPRIPPTFSSCMKAYQLSEPDL--------------------------------SNRQAIYGFRGAKDYLKKVKSFKTLYLTQVFRFPNPIASVANTVLLGLKRERRPLLGS--LAFPDGPTKVVFEQERHEWLQQDCESKGRFAYIARTNAGLMTEAIAAIGRGDRAAFMDG 272
            + KA    +GG+   + A +    L ++  FC S+D  IT+ H   P     +     S            V+  A++ W ++         ST G R+ P+    +K +QLS+P L                                 + QAIYG+RGA D+L++  +   + LTQ +RF   +A  AN V LG+   R  L GS       GP +V                    A + RTNAG + E +AA  +G   A + G
Sbjct:  108 ILKAPSVPLGGDVVVTPAAVASMALRTVAGFCRSADEAITARHFPRPEAPEGTDLAGLSAT----------VVGAARRAWADL--------TSTSG-RLKPSHDVYLKLWQLSQPRLRYDFVLFDEAQDADPAVADVIVHQDAQLVAVGDSAQAIYGWRGATDFLERAPADHRVELTQSWRFGPAVAEEAN-VWLGVLDARLRLRGSPHRVSTLGPVEVPD------------------AVLCRTNAGCVAEVMAAHDQGRPVALVGG 337          
BLAST of mRNA_Ecto-sp13_S_contig15910.4342.1 vs. uniprot
Match: A0A2T0KJ06_9ACTN (DNA helicase n=1 Tax=Actinoplanes italicus TaxID=113567 RepID=A0A2T0KJ06_9ACTN)

HSP 1 Score: 57.0 bits (136), Expect = 1.590e-5
Identity = 83/319 (26.02%), Postives = 130/319 (40.75%), Query Frame = 0
Query:    1 FNRSVAATASSIFSSNTDCKTLSSVSL--TGGTFG-RVEGSTVKVTKAIQAFVGGNTCY-----------SHAKIVLNSIGAFCASSDPDITSEHLKMPPLLSQSPSQSQSRIRRVERPSKGWVLATAKKVWGEMHPSPAAASRSTRGPRIPPTFSSCMKAYQLSEP-------------DLS--------------------NRQAIYGFRGAKDYLKKVKSFKTLYLTQVFRFPNPIASVANTVLLGLKRERRPLLGSLAFPDGPTKVVFEQERHEWLQQDCESKGRFAYIARTNAGLMTEAIAAIGRGDRAAFMDG 272
            +NR++A  A   F ++ DC+T  S++    G  F  R+ G  V    A +     N                A++V+  +G F  S+D +   +HL   P+   S + +    +        +++  A+K W ++        +  RG R+  T  + +K YQLS P             DLS                    + QAIYGFRGA D ++K  + + L L+Q FRF   IA  AN  L  L   R PL      P G T  + ++                A + R+NAG + + +AA+  G RAA + G
Sbjct:   55 YNRALATEAKRDFPASVDCRTAHSLAFGPVGRHFSARLSGPRVPAKTAAEVLGFNNPVQIADALAPLSPVKLARLVMAMVGMFLNSADNEPGVQHLV--PVDGYSDTDNAELAK--------YLVPFARKAWDDL--------QLVRGGRLQFTHDTYLKIYQLSRPRIPVDFVLLDEAQDLSPVMASLFHFQDHAQRIMVGDSAQAIYGFRGAIDAMRKFVADQRLTLSQSFRFGPAIAGEANRWLDLL---RAPLRLRGFEPAGSTIGMLDRPD--------------AVLCRSNAGAIGQLVAAVSAGRRAALVGG 338          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15910.4342.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FLU8_ECTSI1.160e-17594.24DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
D7G6K8_ECTSI2.220e-1343.10DNA helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D... [more]
UPI001E8E581F1.010e-625.33F-box DNA helicase 1 n=2 Tax=Micropterus TaxID=277... [more]
A0A258L0B7_9HYPH4.640e-627.71DNA helicase n=1 Tax=Hyphomicrobium sp. 32-62-53 T... [more]
A0A7K0JN13_9ACTN8.880e-625.75DNA helicase n=1 Tax=Acidiferrimicrobium australe ... [more]
A0A2T0KJ06_9ACTN1.590e-526.02DNA helicase n=1 Tax=Actinoplanes italicus TaxID=1... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000212DNA helicase, UvrD/REP typePANTHERPTHR11070UVRD / RECB / PCRA DNA HELICASE FAMILY MEMBERcoord: 1..83
coord: 159..264
NoneNo IPR availablePANTHERPTHR11070:SF30F-BOX DNA HELICASE 1coord: 1..83
coord: 159..264

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15910contigEcto-sp13_S_contig15910:106..3252 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15910.4342.1mRNA_Ecto-sp13_S_contig15910.4342.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig15910 106..3252 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig15910.4342.1 ID=prot_Ecto-sp13_S_contig15910.4342.1|Name=mRNA_Ecto-sp13_S_contig15910.4342.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=284bp
FNRSVAATASSIFSSNTDCKTLSSVSLTGGTFGRVEGSTVKVTKAIQAFV
GGNTCYSHAKIVLNSIGAFCASSDPDITSEHLKMPPLLSQSPSQSQSRIR
RVERPSKGWVLATAKKVWGEMHPSPAAASRSTRGPRIPPTFSSCMKAYQL
SEPDLSNRQAIYGFRGAKDYLKKVKSFKTLYLTQVFRFPNPIASVANTVL
LGLKRERRPLLGSLAFPDGPTKVVFEQERHEWLQQDCESKGRFAYIARTN
AGLMTEAIAAIGRGDRAAFMDGRAPNLQVGTSV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000212DNA_helicase_UvrD/REP