mRNA_Ecto-sp13_S_contig1591.4340.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1591.4340.1
Unique NamemRNA_Ecto-sp13_S_contig1591.4340.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1591.4340.1 vs. uniprot
Match: D7FSJ3_ECTSI (Ion_trans domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSJ3_ECTSI)

HSP 1 Score: 237 bits (605), Expect = 1.970e-72
Identity = 129/153 (84.31%), Postives = 135/153 (88.24%), Query Frame = 2 
Query:    2 TGQGGLEGYQKQGALARGTAGSIVLPPDADESKWLMQRFLKDLQRNNDRNGQDDSTSRSREGSSSVAGAVQDYSDEAKATFTRGMALHLLGSRRGSGSSEAETEIGSPAARDPQTKPVGFDAVDHSCLEDGTRDVGRGTGGLGEGKNLGHLDG 460
            TGQGGLEGYQKQGALARG AGSIVLPPDA ESKWLMQRFL DLQRNNDRNGQ+D T R+R GSSSVAGAVQD SDEA+AT  RGMALHLLGSRRGSGSSEA+TEIGSPAARDPQTKP GFDA  H CLEDG R VGRGTGGL E +N G+LDG
Sbjct:  325 TGQGGLEGYQKQGALARGRAGSIVLPPDAHESKWLMQRFLTDLQRNNDRNGQEDFTPRNRRGSSSVAGAVQDNSDEARATAARGMALHLLGSRRGSGSSEAKTEIGSPAARDPQTKPGGFDADGH-CLEDGIRIVGRGTGGLEEEENPGNLDG 476
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BLAST of mRNA_Ecto-sp13_S_contig1591.4340.1 vs. uniprot
Match: A0A6H5K0T1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0T1_9PHAE)

HSP 1 Score: 229 bits (583), Expect = 2.400e-65
Identity = 122/144 (84.72%), Postives = 127/144 (88.19%), Query Frame = 2 
Query:    2 TGQGGLEGYQKQGALARGTAGSIVLPPDADESKWLMQRFLKDLQRNNDRNGQDDSTSRSREGSSSVAGAVQDYSDEAKATFTRGMALHLLGSRRGSGSSEAETEIGSPAARDPQTKPVGFDAVDHSCLEDGTRDVGRGTGGLGE 433
            TGQGGLEGYQKQGALARG  GSIVLPPDADESKWLMQRFLKDLQRNNDRNGQ+D T R+R GSSSVAGAVQD  DEA+AT  RGMALHLLG RRGSGSSEA+TEI SP ARDPQTKP GFDAV H CLEDGTR+V R TGGLGE
Sbjct: 1725 TGQGGLEGYQKQGALARGRDGSIVLPPDADESKWLMQRFLKDLQRNNDRNGQEDFTLRNRGGSSSVAGAVQDDGDEARATVARGMALHLLGPRRGSGSSEAKTEIQSPVARDPQTKPGGFDAVGHYCLEDGTRNVERRTGGLGE 1868
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1591.4340.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FSJ3_ECTSI1.970e-7284.31Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K0T1_9PHAE2.400e-6584.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1591contigEcto-sp13_S_contig1591:4931..5623 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score174.5
Seed ortholog evalue3.1e-41
Seed eggNOG ortholog2880.D7FSJ3
Preferred nameCATSPER3
Model size693
KEGG koko:K04851,ko:K04855,ko:K16891,ko:K16892,ko:K21862
KEGG TC1.A.1.10.13,1.A.1.11.1,1.A.1.11.20,1.A.1.11.21,1.A.1.11.5,1.A.1.19.1,1.A.1.19.3
KEGG Pathwayko04010,ko04020,ko04022,ko04024,ko04218,ko04260,ko04261,ko04270,ko04530,ko04713,ko04723,ko04724,ko04725,ko04726,ko04727,ko04728,ko04911,ko04912,ko04921,ko04924,ko04925,ko04927,ko04930,ko04934,ko04973,ko05010,ko05031,ko05410,ko05412,ko05414,map04010,map04020,map04022,map04024,map04218,map04260,map04261,map04270,map04530,map04713,map04723,map04724,map04725,map04726,map04727,map04728,map04911,map04912,map04921,map04924,map04925,map04927,map04930,map04934,map04973,map05010,map05031,map05410,map05412,map05414
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0001508,GO:0003674,GO:0005215,GO:0005216,GO:0005261,GO:0005575,GO:0005623,GO:0005886,GO:0005891,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0007338,GO:0008037,GO:0008150,GO:0008324,GO:0009566,GO:0009987,GO:0009988,GO:0015075,GO:0015267,GO:0015318,GO:0016020,GO:0016021,GO:0019953,GO:0022414,GO:0022803,GO:0022838,GO:0022857,GO:0022890,GO:0030001,GO:0031224,GO:0032991,GO:0034220,GO:0034702,GO:0034703,GO:0034704,GO:0035036,GO:0036128,GO:0042391,GO:0044425,GO:0044459,GO:0044464,GO:0044703,GO:0051179,GO:0051234,GO:0051704,GO:0051899,GO:0055085,GO:0065007,GO:0065008,GO:0070838,GO:0071944,GO:0072511,GO:0086010,GO:0098655,GO:0098796,GO:0098797,GO:1902495,GO:1990351
Exons1
EggNOG free text desc.membrane depolarization during action potential
EggNOG OGsKOG2301@1,KOG2301@2759
Cds size372
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000,ko04040
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462840.8845644-UTR-Ecto-sp13_S_contig1591:4930..50361681462840.8845644-UTR-Ecto-sp13_S_contig1591:4930..5036Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1591 4931..5036 +
1681462840.9111452-UTR-Ecto-sp13_S_contig1591:5408..56231681462840.9111452-UTR-Ecto-sp13_S_contig1591:5408..5623Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1591 5409..5623 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462840.9005244-CDS-Ecto-sp13_S_contig1591:5036..54081681462840.9005244-CDS-Ecto-sp13_S_contig1591:5036..5408Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1591 5037..5408 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1591.4340.1prot_Ecto-sp13_S_contig1591.4340.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1591 5037..5408 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1591.4340.1

>prot_Ecto-sp13_S_contig1591.4340.1 ID=prot_Ecto-sp13_S_contig1591.4340.1|Name=mRNA_Ecto-sp13_S_contig1591.4340.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=124bp
MQRFLKDLQRNNDRNGQDDSTSRSREGSSSVAGAVQDYSDEAKATFTRGM
ALHLLGSRRGSGSSEAETEIGSPAARDPQTKPVGFDAVDHSCLEDGTRDV
GRGTGGLGEGKNLGHLDGFRRLR*
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mRNA from alignment at Ecto-sp13_S_contig1591:4931..5623+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1591.4340.1 ID=mRNA_Ecto-sp13_S_contig1591.4340.1|Name=mRNA_Ecto-sp13_S_contig1591.4340.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=693bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1591:4931..5623+ (Ectocarpus species13 EcNAP12_S_4_19m)
CACGGGACAGGGAGGTCTCGAAGGGTACCAGAAGCAGGGGGCGTTGGCAA
GGGGGACAGCCGGATCGATCGTCCTCCCGCCGGATGCAGACGAAAGCAAG
TGGCTCATGCAACGATTCTTGAAGGACTTGCAGCGGAACAACGACAGAAA
CGGGCAGGACGATTCAACGTCGAGGAGTCGTGAAGGTTCTTCGTCTGTTG
CCGGTGCGGTTCAAGACTACAGTGATGAAGCAAAAGCGACTTTTACTAGA
GGGATGGCTTTGCACCTGCTTGGCTCGCGCCGTGGAAGCGGGTCTTCTGA
GGCCGAAACGGAGATTGGATCTCCCGCCGCAAGAGACCCGCAAACAAAAC
CGGTCGGTTTCGATGCTGTTGACCACTCCTGTCTGGAAGACGGAACTCGC
GATGTGGGACGGGGGACCGGCGGGTTGGGAGAGGGAAAGAATCTGGGACA
TTTGGATGGGTTCCGGAGACTTCGCTGACGTCGTGGCTGCGAGACCGTAG
GAGCGTAGACCTATGACGTGGCGGTTGTGATATGTCTTGTTTGTAGCTCT
CACGCTATGTGTATTATGATAGTCCCGAATCCGTCATCATGCAGTGTACG
TACCATAGAATTGATGCAATGAGGTTCGGCAACTGAGGAACTACCTGTAG
TTCGGAATGCTTGAGTTATGTTGAAGGATGTTCTTCATGGGTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1591:4931..5623+

>mRNA_Ecto-sp13_S_contig1591.4340.1 ID=mRNA_Ecto-sp13_S_contig1591.4340.1|Name=mRNA_Ecto-sp13_S_contig1591.4340.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=372bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1591:4931..5623+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAACGATTCTTGAAGGACTTGCAGCGGAACAACGACAGAAACGGGCA
GGACGATTCAACGTCGAGGAGTCGTGAAGGTTCTTCGTCTGTTGCCGGTG
CGGTTCAAGACTACAGTGATGAAGCAAAAGCGACTTTTACTAGAGGGATG
GCTTTGCACCTGCTTGGCTCGCGCCGTGGAAGCGGGTCTTCTGAGGCCGA
AACGGAGATTGGATCTCCCGCCGCAAGAGACCCGCAAACAAAACCGGTCG
GTTTCGATGCTGTTGACCACTCCTGTCTGGAAGACGGAACTCGCGATGTG
GGACGGGGGACCGGCGGGTTGGGAGAGGGAAAGAATCTGGGACATTTGGA
TGGGTTCCGGAGACTTCGCTGA
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