mRNA_Ecto-sp13_S_contig1590.4330.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1590.4330.1
Unique NamemRNA_Ecto-sp13_S_contig1590.4330.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1590.4330.1 vs. uniprot
Match: D7G965_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G965_ECTSI)

HSP 1 Score: 231 bits (589), Expect = 1.130e-73
Identity = 137/204 (67.16%), Postives = 144/204 (70.59%), Query Frame = 1 
Query:   94 MTTAAHQFATAALT--AARAHFASGGGSVSLGQNKTAILLHVVCIAALMVGGASADPSPAMAAIADDLVIGEEACSSRWDANCDGDTMDEVLFWLALWIWRVYRLYACLRSLWAVAVWLTGTAFFVDARRRASSFLIGRGGGASGVAARMPPLGGLGGDGGVAVPPIMRNLGEEEGDVELAVISPRSPVAVAAVVEQHPLPLPQ 699
            MTTAAHQ AT AL   AA AHFAS GGSVSLG NKTA+   VVC+AAL+VGGA AD SPAMAA ADDLVIGEEACSSRWDANCDGDTMDEVLFWL LWIWR Y+LYAC RS+ A AVWLTGTAFF+DAR                                     IMRNL E+E DVELAVISPRSPVA AAV EQHPLPLPQ
Sbjct:    1 MTTAAHQSATTALALAAALAHFASSGGSVSLGHNKTAL---VVCMAALLVGGAWADSSPAMAATADDLVIGEEACSSRWDANCDGDTMDEVLFWLVLWIWRGYKLYACARSVRAAAVWLTGTAFFIDARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIMRNLEEKEDDVELAVISPRSPVAAAAVAEQHPLPLPQ 201
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BLAST of mRNA_Ecto-sp13_S_contig1590.4330.1 vs. uniprot
Match: A0A6H5K376_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K376_9PHAE)

HSP 1 Score: 191 bits (486), Expect = 4.540e-59
Identity = 112/161 (69.57%), Postives = 114/161 (70.81%), Query Frame = 1 
Query:  220 IAALMVGGASADPSPAMAAIADDLVIGEEACSSRWDANCDGDTMDEVLFWLALWIWRVYRLYACLRSLWAVAVWLTGTAFFVDARRRASSFLIGRGGGA-SGVAARMPPLGGLGGDGGVAVPPIMRNLGEEEGDVELAVISPRSPVAVAAVVEQHPLPLPQ 699
            +AALMVGGASADPSPAMAA ADDLVIGEEACSSRWDANCDGDTMDEVLFWLALWIWR Y+LYA                                GGGA  G       LGGLGGDGGVAVPPIMRNL EEE DVELAVISPRSPVA AA VEQHPLPLPQ
Sbjct:    1 MAALMVGGASADPSPAMAATADDLVIGEEACSSRWDANCDGDTMDEVLFWLALWIWRAYKLYA--------------------------------GGGALRGQQLACRHLGGLGGDGGVAVPPIMRNLEEEEDDVELAVISPRSPVAAAAAVEQHPLPLPQ 129
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1590.4330.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G965_ECTSI1.130e-7367.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K376_9PHAE4.540e-5969.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1590contigEcto-sp13_S_contig1590:756..3773 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size702
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-13_003240.1
Cds size702
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462839.9783304-CDS-Ecto-sp13_S_contig1590:755..9131681462839.9783304-CDS-Ecto-sp13_S_contig1590:755..913Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1590 756..913 +
1681462839.995412-CDS-Ecto-sp13_S_contig1590:1462..16021681462839.995412-CDS-Ecto-sp13_S_contig1590:1462..1602Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1590 1463..1602 +
1681462840.0063245-CDS-Ecto-sp13_S_contig1590:2105..22151681462840.0063245-CDS-Ecto-sp13_S_contig1590:2105..2215Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1590 2106..2215 +
1681462840.0234895-CDS-Ecto-sp13_S_contig1590:3479..37731681462840.0234895-CDS-Ecto-sp13_S_contig1590:3479..3773Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1590 3480..3773 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1590.4330.1prot_Ecto-sp13_S_contig1590.4330.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1590 756..3773 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1590.4330.1

>prot_Ecto-sp13_S_contig1590.4330.1 ID=prot_Ecto-sp13_S_contig1590.4330.1|Name=mRNA_Ecto-sp13_S_contig1590.4330.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=234bp
SRISVRLALYKVEQLVLRVQEYHFEKGTKPKMTTAAHQFATAALTAARAH
FASGGGSVSLGQNKTAILLHVVCIAALMVGGASADPSPAMAAIADDLVIG
EEACSSRWDANCDGDTMDEVLFWLALWIWRVYRLYACLRSLWAVAVWLTG
TAFFVDARRRASSFLIGRGGGASGVAARMPPLGGLGGDGGVAVPPIMRNL
GEEEGDVELAVISPRSPVAVAAVVEQHPLPLPQ*
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mRNA from alignment at Ecto-sp13_S_contig1590:756..3773+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1590.4330.1 ID=mRNA_Ecto-sp13_S_contig1590.4330.1|Name=mRNA_Ecto-sp13_S_contig1590.4330.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3018bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1590:756..3773+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGCAGAATATCCGTCCGTCTCGCTTTATACAAAGTTGAACAACTTGTGCT
GCGTGTTCAAGAATATCACTTCGAGAAAGGAACCAAGCCGAAGATGACGA
CTGCTGCCCACCAGTTCGCAACCGCCGCCTTGACCGCTGCCCGGGCTCAT
TTCGCGAGGTATGTGGGCGCGCGCTTGATCTTGAGCTACCAACCATACGC
CTCCTCTCACTATGAAAATCAAAACAAAAACGGAAAGACGACGTACCTAA
TCGAGATATTTCACGATAGCAGTGCCTCGTTCAACAATGGCAGCAAGCGT
TCGGCTTCGTTTTCTAAATCTGGGCCTCAACATCTTGCCAAGGCATGCCG
AGCGCCCGATTAGAGTCGGAAGGGGAGGGGGGGAGGGCGGCTGCCATGAG
TGCGGAGCCCAAGATCACTCGTGAGGTACATCGCGAGACTGATCGTTGAT
TGTTGCAACGATTCGGAGCGTTTGGCGGGTTGACGTGCGTTCGTCCCCGC
AAAGGGGCTCCGGACGGTACCGTAGTGTGCAGAGGGGGCGAGGCGGGGGG
CGTACTCCTATGTTTTGCATGCCTTAGCGGCCGCACAGACCATAGACCAA
AGGAGGGAGAGCGGGGGGGGGGATGAATCGTGTGCCAGCACTGTTGAGAT
TTTTCTCTCCCTCTCCGACCGCTTATTCCCGCCCTTTCTCCACTTATCTT
TCAACAGTGGTGGCGGCAGCGTCAGCCTTGGCCAAAACAAGACCGCGATC
CTTCTGCATGTTGTGTGCATTGCAGCGTTGATGGTTGGGGGAGCTTCTGC
TGACCCAAGCCCGGCAATGGCGGCAATCGCTGACGACCTCGTCATCGGTA
AGCCCAACCTCGCGCGACACCCACGAAGTCTTGCGACACGTTTTGTACGT
ACGTTCCATGCGGAAAATCGTGCGAAGGGAATGAAGAGACTCGGCCGTCC
AGCGCATTACGCCGGTTCGTCGGCCTGTGTTCTGCTCTGGTTTCCACGGA
ACCTCTTGGGCAGAAACACCCGCTCTCTCTGCTCAATTTCACCCACTGTT
GCTTACCGCCTGACCGCGTGTTCAGCGTCCCTTGTTAAGACAGAGCGGTG
GTGCGTCTCCAGCTCCTTTTCATGTTGCAATATTTGGCACTATCGTAGCT
TCAGGTTAGACTTTCGTAGTCAGCCTAAGCAGTTCCAATTATTGGCGATG
TCGCTTTTTCATGTCGTAGATCGATCTCCGTCGTATTGTAGATCTCGTAG
ATCCAGCAAAAATCTCTGGCTGAGCGTTTTCACCTGGTCCCTGGCTCAAC
CCCTGATGTGTTGTGCTGTTACCTATGACCCCGATGTTGATGCTTTCCAG
GGGAAGAGGCTTGCAGCAGCCGCTGGGACGCGAACTGTGACGGAGACACG
ATGGACGAGGTTCTGTTCTGGCTGGCCTTATGGATATGGAGAGTCTACAG
ACTCTACGCGGTGAGCATTCTCACGCGTGTTGTTCTGGCTGCTGGTGCAC
TACAGAACGTGCCCGCACTCGTGAACGTCTAAACGTAGGTGGCATGAGAT
ACCACCCCCCCCCCCTGGGCCGATTTTCAAAGTTCTTTTTTTCCCGCGGG
ACAAAAATCGAAGCGCGGCGAACGGCGGCCTTATGGCCGGCTCGTCGAGA
GCTTTCTGAAAACGTATCGGATCATTTATGCATCCTCTTTGTCGTTTGAG
TATTCGAGCTTTGAAAATTGGTCCAGCGGGTGTGGAATCTTGTGTCATTC
CGCCAACGGTAGCTTTGGCCGAGGCTGGGGTTCTTACCGTATTCCTAGGC
TCATGCTACGAATGGTCGCTATATAAGTTTCAGTGTAGAGGTTATCAACC
GAGCTAAAAACATGGTGCTCAAGTTCGTAAATTTTGAGTTTTTTGGAGGT
TCAACTTCTGAACTCCTCGGTTCTCACTGTAGGCGTTCTGTACGCGTTGT
TCCTCACGACCTCGTGGCGTGTTTTTGTTTGCTTTCACAACATCTCTGCA
AGAAGACAGGACTCGTCGCACCAAACAAAGGTTGATGCTTGCCTTTGCCG
AATTTTTTTGAAGAGGCGCCATCTTTACGACCTCGTCATGCATTAGCCTT
CGCAACTCTAGTAGAAAGAGAGAATCGTCGCCTTTTCCACGAAGAAGGTT
GATGCTGCTTGCCTCTGTAATGTTGCCGAGGTGTCGTGCGTAGCATTTCA
TGTGTCGAGGAATGTTGCACGCGTGTTGTTCCATGGTACCACGACGTCGT
GGTGTAATAGTCGTCGAAACGTCATTGCCTTCGCCGCTCTGTAGCGGACG
GGCTCATCGCCATAAAACGAAAGCAGTGTGATGCGTTGACGTTCCGTAGC
AGCGTCAGGCGTGTTCCCATGTTTTTTTTGTTTTTTTGACGATGCCGTCC
TGGCTGGTGTGGTACTCGCCTCCTTCTCCGTAACAGCAAGCAAGCGTGAT
GTATAGTCCAGATTCATTCGCCGTTGGTTGCCTTCTTCCGCGGAGCCCCC
TTTTTTGACAATAGGTATCGATTGACAACCGTCCCAGGTATCGTTTCTCC
GTCACGGGGAAAAAACCATGCATGCTCTCGCCAAAAATACCGTACAACAA
CAACCCTACAGAGAAATAATAGCAGTAAAAGTGCAGCTAGCTCTCCACTT
ATTCCGTCCTCCACCGCCCACCCACCCCGCGCGCACATTTTCCCCGACGG
CCGGCCCCGATCGTTTGCTCCAAGTGCTTGCGGAGCCTGTGGGCTGTGGC
TGTGTGGCTGACGGGAACGGCCTTCTTCGTCGATGCGAGGAGAAGGGCGT
CGTCGTTTCTCATCGGCAGGGGGGGGGGGGCTTCGGGGGTGGCAGCTCGT
ATGCCGCCACTTGGTGGCCTGGGAGGGGACGGCGGCGTTGCCGTCCCCCC
CATCATGCGGAACTTGGGGGAGGAGGAGGGCGATGTTGAGCTTGCCGTTA
TCTCGCCGCGGTCGCCGGTAGCGGTGGCGGCGGTGGTGGAGCAGCATCCG
CTTCCGTTGCCGCAGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1590:756..3773+

>mRNA_Ecto-sp13_S_contig1590.4330.1 ID=mRNA_Ecto-sp13_S_contig1590.4330.1|Name=mRNA_Ecto-sp13_S_contig1590.4330.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=702bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1590:756..3773+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGCAGAATATCCGTCCGTCTCGCTTTATACAAAGTTGAACAACTTGTGCT
GCGTGTTCAAGAATATCACTTCGAGAAAGGAACCAAGCCGAAGATGACGA
CTGCTGCCCACCAGTTCGCAACCGCCGCCTTGACCGCTGCCCGGGCTCAT
TTCGCGAGTGGTGGCGGCAGCGTCAGCCTTGGCCAAAACAAGACCGCGAT
CCTTCTGCATGTTGTGTGCATTGCAGCGTTGATGGTTGGGGGAGCTTCTG
CTGACCCAAGCCCGGCAATGGCGGCAATCGCTGACGACCTCGTCATCGGG
GAAGAGGCTTGCAGCAGCCGCTGGGACGCGAACTGTGACGGAGACACGAT
GGACGAGGTTCTGTTCTGGCTGGCCTTATGGATATGGAGAGTCTACAGAC
TCTACGCGTGCTTGCGGAGCCTGTGGGCTGTGGCTGTGTGGCTGACGGGA
ACGGCCTTCTTCGTCGATGCGAGGAGAAGGGCGTCGTCGTTTCTCATCGG
CAGGGGGGGGGGGGCTTCGGGGGTGGCAGCTCGTATGCCGCCACTTGGTG
GCCTGGGAGGGGACGGCGGCGTTGCCGTCCCCCCCATCATGCGGAACTTG
GGGGAGGAGGAGGGCGATGTTGAGCTTGCCGTTATCTCGCCGCGGTCGCC
GGTAGCGGTGGCGGCGGTGGTGGAGCAGCATCCGCTTCCGTTGCCGCAGT
GA
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