mRNA_Ecto-sp13_S_contig159.4329.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig159.4329.1 vs. uniprot
Match: D8LDU8_ECTSI (DUSP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDU8_ECTSI) HSP 1 Score: 582 bits (1501), Expect = 2.550e-201 Identity = 297/335 (88.66%), Postives = 302/335 (90.15%), Query Frame = 1
Query: 169 LCLPLSARLAPTTLGDQNNHAGFMATVFGESGPTNVEVLNHPTRRKSKGAAGPPGPSRRMSADSEAVAAEAGDHFEMLPPSGAQAPRLPQRPTMVQAPLSSGSDRGRGIERWSSSSNRIMASSKVTASRRFAQPLASEGHGSVFPVGLPLSKRRAFEVEIMKRFDRRVFRPSLVRVAGIPVLDVNTHVGEFWFIIDAIWMSAWVNFVMGKSGPPGPISNHNLFTRYTGNRRESMLVHHAASSARGVMASRPDLKLKEGLRKLKDYRAVHPLVWYLFREIYSADDAPELCRWKADIYLAEVQITRKLKCCEEAHTKAVYELRRFSTKIKEDMGMGE 1173
L L LS P G++ + FMATVFGESGPTNVEVLNHPTRRKSKG AGPPGPSRRMSADS AVAAEAGDHFEM+PPSGAQAPRLPQRPTMVQAPLSSGSDRGRGIERWSSSS+RIMASSKVTASRRFAQPLASEGHGSVFPVGLPLSKRRAFEVEIMKRFDR LDVNTHVGEFWFIIDAIWMS WVNFVMGKSGPPGPISNHNLFT YTGNRRESMLVHHAASSARGVMASRPDLKLKEGLRKLKDYRAVHPLVWYLFREIYSADDAPELCRWKADIYLAEVQITRKLKCCE AHTKAVYELRRFSTKIKEDMGMGE
Sbjct: 25 LLLELSFNQRPPAAGNRVSLRSFMATVFGESGPTNVEVLNHPTRRKSKGTAGPPGPSRRMSADSAAVAAEAGDHFEMMPPSGAQAPRLPQRPTMVQAPLSSGSDRGRGIERWSSSSSRIMASSKVTASRRFAQPLASEGHGSVFPVGLPLSKRRAFEVEIMKRFDR---------------LDVNTHVGEFWFIIDAIWMSTWVNFVMGKSGPPGPISNHNLFTHYTGNRRESMLVHHAASSARGVMASRPDLKLKEGLRKLKDYRAVHPLVWYLFREIYSADDAPELCRWKADIYLAEVQITRKLKCCEGAHTKAVYELRRFSTKIKEDMGMGE 344
BLAST of mRNA_Ecto-sp13_S_contig159.4329.1 vs. uniprot
Match: A0A6H5JRW1_9PHAE (DUSP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRW1_9PHAE) HSP 1 Score: 550 bits (1418), Expect = 2.380e-189 Identity = 278/311 (89.39%), Postives = 286/311 (91.96%), Query Frame = 1
Query: 232 GFMATVFGESGPTNVEVLNHPTRRKSKGAAGPPGPSRRMSADSEAVAAEAGDHFEMLPPSGAQAPRLPQRPTMVQAPLSSGSDRGRGIERWSSSSNRIMASSKVTASRRFAQPLASEGHGSVFPVGLPLSKRRAFEVEIMKRFDRRVFRPSLVRVAGIPVLDVNTHVGEFWFIIDAIWMSAWVNFVMGKSGPPGPISNHNLFTRYTGNRRESMLVHHAASSARGVMASRPDLKLKEGLRKLKDYRAVHPLVWYLFREIYSADDAPELCRWKADIYLAEVQITRKLKCCEEAHTKAVYELRRFSTKIKEDMG 1164
GFMATVFGESGPTNVEVLNHPTRR+S GA G PGP+RRMSADSEAVAAEAGDHFEMLP SG QAPRLPQRPT VQAPLSSGSDRGRGIERWSSSS+RIMASSKVTASRRFAQPLASEGHGSVFPV LPLSKRRAFEVEI+KRFDRR +LDVNTHVGEFWFIIDAIWMS WVNFVMGKSGPPGPISNHNLFT Y+GNRRESMLVHHAASSARGVMASRPDLKLK+GLRKLKDYRAVHPLVWYLFREIYSADDAPELCRWKA+IY AEVQITRKLKCCEEAHTKAVYELRRF KIKEDMG
Sbjct: 8 GFMATVFGESGPTNVEVLNHPTRRQSNGAPGAPGPNRRMSADSEAVAAEAGDHFEMLPTSGTQAPRLPQRPTTVQAPLSSGSDRGRGIERWSSSSSRIMASSKVTASRRFAQPLASEGHGSVFPVELPLSKRRAFEVEIIKRFDRRR-----------QLLDVNTHVGEFWFIIDAIWMSTWVNFVMGKSGPPGPISNHNLFTHYSGNRRESMLVHHAASSARGVMASRPDLKLKDGLRKLKDYRAVHPLVWYLFREIYSADDAPELCRWKAEIYQAEVQITRKLKCCEEAHTKAVYELRRFCAKIKEDMG 307
BLAST of mRNA_Ecto-sp13_S_contig159.4329.1 vs. uniprot
Match: D7FUK6_ECTSI (DUSP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUK6_ECTSI) HSP 1 Score: 159 bits (402), Expect = 5.830e-38 Identity = 96/275 (34.91%), Postives = 128/275 (46.55%), Query Frame = 1
Query: 559 FAQPLASEGHGSVFPVGLPLSK-----------------------------------------------------------RRAFEVEIMKRFDRRVFRPSLVRVAGIPVLDVNTHVGEFWFIIDAIWMSAWVNFVMGKSGPPGPISNHNLFTRYTGNRRESMLVHHAASSAR---------------GVMASRPDL---KLKEGLRKLKDYRAVHPLVWYLFREIYSADDAPELCRWKADIYLAEVQITRKLKCCEEAHTKAVYELRRFSTKIK 1152
FA PLA+EG GSVFPV LP+++ RR FE+ +K+FDR L +N +VGEFW +IDA W+S WV FV+G++GPPGPISN L+ RE AA++A G + P L K K L+ + DYRA+HP+VWY+FREIY+ D P++CRWK D+Y EV R+ + E H KA+Y+LRRF +IK
Sbjct: 203 FAHPLATEGAGSVFPVDLPMNRSTDTRYGLCPATSLVPTRPSVRRGWEFTALSLVVPGVLSCYLPLGLAAXXXXXXXXXXXRRIFEIGFIKQFDR---------------LAINPNVGEFWMLIDAHWVSRWVAFVLGQAGPPGPISNDRLY-------REDAFAPTAAAAAAPQSVAYDVAFRREAPGPIRVGPTLSKTKFKADLQAISDYRAIHPVVWYIFREIYTTDGTPDICRWKLDLYAEEVSAMRRARILEPNHIKAIYQLRRFVARIK 455
BLAST of mRNA_Ecto-sp13_S_contig159.4329.1 vs. uniprot
Match: D7FUK5_ECTSI (DUSP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUK5_ECTSI) HSP 1 Score: 129 bits (324), Expect = 8.430e-30 Identity = 74/174 (42.53%), Postives = 100/174 (57.47%), Query Frame = 1
Query: 478 DRGRGIERWSSSSNRIMASSKVTASRR----FAQPLASEGHGSVFPVGLPLSKRRAFEVEIMKRFDRRVFRPSLVRVAGIPVLDVNTHVGEFWFIIDAIWMSAWVNFVMGKSGPPGPISNHNLFTRYTGNRRESMLVHHAA----SSARGVMASRPDLKLKEGLRKLKDYRAVH 975
D G + R S +R + +S +TA + FAQPLASEG GSVFP+ LP+S RR +EVE +K+FDR L +N ++GEFW +IDA W+S WV FV+G++GPPGPISN LFT + ++AA + RG K KE L+ + DYRA+H
Sbjct: 101 DWGGSVGRSSPVPSRFLGNSVITADAKATEIFAQPLASEGAGSVFPLDLPMSSRRVYEVEFIKQFDR---------------LAINPNIGEFWMLIDAHWVSRWVAFVLGQAGPPGPISNGRLFTEDAFSPMPRSGAYNAAFRRTAPTRGAPMPAEMSKFKEDLQAISDYRAIH 259
BLAST of mRNA_Ecto-sp13_S_contig159.4329.1 vs. uniprot
Match: A0A6H5K0W2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0W2_9PHAE) HSP 1 Score: 112 bits (279), Expect = 1.970e-24 Identity = 55/149 (36.91%), Postives = 83/149 (55.70%), Query Frame = 1
Query: 712 LDVNTHVGEFWFIIDAIWMSAWV--NFVMGKSGPPGPISNHNLFTRYTGNRRESMLVHHAASSARGVMASRPDLKLKEGLRKLKDYRAVHPLVWYLFREIYSADDAPELCRWKADIYLAEVQITRKLKCCEEAHTKAVYELRRFSTKIK 1152
L +N ++GEFW +IDA W+S + + + P + N R A+ RGV K KE L+ + DYRA+HP+VWY+FREIY+ D P++CRWK ++Y EV R+ + + TKA+++LRRF+ +IK
Sbjct: 12 LAINPNIGEFWMLIDAHWVSRLFREDALSPTAAAAPPSAGFNAAFR-------------RAAPTRGVPLPAEMSKFKEDLQAISDYRAIHPVVWYIFREIYTTDGTPDICRWKLEVYAEEVAAMRRTRILGPSQTKAIHQLRRFAARIK 147
BLAST of mRNA_Ecto-sp13_S_contig159.4329.1 vs. uniprot
Match: A0A8J6B3G2_9EUKA (DUSP domain n=1 Tax=Carpediemonas membranifera TaxID=201153 RepID=A0A8J6B3G2_9EUKA) HSP 1 Score: 64.3 bits (155), Expect = 7.270e-7 Identity = 45/123 (36.59%), Postives = 56/123 (45.53%), Query Frame = 1
Query: 721 NTHVGEFWFIIDAIWMSAWVNFVM--GKSGPPGPISNHNLFTRYTGNRRESMLVHHAASSARGVMASRPDLKLKEGLRKLKDYRAVHPLVWYLFREIYSADDAPELCRWKADIYLAEVQITRK 1083
+T + W++ID W++ W FV K+ PPGPISN L R++ A RP GLRKL DYR VHP VW F IY P + R K DIY + I K
Sbjct: 548 DTVFSDTWYLIDERWLALWREFVARDSKADPPGPISNDTLL-------RDN--------------APRP------GLRKLFDYRGVHPRVWSHFHRIYGG--GPVIRRSKIDIYCEDSGIGLK 641 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig159.4329.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig159.4329.1 >prot_Ecto-sp13_S_contig159.4329.1 ID=prot_Ecto-sp13_S_contig159.4329.1|Name=mRNA_Ecto-sp13_S_contig159.4329.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=313bp MATVFGESGPTNVEVLNHPTRRKSKGAAGPPGPSRRMSADSEAVAAEAGDback to top mRNA from alignment at Ecto-sp13_S_contig159:29125..34288- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig159.4329.1 ID=mRNA_Ecto-sp13_S_contig159.4329.1|Name=mRNA_Ecto-sp13_S_contig159.4329.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5164bp|location=Sequence derived from alignment at Ecto-sp13_S_contig159:29125..34288- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig159:29125..34288- >mRNA_Ecto-sp13_S_contig159.4329.1 ID=mRNA_Ecto-sp13_S_contig159.4329.1|Name=mRNA_Ecto-sp13_S_contig159.4329.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=939bp|location=Sequence derived from alignment at Ecto-sp13_S_contig159:29125..34288- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |