mRNA_Ecto-sp13_S_contig15904.4333.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15904.4333.1
Unique NamemRNA_Ecto-sp13_S_contig15904.4333.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15904.4333.1 vs. uniprot
Match: D7FRQ1_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRQ1_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 4.490e-13
Identity = 42/51 (82.35%), Postives = 45/51 (88.24%), Query Frame = 2 
Query:  134 MSATVFNAPASAASAAATTIATADVDAPTLDPTRDQLRPGGHATTSEDAAA 286
            MSA V NAPASAASAA+TT+AT DV+AP LDPTRDQLRPGGH TTS DAAA
Sbjct:    1 MSAAVSNAPASAASAASTTMATDDVEAPALDPTRDQLRPGGHPTTSGDAAA 51
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BLAST of mRNA_Ecto-sp13_S_contig15904.4333.1 vs. uniprot
Match: D7FRQ0_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRQ0_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 8.640e-12
Identity = 45/66 (68.18%), Postives = 47/66 (71.21%), Query Frame = 2 
Query:   89 VFLSGGEVDARRGAEMSATVFNAPASAASAAATTIATADVDAPTLDPTRDQLRPGGHATTSEDAAA 286
            VFLSGGEVDARR AEMSA V +APA               +APTLDPTRDQLRPGGHATTS DAAA
Sbjct:    5 VFLSGGEVDARRRAEMSAAVSHAPAXXXXXXXXXXXX-XXEAPTLDPTRDQLRPGGHATTSGDAAA 69
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BLAST of mRNA_Ecto-sp13_S_contig15904.4333.1 vs. uniprot
Match: A0A6H5JDD0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDD0_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 8.100e-11
Identity = 39/51 (76.47%), Postives = 40/51 (78.43%), Query Frame = 2 
Query:  134 MSATVFNAPASAASAAATTIATADVDAPTLDPTRDQLRPGGHATTSEDAAA 286
            MSA V NAPASAASAAAT     DV+APTL PTRDQLRPGGHAT   DAAA
Sbjct:    1 MSAAVSNAPASAASAAATMATAGDVEAPTLYPTRDQLRPGGHATMPGDAAA 51
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15904.4333.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FRQ1_ECTSI4.490e-1382.35RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D7FRQ0_ECTSI8.640e-1268.18RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JDD0_9PHAE8.100e-1176.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15904contigEcto-sp13_S_contig15904:1640..2189 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size291
Hectar predicted targeting categoryother localisation
Exons2
Cds size213
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462840.2749996-UTR-Ecto-sp13_S_contig15904:1639..16511681462840.2749996-UTR-Ecto-sp13_S_contig15904:1639..1651Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15904 1640..1651 +
1681462840.3000338-UTR-Ecto-sp13_S_contig15904:2123..21891681462840.3000338-UTR-Ecto-sp13_S_contig15904:2123..2189Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15904 2124..2189 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462840.283385-CDS-Ecto-sp13_S_contig15904:1651..17191681462840.283385-CDS-Ecto-sp13_S_contig15904:1651..1719Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15904 1652..1719 +
1681462840.2915688-CDS-Ecto-sp13_S_contig15904:1978..21231681462840.2915688-CDS-Ecto-sp13_S_contig15904:1978..2123Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15904 1979..2123 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15904.4333.1prot_Ecto-sp13_S_contig15904.4333.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15904 1652..2123 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15904.4333.1

>prot_Ecto-sp13_S_contig15904.4333.1 ID=prot_Ecto-sp13_S_contig15904.4333.1|Name=mRNA_Ecto-sp13_S_contig15904.4333.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=71bp
MYHRGSPVASLPGVATHVWRLVTVLGVPLRGRGRRTKRSGDVGDCVQCTG
FGRFSSCNNHSNSRRRRTYS*
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mRNA from alignment at Ecto-sp13_S_contig15904:1640..2189+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15904.4333.1 ID=mRNA_Ecto-sp13_S_contig15904.4333.1|Name=mRNA_Ecto-sp13_S_contig15904.4333.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=550bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15904:1640..2189+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCAATCGAGATATGTATCACCGCGGCTCACCTGTCGCCAGCCTCCCTGG
TGTCGCCACACACGTTTGGCGACTTGTCACGTAAGCTTCGCTATAAGCTT
GCCGAAAAATATATAGCCGGCGCCGCTTACTACAGCTGTCCCCGACCGCC
GAACCTCCGTTCGGTACCCACAGCAGTAGCCCTGATGCAGAGCACGTTGA
AATATTGTGCGAAGGTTGAACCTTGAAATTGCAACCGTATCCCTCCACCC
CCACCCGCTCCACTCGCACGCGCGCACGCTGCTCACGTCAGTGGTTCCCG
TCGCCCTCCCTCCCTGCTACCGCTGCTGCGCCCAAACAGTGTATTAGGTG
TTCCTCTCCGGGGGCGAGGTAGACGCACGAAGAGGAGCGGAGATGTCGGC
GACTGTGTTCAATGCACCGGCTTCGGCCGCTTCAGCAGCTGCAACAACCA
TAGCAACAGCCGACGTCGACGCACCTACTCTTGACCCCACACGCGACCAA
CTGCGGCCAGGAGGGCACGCGACGACGTCGGAAGATGCTGCAGCGGCAGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15904:1640..2189+

>mRNA_Ecto-sp13_S_contig15904.4333.1 ID=mRNA_Ecto-sp13_S_contig15904.4333.1|Name=mRNA_Ecto-sp13_S_contig15904.4333.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=213bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15904:1640..2189+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTATCACCGCGGCTCACCTGTCGCCAGCCTCCCTGGTGTCGCCACACA
CGTTTGGCGACTTGTCACTGTATTAGGTGTTCCTCTCCGGGGGCGAGGTA
GACGCACGAAGAGGAGCGGAGATGTCGGCGACTGTGTTCAATGCACCGGC
TTCGGCCGCTTCAGCAGCTGCAACAACCATAGCAACAGCCGACGTCGACG
CACCTACTCTTGA
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