prot_Ecto-sp13_S_contig15904.4334.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig15904.4334.1
Unique Nameprot_Ecto-sp13_S_contig15904.4334.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length74
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15904.4334.1 vs. uniprot
Match: D7FRQ0_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRQ0_ECTSI)

HSP 1 Score: 131 bits (330), Expect = 1.610e-35
Identity = 68/74 (91.89%), Postives = 69/74 (93.24%), Query Frame = 0 
Query:    1 AGDAAAPAGGAQPSNTPRAREGSSLPLLSGMAAMMSMIFILGDLVNKRMPHPVSTGVFLLSASYCVAMLRRQWA 74
            AGDAAAPAG  QP+NTPR REGSSLPLLSGMAAMMSMIFILGDLVNKRM HPVSTGVFLLS SYCVAMLRRQWA
Sbjct:   78 AGDAAAPAGSEQPNNTPRGREGSSLPLLSGMAAMMSMIFILGDLVNKRMLHPVSTGVFLLSVSYCVAMLRRQWA 151
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BLAST of mRNA_Ecto-sp13_S_contig15904.4334.1 vs. uniprot
Match: A0A6H5JDD0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDD0_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 5.690e-28
Identity = 56/74 (75.68%), Postives = 63/74 (85.14%), Query Frame = 0 
Query:    1 AGDAAAPAGGAQPSNTPRAREGSSLPLLSGMAAMMSMIFILGDLVNKRMPHPVSTGVFLLSASYCVAMLRRQWA 74
            AGDAAAPAGGAQ + TPR  EGSSLP L+G+AA++S IFI+GDL+NKRM HP S  VFLLS SYCVAMLRRQWA
Sbjct:   60 AGDAAAPAGGAQLNTTPRPLEGSSLPFLAGLAAIISTIFIVGDLLNKRMLHPASIVVFLLSVSYCVAMLRRQWA 133
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15904.4334.1 vs. uniprot
Match: D7FRQ1_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRQ1_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 1.600e-25
Identity = 56/74 (75.68%), Postives = 61/74 (82.43%), Query Frame = 0 
Query:    1 AGDAAAPAGGAQPSNTPRAREGSSLPLLSGMAAMMSMIFILGDLVNKRMPHPVSTGVFLLSASYCVAMLRRQWA 74
            AGDAA PAGGAQ   TPRA EGSSLP L+G+A ++S IFILGDL+NKRM HP S  VFLLS SYCVAMLRRQWA
Sbjct:   60 AGDAAGPAGGAQLYTTPRALEGSSLPFLAGLAGIISTIFILGDLLNKRMLHPASIVVFLLSVSYCVAMLRRQWA 133
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15904.4334.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FRQ0_ECTSI1.610e-3591.89RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JDD0_9PHAE5.690e-2875.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRQ1_ECTSI1.600e-2575.68RING-type domain-containing protein n=1 Tax=Ectoca... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 70..74
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 25..45
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 46..50
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..24
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 51..69
NoneNo IPR availableTMHMMTMhelixcoord: 23..45

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15904contigEcto-sp13_S_contig15904:2209..3529 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15904.4334.1mRNA_Ecto-sp13_S_contig15904.4334.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig15904 2209..3530 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig15904.4334.1 ID=prot_Ecto-sp13_S_contig15904.4334.1|Name=mRNA_Ecto-sp13_S_contig15904.4334.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=74bp
AGDAAAPAGGAQPSNTPRAREGSSLPLLSGMAAMMSMIFILGDLVNKRMP
HPVSTGVFLLSASYCVAMLRRQWA
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