mRNA_Ecto-sp13_S_contig15906.4335.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15906.4335.1
Unique NamemRNA_Ecto-sp13_S_contig15906.4335.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig15906.4335.1 vs. uniprot
Match: D7G0Y1_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Y1_ECTSI)

HSP 1 Score: 369 bits (947), Expect = 8.200e-114
Identity = 182/186 (97.85%), Postives = 183/186 (98.39%), Query Frame = 1
Query:    1 QVCFSSDGKLLAVACEDKGHTVMVFRWESGLLRCQARLGVKKALSMCFSLNSDELLAAGHKHFKVWTLSGGGLMQGKRGLFGSGSKVQALTCAAAMSNGEGGGSSFILGGSSGSLLKLDGGRKVSSEIEGHEGPVYALYAYPAPDGSGTCLVTGGGDGKIKTWDAELGMVNEFDLVGRPYLSGGTP 558
            QVCFSSDGKLLAVACEDKGHTVMVFRWESGLLRCQARLGVKKALSMCFS NSDELLA GHKHFKVWTLSGGGLMQGKRGLFGSGSKVQALTCA A+SNGEGGGSSFILGGSSGSLLKLDGGRKVSSEIEGHEGPVYALYAYPAPDGSGTCLVTGGGDGKIKTWDAELGMVNEFDLVGRPYLSGGTP
Sbjct: 1331 QVCFSSDGKLLAVACEDKGHTVMVFRWESGLLRCQARLGVKKALSMCFSFNSDELLAVGHKHFKVWTLSGGGLMQGKRGLFGSGSKVQALTCAVAISNGEGGGSSFILGGSSGSLLKLDGGRKVSSEIEGHEGPVYALYAYPAPDGSGTCLVTGGGDGKIKTWDAELGMVNEFDLVGRPYLSGGTP 1516          
BLAST of mRNA_Ecto-sp13_S_contig15906.4335.1 vs. uniprot
Match: A0A6H5KFK9_9PHAE (HELP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFK9_9PHAE)

HSP 1 Score: 332 bits (852), Expect = 2.180e-105
Identity = 169/188 (89.89%), Postives = 172/188 (91.49%), Query Frame = 1
Query:    1 QVCFSSDGKLLAVACEDKGHTVMVFRWESGLLRCQARLGVKKALSMCFSLNSDELLAAGHKHFKVWTLSGGGLMQGKRGLFGSGSKVQALTCAAAMSNGEGGGSSFILGGSSGSLLKLDGGRKVSSEIEGHEGPVYALYAYPAPDGSGTCLVTGGGDGKIKTWDAEL--------GMVNEFDLVGRPY 540
            QVCFSSDGKLLAVACEDKGHTVMVFRWESGLLRCQARLGVKKALSMCFSLNSDELLAAGHKHFKVWTLSGGGLMQGKRGLFGSGSKVQALTCAAA+SNGEGGGSSFILGGSSGSLLKLDGGRKVSSEIEGHEGPVYALYAYPAPDGSGTCLVTGGGDGKIKTWDAE+        G +    LV   Y
Sbjct:  445 QVCFSSDGKLLAVACEDKGHTVMVFRWESGLLRCQARLGVKKALSMCFSLNSDELLAAGHKHFKVWTLSGGGLMQGKRGLFGSGSKVQALTCAAAISNGEGGGSSFILGGSSGSLLKLDGGRKVSSEIEGHEGPVYALYAYPAPDGSGTCLVTGGGDGKIKTWDAEVISRRWGLSGAIENISLVTTDY 632          
BLAST of mRNA_Ecto-sp13_S_contig15906.4335.1 vs. uniprot
Match: A0A7S1TVZ1_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TVZ1_9STRA)

HSP 1 Score: 104 bits (260), Expect = 8.380e-22
Identity = 65/176 (36.93%), Postives = 99/176 (56.25%), Query Frame = 1
Query:    4 VCFSSDGKLLAVACEDKGHTVMVFRWESGLLRCQARLGVKKALSMCFSLNSDELLAAGHKHFKVWTLSGGGLMQGKRGLFGSGSKVQALTCAAAMSNGEGGGSSFILGGSSGSLLKLD-GGRKVSSEIEGH--EGPVYALYAYPAPDGSGTCLVTGGGDGKIKTWDAELGMVNEFD 522
            + FS+DG  LAV+  D  H++ +F W   +L      G KK L++ +S +  ++L  G KHF++W L+G  L+  KRGLFGS +K Q + CA  + N      +F++G  +G + K++ GGRKV    EG   +G   AL  Y   + +   L++GG DG +K W A+L    EFD
Sbjct:  315 MAFSADGAYLAVSTCDDLHSLQIFNWAEEVLVASKPSGDKKVLTLAWSTDGTQILQGGEKHFRIWKLNGR-LLTSKRGLFGSSAKKQNVHCAVFLEN------AFVMGVENGDIYKVEEGGRKVGQVAEGAHPKGACGALGIYKNVEANALMLISGGFDGVVKYWSADL----EFD 479          
BLAST of mRNA_Ecto-sp13_S_contig15906.4335.1 vs. uniprot
Match: K3WHU2_GLOUD (EF-hand domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WHU2_GLOUD)

HSP 1 Score: 73.9 bits (180), Expect = 2.840e-11
Identity = 31/68 (45.59%), Postives = 46/68 (67.65%), Query Frame = 3
Query:  561 KILVGTSCSEIFEISTSEGTDVNGGDCLMRGHFRDQLWGLASHPAKPLYVSSGDEGMLKEWNASTLAL 764
            K+L+GT  S+I E+  S GT +NGG  L  GH+  +LWGLA HP++  +V++GD+G L+ W+  T  L
Sbjct: 2001 KLLIGTRSSDIIEMDVSSGTLLNGGKPLFSGHYNSELWGLAVHPSRREFVTTGDDGTLRVWDMETKQL 2068          
BLAST of mRNA_Ecto-sp13_S_contig15906.4335.1 vs. uniprot
Match: A0A5D6XKB7_9STRA (EF-hand domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XKB7_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 3.840e-11
Identity = 31/74 (41.89%), Postives = 46/74 (62.16%), Query Frame = 3
Query:  534 AVSIGRDPLKILVGTSCSEIFEISTSEGTDVNGGDCLMRGHFRDQLWGLASHPAKPLYVSSGDEGMLKEWNAST 755
            +V +     K+LVGT  S+I E+  S G  +NGG  L  GHF  +LWGLA HP++  + ++GD+G L+ W+  T
Sbjct: 2056 SVDLSASAQKLLVGTKSSDIVEVDVSSGVVLNGGRPLFSGHFTHELWGLAVHPSRREFTTTGDDGTLRVWDMDT 2129          
BLAST of mRNA_Ecto-sp13_S_contig15906.4335.1 vs. uniprot
Match: A0A6J0XBB0_ODOVR (echinoderm microtubule-associated protein-like 5 isoform X7 n=5 Tax=Cervidae TaxID=9850 RepID=A0A6J0XBB0_ODOVR)

HSP 1 Score: 71.2 bits (173), Expect = 2.280e-10
Identity = 55/185 (29.73%), Postives = 87/185 (47.03%), Query Frame = 1
Query:    4 VCFSSDGKLLAVACEDKGHTVMVFRWESGLLRCQARLGVKKALSMCFS-LNSDELLAAGHKHFKVWTLSGGGLMQGKRGLFGSGSKVQALTCAAAMSNGEGGGSSFILGGSSGSLLKLDGGRKVSSEIEGHEGPVYALYAYPAPDGSGTCLVTGGGDGKIKTWDAELGMVNEFDLVGRPYLSGGT 555
            V FS+DG+ LA A  D GHTV+++ W+ G   C  R    K   +  +    D+L+ AG KH K W  +GGGL+ G++G  G+  K   + CA       G        G+S   + +     +   ++ H+GPV++++A           VTGG DG +  WD       +   + R  L+ G+
Sbjct:  778 VDFSADGRRLASAGLDDGHTVVLWDWKRGERLCVTRGSKDKIFVVKMNPYVPDKLMTAGIKHIKFWRRAGGGLI-GRKGYIGTLGKNDTMMCAV-----YGWTEEMAFSGTSTGDVCIWRDIFLVKTVKAHDGPVFSMHALEKG------FVTGGKDGVVTLWDDSFERCLKTYAIKRAALAPGS 950          
BLAST of mRNA_Ecto-sp13_S_contig15906.4335.1 vs. uniprot
Match: A0A485KS51_9STRA (Aste57867_11158 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KS51_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 3.170e-10
Identity = 51/176 (28.98%), Postives = 86/176 (48.86%), Query Frame = 1
Query:   10 FSSDGKLLAVACEDKGHTVMVFRWESGLLRCQARLGVKKAL-SMCFSLNSDELLAAGHKHFKVWTLSGGGLMQGKRGLFGSGSKVQALTCAAAMSNGEGGGSS--FILGGSSGSLLKLDGGRKVSSEIEGHEGPVYALYAYPAPDGSGTCLVTGGGDGKIKTWDAELGMVNEFDLV 528
            FS+DG +LA    D  H++ +++W+ G+L   ++ GV+ AL  +     S+E ++ G K    WT  G  L   K+ + G     Q    A  +        S    +G   GS+  ++  + +S  I+ H GPV+AL++      S    ++GG DGK+  WDA L  ++ FD+ 
Sbjct: 1072 FSTDGAILASMGNDDDHSIAIYKWKEGVLVASSK-GVRNALMGLIHFPTSNEWISLGDKVITFWTEQGRNL-NAKKAILGKDVTPQMFYAATVLPTATTAKPSAKLAVGTHDGSIYVIEN-KTLSKVIKAHTGPVFALFS----SNSKAEWISGGKDGKVTIWDANLSALHSFDVA 1240          
BLAST of mRNA_Ecto-sp13_S_contig15906.4335.1 vs. uniprot
Match: A0A812T9P4_9DINO (EML6 protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812T9P4_9DINO)

HSP 1 Score: 67.4 bits (163), Expect = 3.950e-9
Identity = 28/68 (41.18%), Postives = 49/68 (72.06%), Query Frame = 3
Query:  561 KILVGTSCSEIFEISTSEGTDVNGGDCLMRGHFRDQLWGLASHPAKPLYVSSGDEGMLKEWNASTLAL 764
            K+LVGT+ +E++E++  EGT+++ G CL++GH +D++WG+A HP K    + GD+  L+ W+  T +L
Sbjct:  698 KLLVGTAGAEVYELNAMEGTNLHDG-CLLQGHCKDEVWGIAVHPQKGEVATVGDDRTLRIWSLKTHSL 764          
BLAST of mRNA_Ecto-sp13_S_contig15906.4335.1 vs. uniprot
Match: UPI00140338E2 (echinoderm microtubule-associated protein-like 6 isoform X1 n=6 Tax=Petromyzon marinus TaxID=7757 RepID=UPI00140338E2)

HSP 1 Score: 66.2 bits (160), Expect = 1.120e-8
Identity = 61/184 (33.15%), Postives = 89/184 (48.37%), Query Frame = 1
Query:    4 VCFSSDGKLLAVACEDKGHTVMVFRWESGLLRCQARLG-VKKALSMCFSLNSD-ELLAAGHKHFKVWTLSGGGLMQGKRGLFG--SGSKVQALTCAAAMSNGEGGGSSFILGGSSGSLLKLDGGRKVSSEIEGHEGPVYALYAYPAPDGSGTCLVTGGGD------GKIKTWDAELGMVNEFDL 525
            V FS+ G+LL     D  HT+ V+RW+ G  R  +R G  ++  +  F  +SD +L+ AG K  K WTL+GG L+  K+G+ G   G++VQ +   A  +N     S    G  SG +        V      H GPV+++Y     DG    +VTGG +      G +K WD E+     F L
Sbjct: 1551 VGFSATGRLLVSVGADPEHTLTVWRWQEGA-RVSSRAGHSERVFAAEFRPDSDSQLVTAGVKSVKFWTLAGGVLLA-KKGVLGPVEGARVQTMLSLAFGAN-----SLTFTGSLSGDVYVWREHVLVRLVARAHTGPVFSMYT-TLKDG---LIVTGGKERPSKEGGAVKLWDQEMKRCRAFQL 1723          
BLAST of mRNA_Ecto-sp13_S_contig15906.4335.1 vs. uniprot
Match: A0A212CTF1_CEREH (EML5 (Fragment) n=2 Tax=Artiodactyla TaxID=91561 RepID=A0A212CTF1_CEREH)

HSP 1 Score: 64.3 bits (155), Expect = 4.040e-8
Identity = 56/187 (29.95%), Postives = 89/187 (47.59%), Query Frame = 1
Query:    4 VCFSSDGKLLAVACEDKGHTVMVFRWESGLLRCQARLGVKKALSMCFSLNS---DELLAAGHKHFKVWTLSGGGLMQGKRGLFGSGSKVQALTCAAAMSNGEGGGSSFILGGSSGSLLKLDGGRKVSSEIEGHEGPVYALYAYPAPDGSGTCLVTGGGDGKIKTWDAELGMVNEFDLVGRPYLSGGT 555
            V FS+DG+ LA A  D GHTV+++ W+ G  R     G K  + +   +N    D+L+ AG KH K W  +GGGL+ G++G  G+  K   +     MS   G        G+S   + +     +   ++ H+GPV++++A           VTGG DG +  WD       +   + R  L+ G+
Sbjct:  391 VDFSADGRRLASAGLDDGHTVVLWDWKRGE-RLSITRGSKDKIFVV-KMNPYVPDKLMTAGIKHIKFWRRAGGGLI-GRKGYIGTLGKNDTM-----MSAVYGWTEEMAFSGTSTGDVCIWRDIFLVKTVKAHDGPVFSMHALEKG------FVTGGKDGVVALWDDSFERCLKTYAIKRAALAPGS 563          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15906.4335.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0Y1_ECTSI8.200e-11497.85N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepI... [more]
A0A6H5KFK9_9PHAE2.180e-10589.89HELP domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A7S1TVZ1_9STRA8.380e-2236.93Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
K3WHU2_GLOUD2.840e-1145.59EF-hand domain-containing protein n=1 Tax=Globispo... [more]
A0A5D6XKB7_9STRA3.840e-1141.89EF-hand domain-containing protein n=1 Tax=Pythium ... [more]
A0A6J0XBB0_ODOVR2.280e-1029.73echinoderm microtubule-associated protein-like 5 i... [more]
A0A485KS51_9STRA3.170e-1028.98Aste57867_11158 protein n=1 Tax=Aphanomyces stella... [more]
A0A812T9P4_9DINO3.950e-941.18EML6 protein (Fragment) n=1 Tax=Symbiodinium sp. K... [more]
UPI00140338E21.120e-833.15echinoderm microtubule-associated protein-like 6 i... [more]
A0A212CTF1_CEREH4.040e-829.95EML5 (Fragment) n=2 Tax=Artiodactyla TaxID=91561 R... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15906contigEcto-sp13_S_contig15906:41..3028 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score327.8
Seed ortholog evalue2.9e-87
Seed eggNOG ortholog2880.D7G0Y1
Model size766
KEGG koko:K18595,ko:K18598
Hectar predicted targeting categoryother localisation
Exons8
EggNOG free text desc.microtubule binding
EggNOG OGsCOG2319@1,KOG2106@2759
Cds size495
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15906.4335.1prot_Ecto-sp13_S_contig15906.4335.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15906 910..2962 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462840.3980055-UTR-Ecto-sp13_S_contig15906:40..1081681462840.3980055-UTR-Ecto-sp13_S_contig15906:40..108Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15906 41..108 -
1681462840.4136775-UTR-Ecto-sp13_S_contig15906:363..4711681462840.4136775-UTR-Ecto-sp13_S_contig15906:363..471Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15906 364..471 -
1681462840.4267688-UTR-Ecto-sp13_S_contig15906:880..9091681462840.4267688-UTR-Ecto-sp13_S_contig15906:880..909Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15906 881..909 -
1681462840.4942207-UTR-Ecto-sp13_S_contig15906:2962..30281681462840.4942207-UTR-Ecto-sp13_S_contig15906:2962..3028Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15906 2963..3028 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462840.439063-CDS-Ecto-sp13_S_contig15906:909..9111681462840.439063-CDS-Ecto-sp13_S_contig15906:909..911Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15906 910..911 -
1681462840.447931-CDS-Ecto-sp13_S_contig15906:951..10121681462840.447931-CDS-Ecto-sp13_S_contig15906:951..1012Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15906 952..1012 -
1681462840.455995-CDS-Ecto-sp13_S_contig15906:1615..17631681462840.455995-CDS-Ecto-sp13_S_contig15906:1615..1763Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15906 1616..1763 -
1681462840.4645078-CDS-Ecto-sp13_S_contig15906:2142..22341681462840.4645078-CDS-Ecto-sp13_S_contig15906:2142..2234Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15906 2143..2234 -
1681462840.4739063-CDS-Ecto-sp13_S_contig15906:2563..27231681462840.4739063-CDS-Ecto-sp13_S_contig15906:2563..2723Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15906 2564..2723 -
1681462840.483926-CDS-Ecto-sp13_S_contig15906:2930..29621681462840.483926-CDS-Ecto-sp13_S_contig15906:2930..2962Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15906 2931..2962 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15906.4335.1

>prot_Ecto-sp13_S_contig15906.4335.1 ID=prot_Ecto-sp13_S_contig15906.4335.1|Name=mRNA_Ecto-sp13_S_contig15906.4335.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=165bp
MVFRWESGLLRCQARLGVKKALSMCFSLNSDELLAAGHKHFKVWTLSGGG
LMQGKRGLFGSGSKVQALTCAAAMSNGEGGGSSFILGGSSGSLLKLDGGR
KVSSEIEGHEGPVYALYAYPAPDGSGTCLVTGGGDGKIKTWDAELGMVNE
FDLVGRPYLSGGTP*
back to top

mRNA from alignment at Ecto-sp13_S_contig15906:41..3028-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15906.4335.1 ID=mRNA_Ecto-sp13_S_contig15906.4335.1|Name=mRNA_Ecto-sp13_S_contig15906.4335.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2988bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15906:41..3028- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTGTGCTTCAGCTCCGATGGGAAGCTGCTGGCTGTAGCGTGCGAGGA CAAGGGCCACACAGTCATGGTGTTCCGCTGGGAGTCTGGCCTTCTACGGT AACTTTGAGGATAACCAGAGGAACACGTCGAATACACTGGGACAACAAAA TTTTCATTTATGTGGTAATGTCTCACTTGTAAGCTTCGTTTGCGCTCATG AGGTTTCCCGAGCACATAAGCACTCGTTTGCCAACACTTCCACGAAACAG CATATGCCAAGTGTTCACTCCCGATGAACTACGTTTTGTCTGTTGCCGCC AACAGGTGCCAGGCTCGGTTGGGGGTCAAGAAGGCGTTGTCGATGTGCTT CAGCCTCAATTCCGACGAGCTGCTGGCCGCTGGCCACAAGCACTTTAAAG TCTGGACGCTTTCTGGAGGCGGGCTCATGCAGGGGAAGCGAGGTCTGTTT GGCTCAGGCTCGAAGGTGAGGAGCGCACATCATAGCGAATGAATTTATGG GAGGCTCTCGAAGTATTGCATTGATCCTTTCGGCGTGACCCCGAGCCGCC GTCTGTGGTCTAGAACAACCTTGGAAGCACGTACCCTCCCCTGGCCCCCA CGCCATAGACACCGATTCAGCTGAACAAGGGACGTCATATCATGAAGTGA ACTATGCTAGAGTCTGTCCCTGGAGAAGGCGCTGGAGCAAGCAATGCCGA TGTATTCAGCCCCCGACGGAACTTTCTACAAGAAAAGCAAGTCGATTTGT CTGACCCTTTTGGTGCTTCGTCCGCCAAATCGCTTGGGATATAGGTGCAA GCCCTTACGTGTGCCGCGGCGATGTCGAACGGGGAGGGAGGGGGCTCCTC CTTCATCCTGGGCGGCTCCAGCGGCAGCCTGCTCAAGTGAGAACACGCGT GCTACATCACCTTCTTCATCGGCATCGTACTGACGACGAAAACATTTTAC CGAGACAAAGTCAGAATCTGCACACATACCTTCCAGACGTTGCATATCTG GGATCTATGTACACCCATAACCCTTCCTTTCAACGAAACACCCAAATTAT TTCATATAATGACGGATGATGTGAAAAGTGTTACACCGGGGGTGGGTCAA ATGAAGAGGATATGCTCGATGCGGTGGAGAGCTGAATGAAAACTGGAAAG TTCCAAGGTGAGATCGAAGCGCCGACACCTGGCAGATTCGTGGTTCGGTG TTGTCTCGTCAGGCAGCACTGATCTCTGATAAAGCAATGATGTTTTCCGG CGTTTCTTCGAACAGGCTCGATGGAGGCCGCAAGGTTTCCTCGGAGATCG AGGGCCATGAGGGACCTGTGTACGCGCTCTATGCCTACCCCGCGCCGGAC GGCTCAGGAACATGCCTGGTAACGGGAGGTGGTGACGGAAAGATCAAGAC TTGGGACGCTGAGGTGATTTCGAGAATATGGGGGCTGTCTGGGGCCATTG GAAACATCTCACTTTTGACAACGGACTTTAGAAAGTATTGTTATAACGTA GAAATCTTCGGACCGCGTAGGTTTTCGTGATACCTCGTGATCACGAAAAG GACCCCAAGAGCACGAACGAACATCCAACTTAAAAAGAGCATGGTGTGCG TAATCCAATCATTCGTAGCGTTTCCTGGCCGTTCGACGTATTTTCATAGA CAAAAGCGCGATACGCGCCGTGCCATAGGATCTATGTGAAGATCGTCGGC CGTTGCGAAGGGTCTGGCGACTTCCCGTTGCACGAAGTTCTTTCAGCCAT CAGTTACCGCGATTGAGGCATGCTCCCACAGAATTGACATTTCATATCGT CCAGCACCTCCGACAACTGCATTATTCATTGCCGATAATGCAAACCCTAC CCCAGGCAGACGTTACGCGTTGCCCATGCCAACGCCGGTCACCGGGCAAA GTCTTGTGTATTCGACAGAGTGAAATCACGTTTTCTTGCGAAGCCTATGA GAGAGCTCTGTTCACATAATGATTCATTGGCTCCGCCTGGAAAATGGATG AAAAATATCCCTGCAGCTTGGTATGGTGAACGAGTTTGATCTCGTGGGGA GGCCGTATCTATCGGGCGGGACCCCTTGCGTCCGGTCGGTGTGCTTGAGC GACCACTCGGACGGCAGGAAGATCCTCGTCGGAACATCTTGCAGTGAGGT ATGAATGCATGCTGCATGGCATGGTGTTCTCATGATTCGTCGGATCCCAA GTTTTCGGTTCTCTTGAGAATACCATGTATCAGACCATCGAATCGAAAAT CTGGAAGTCAACCTTTCGTCAAGGACTCGGGTGGGAGTCATAATCAGAAT GGAGACGAGCCCTTGGGGGCGAGGGGGGGAAGCTCCTGGCGATGACAGTC AGCAGATGAGATTTGAACAGATGTTTCTTCGAGTGGACACGAACACCTTC CAAGAAGTCAGGACAAGGACTATCCGCTCTGACCAGACCGACCACCGCCT GGAACACGCACGCTTGCCTCTAACAAATATGTGGAGGAGATGCAATAGCG ATTTTCGAGTGCATTCGAATTGTGCATGGACGCGATCATCGTACCTGCTC CACTCAGATTTTCGAGATTTCCACGAGCGAGGGGACGGATGTCAACGGCG GAGACTGCCTGATGCGGGGCCACTTCCGAGACCAGCTATGGGGTCTTGCG TCACACCCAGCAAAGGTGTGGTTTTGCGTAGTACGTGTATTCCTATAAAA CATGGTAGCGATTGGACAGCATTGCCCTTTCGATATCGGAAGTACAACTC GTGTCAAGGCTAGTTCGTGTCTCTGGTCTACGTCAGAAGATGGTATATCC ACACGTTGTACCTGCTCGCCTTGGATGCCACACAACGCTGATGCTGACAG TTTGTTTTGAACGAGAGGCAGCACCTCGACTCCTAATCCGTGTATCATCC CACGAACCCGACTGACACAGCCGCTCTACGTTAGCTCGGGCGATGAAGGC ATGCTGAAAGAGTGGAACGCGAGTACCCTGGCTCTCAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15906:41..3028-

>mRNA_Ecto-sp13_S_contig15906.4335.1 ID=mRNA_Ecto-sp13_S_contig15906.4335.1|Name=mRNA_Ecto-sp13_S_contig15906.4335.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=495bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15906:41..3028- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGTTCCGCTGGGAGTCTGGCCTTCTACGGTGCCAGGCTCGGTTGGG
GGTCAAGAAGGCGTTGTCGATGTGCTTCAGCCTCAATTCCGACGAGCTGC
TGGCCGCTGGCCACAAGCACTTTAAAGTCTGGACGCTTTCTGGAGGCGGG
CTCATGCAGGGGAAGCGAGGTCTGTTTGGCTCAGGCTCGAAGGTGCAAGC
CCTTACGTGTGCCGCGGCGATGTCGAACGGGGAGGGAGGGGGCTCCTCCT
TCATCCTGGGCGGCTCCAGCGGCAGCCTGCTCAAGCTCGATGGAGGCCGC
AAGGTTTCCTCGGAGATCGAGGGCCATGAGGGACCTGTGTACGCGCTCTA
TGCCTACCCCGCGCCGGACGGCTCAGGAACATGCCTGGTAACGGGAGGTG
GTGACGGAAAGATCAAGACTTGGGACGCTGAGCTTGGTATGGTGAACGAG
TTTGATCTCGTGGGGAGGCCGTATCTATCGGGCGGGACCCCTTGA
back to top