mRNA_Ecto-sp13_S_contig15904.4334.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15904.4334.1
Unique NamemRNA_Ecto-sp13_S_contig15904.4334.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15904.4334.1 vs. uniprot
Match: D7FRQ0_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRQ0_ECTSI)

HSP 1 Score: 131 bits (330), Expect = 1.610e-35
Identity = 68/74 (91.89%), Postives = 69/74 (93.24%), Query Frame = 1 
Query:    1 AGDAAAPAGGAQPSNTPRAREGSSLPLLSGMAAMMSMIFILGDLVNKRMPHPVSTGVFLLSASYCVAMLRRQWA 222
            AGDAAAPAG  QP+NTPR REGSSLPLLSGMAAMMSMIFILGDLVNKRM HPVSTGVFLLS SYCVAMLRRQWA
Sbjct:   78 AGDAAAPAGSEQPNNTPRGREGSSLPLLSGMAAMMSMIFILGDLVNKRMLHPVSTGVFLLSVSYCVAMLRRQWA 151
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BLAST of mRNA_Ecto-sp13_S_contig15904.4334.1 vs. uniprot
Match: A0A6H5JDD0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDD0_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 5.690e-28
Identity = 56/74 (75.68%), Postives = 63/74 (85.14%), Query Frame = 1 
Query:    1 AGDAAAPAGGAQPSNTPRAREGSSLPLLSGMAAMMSMIFILGDLVNKRMPHPVSTGVFLLSASYCVAMLRRQWA 222
            AGDAAAPAGGAQ + TPR  EGSSLP L+G+AA++S IFI+GDL+NKRM HP S  VFLLS SYCVAMLRRQWA
Sbjct:   60 AGDAAAPAGGAQLNTTPRPLEGSSLPFLAGLAAIISTIFIVGDLLNKRMLHPASIVVFLLSVSYCVAMLRRQWA 133
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BLAST of mRNA_Ecto-sp13_S_contig15904.4334.1 vs. uniprot
Match: D7FRQ1_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRQ1_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 1.600e-25
Identity = 56/74 (75.68%), Postives = 61/74 (82.43%), Query Frame = 1 
Query:    1 AGDAAAPAGGAQPSNTPRAREGSSLPLLSGMAAMMSMIFILGDLVNKRMPHPVSTGVFLLSASYCVAMLRRQWA 222
            AGDAA PAGGAQ   TPRA EGSSLP L+G+A ++S IFILGDL+NKRM HP S  VFLLS SYCVAMLRRQWA
Sbjct:   60 AGDAAGPAGGAQLYTTPRALEGSSLPFLAGLAGIISTIFILGDLLNKRMLHPASIVVFLLSVSYCVAMLRRQWA 133
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15904.4334.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FRQ0_ECTSI1.610e-3591.89RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JDD0_9PHAE5.690e-2875.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRQ1_ECTSI1.600e-2575.68RING-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15904contigEcto-sp13_S_contig15904:2209..3530 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score132.5
Seed ortholog evalue8.1e-29
Seed eggNOG ortholog2880.D7FRQ0
Model size225
KEGG koko:K15692,ko:K19045
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.protein modification by small protein conjugation or removal
EggNOG OGsKOG4628@1,KOG4628@2759
EC2.3.2.27
Cds size222
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462840.3448844-CDS-Ecto-sp13_S_contig15904:2208..23101681462840.3448844-CDS-Ecto-sp13_S_contig15904:2208..2310Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15904 2209..2310 +
1681462840.3618195-CDS-Ecto-sp13_S_contig15904:3409..35291681462840.3618195-CDS-Ecto-sp13_S_contig15904:3409..3529Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15904 3410..3529 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15904.4334.1prot_Ecto-sp13_S_contig15904.4334.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15904 2209..3529 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15904.4334.1

>prot_Ecto-sp13_S_contig15904.4334.1 ID=prot_Ecto-sp13_S_contig15904.4334.1|Name=mRNA_Ecto-sp13_S_contig15904.4334.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=74bp
AGDAAAPAGGAQPSNTPRAREGSSLPLLSGMAAMMSMIFILGDLVNKRMP
HPVSTGVFLLSASYCVAMLRRQWA
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mRNA from alignment at Ecto-sp13_S_contig15904:2209..3530+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15904.4334.1 ID=mRNA_Ecto-sp13_S_contig15904.4334.1|Name=mRNA_Ecto-sp13_S_contig15904.4334.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1322bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15904:2209..3530+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCTGGCGACGCTGCTGCCCCTGCTGGCGGCGCGCAGCCTAGTAACACGCC
GCGAGCACGGGAAGGATCAAGTCTTCCTCTTCTGTCTGGAATGGCGGCTA
TGGTGCGCTGGCTCTCTCTCTCTTGTTCTTTTGTCAGCCCCTTGCGGCAA
TCTCAGTGGCATTTTTTCGCCTCTCGTCCCATTTCTTCTTGGCGCCCACT
CTCTACTTCAGAGCTATATGTTGGAAGAACCGGGTGCGGCCACACCAAAG
GAAGACCTCTCGTGCTTTTACCTTTAATGGTACAATTTAGCGTACAACTT
CGTACCACGTACTGCTGTACGTATTGTTTACATCAGACTCCCTGTAGAGG
CGGAGAGACGGCAACCTCCGTACATAAAAGCAAGCCGATTCAAAGCTCGA
TTGTTCCACAACCAAGATTGTGCCAGCACCAAAATGTTGCTTCTGGAAAC
TTCTCGTCGAGGGCTTTCCATGGAATTATCGATTTCTTCCCGCGACTCCC
TTGGTTGTGGAGCAATCGAGCTTTGACAATCGGTCTACGGGTGCCATCTC
TCCTCCTCTTACGGGTACATGTAGTCGTCGATAGCTTGCGAGTAGTCTAC
TGTACTCCTTTCGAATCCCCCCGATATCTCAACGACGCAACGACGTTTTG
TCTTCGAAAATATCTAAAATATTGCAGCTGTTTTCCAAGCAAGAAGTTGC
CGACTCCCACACTCCGTACCAATACGAAGGCAATGAATGTCGATCTGAAC
TGTTGCCTTGAGTCGACGTTGTTGGAACGAAGGCTGCCCATACGTCTTGC
CTCGGTGCGCCTGGGTTTGTTGGGGATCATCCAATCAGGCGTCGTGTACC
GCCTGTCGTACCTGTCCGAGCGATAACCCGTGTTTCTCCTGCTGTTGGGC
AGAGATCATTGTCCAACGTTAGTCCTTCGTAGCCTGGGTGCCACGTTGTG
CATATGTAGTACCAAGACCGTTGAAAAACATTTCAACATCGCGGCATCAT
TGGAGATCAACCAACATCCCGTGTATTCCCCCCCCCACACGTAAATTGAC
CAGCCGACACGCCGATACTGTACGAGAAACAAAGAATTCCCGGTATTTTG
CGTCATCTCTATCGATGTGCGTCGTCGTCAATGGCTTTGTTCGTGCTCGC
CCACGCGTACATACGTCGTATCCTCCCTCTCCCCGCTCTTGCCAAGGACA
GATGTCCATGATCTTCATCCTCGGCGACCTCGTGAACAAGCGCATGCCCC
ATCCTGTTAGCACCGGGGTGTTTCTGCTGTCGGCGAGCTACTGCGTGGCA
ATGCTGAGGCGACAGTGGGCAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15904:2209..3530+

>mRNA_Ecto-sp13_S_contig15904.4334.1 ID=mRNA_Ecto-sp13_S_contig15904.4334.1|Name=mRNA_Ecto-sp13_S_contig15904.4334.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=222bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15904:2209..3530+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCTGGCGACGCTGCTGCCCCTGCTGGCGGCGCGCAGCCTAGTAACACGCC
GCGAGCACGGGAAGGATCAAGTCTTCCTCTTCTGTCTGGAATGGCGGCTA
TGATGTCCATGATCTTCATCCTCGGCGACCTCGTGAACAAGCGCATGCCC
CATCCTGTTAGCACCGGGGTGTTTCTGCTGTCGGCGAGCTACTGCGTGGC
AATGCTGAGGCGACAGTGGGCA
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