mRNA_Ecto-sp13_S_contig15899.4326.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15899.4326.1
Unique NamemRNA_Ecto-sp13_S_contig15899.4326.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15899.4326.1 vs. uniprot
Match: D7FZX7_ECTSI (Agmatinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZX7_ECTSI)

HSP 1 Score: 172 bits (435), Expect = 2.090e-50
Identity = 88/97 (90.72%), Postives = 90/97 (92.78%), Query Frame = 1 
Query:    1 MSSSSSQLVMNTCADAAPAGACCNIMGNGKAAKGESEWEGVKGTASTGAPAFDGAVGGETTRVVSETGKIGQPDPHVYPRYCGFSTYARLPSIHEAS 291
            MSSSS+QLVMNT ADAAPAGACCN MGNGKAAKG SE EGVKGTAS GAPAFDGAVGGETTRVVSE GK+GQPDPHVYPRYCGFSTYARLPSIHE S
Sbjct:    1 MSSSSTQLVMNTSADAAPAGACCNGMGNGKAAKGASESEGVKGTASAGAPAFDGAVGGETTRVVSEAGKVGQPDPHVYPRYCGFSTYARLPSIHEVS 97
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15899.4326.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FZX7_ECTSI2.090e-5090.72Agmatinase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15899contigEcto-sp13_S_contig15899:366..1592 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score173.3
Seed ortholog evalue5.4e-41
Seed eggNOG ortholog2880.D7FZX7
Model size291
KEGG rclassRC00024,RC00329
KEGG koko:K01480
KEGG ReactionR01157
KEGG Pathwayko00330,ko01100,map00330,map01100
KEGG ModuleM00133
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005488,GO:0006082,GO:0006520,GO:0006525,GO:0006576,GO:0006595,GO:0006596,GO:0006807,GO:0008150,GO:0008152,GO:0008783,GO:0009058,GO:0009064,GO:0009308,GO:0009309,GO:0009445,GO:0009446,GO:0009987,GO:0016787,GO:0016810,GO:0016813,GO:0019627,GO:0019752,GO:0030145,GO:0033388,GO:0034641,GO:0042401,GO:0043167,GO:0043169,GO:0043436,GO:0043603,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046872,GO:0046914,GO:0071704,GO:0071941,GO:0097164,GO:1901564,GO:1901566,GO:1901576,GO:1901605
Exons2
EggNOG free text desc.agmatinase activity
EggNOG OGsCOG0010@1,KOG2964@2759
Ec32 ortholog descriptionagmatinase
Ec32 orthologEc-22_003700.1
EC3.5.3.11
Cds size291
COG Functional cat.E
BiGG ReactioniB21_1397.B21_02730,iECB_1328.ECB_02767,iECD_1391.ECD_02767
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462839.5014536-CDS-Ecto-sp13_S_contig15899:365..4721681462839.5014536-CDS-Ecto-sp13_S_contig15899:365..472Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15899 366..472 -
1681462839.5176196-CDS-Ecto-sp13_S_contig15899:1408..15921681462839.5176196-CDS-Ecto-sp13_S_contig15899:1408..1592Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15899 1409..1592 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15899.4326.1prot_Ecto-sp13_S_contig15899.4326.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15899 366..1592 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15899.4326.1

>prot_Ecto-sp13_S_contig15899.4326.1 ID=prot_Ecto-sp13_S_contig15899.4326.1|Name=mRNA_Ecto-sp13_S_contig15899.4326.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=97bp
MSSSSSQLVMNTCADAAPAGACCNIMGNGKAAKGESEWEGVKGTASTGAP
AFDGAVGGETTRVVSETGKIGQPDPHVYPRYCGFSTYARLPSIHEAS
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mRNA from alignment at Ecto-sp13_S_contig15899:366..1592-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15899.4326.1 ID=mRNA_Ecto-sp13_S_contig15899.4326.1|Name=mRNA_Ecto-sp13_S_contig15899.4326.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1227bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15899:366..1592- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCCTCCTCTTCTTCCCAGCTGGTGATGAATACTTGCGCGGATGCCGC
GCCTGCTGGCGCGTGCTGCAACATCATGGGGAATGGCAAGGCGGCCAAGG
GTGAGAGTGAGTGGGAGGGAGTCAAGGGAACGGCCTCTACTGGAGCTCCG
GCATTTGACGGTGCGGTTGGCGGCGAAACAACACGTGAGTGTCGGTGTGG
CTGGCGACGCGGTCGACGTGGACTCTGTAATGTGGTTGTCGTGTCTGCTT
CAAGGGGCCGGATCCTGAGAACATGGCGTCGCCGGTACCGCTCAGCGCAA
GGCGAAAATTAAACCGAAATGTCGACAACGTGTTTTAGATCGTCTTCCGG
GCTAGGATCCTCGAGTTTACGCCTCCGGGGTTCGAAGCACGGCTGCAGAC
AGGGCGTCCCAACCAACTTCAAGTGGCATCTAGAACATGGTTGGTGTAAG
CAGGCTTGCTGTTAAATCCAACGCGCCATTTTCTCGTATACAAGGAGAGG
AGGTTCAACTGCTGTATTTGTATAAGTAGTTGTTCCAGGTCGGACCCTTT
TGGTGCCGCAGAAGAGTGAAAACAGTTCTCATCGCACCTATGCATACCTC
TATCGCCACGTATCATAGCTCCGCCTTTCTTTTCCCTCTGAGGAAGAACC
TCACTGACGCTCTCTTACTCTCGGACCTTCAATCCGATCACACCGGCAAG
TAGTCGATAGTTTTGTTTAACCACATGTCACAGAACGGCTGCAGCATCGC
GACGGAGAACCACCCCAGTGCGTGTGCAGTAACAGAAGGTTACCTCTGTC
CATGCCATCGCGCGGAAACAGGAAAGCCAAGTTGGCCGGAAGGCTGAGGA
GCCCCAACGGATGTCCGCCAAACCAGAGCCCTGAAGCTATCTTGGCCATT
GTAAATATCTAAATTTAGCCTTGCCGACGGCTCCGAAAAGTCCCGGGACC
ATTTCAGAACGGTAATGTTTTATCTACTGCATGCAACGTGTGTTCGTGTT
TTGGCGTTCCTCTGTTAACATACGTATGTATGTGCTGATTGGAGTGCTCG
TCACAGACGGTTTCGGTTTCCCTCGCCGTATATCCGCCCGCCCGACGGCC
GTGCGACACACGACGAGCAGGGGTGGTGTCAGAGACCGGCAAGATTGGAC
AGCCGGACCCCCACGTGTACCCCCGCTACTGCGGGTTCTCGACGTACGCT
CGCCTCCCGAGCATCCACGAGGCGAGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15899:366..1592-

>mRNA_Ecto-sp13_S_contig15899.4326.1 ID=mRNA_Ecto-sp13_S_contig15899.4326.1|Name=mRNA_Ecto-sp13_S_contig15899.4326.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=291bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15899:366..1592- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCCTCCTCTTCTTCCCAGCTGGTGATGAATACTTGCGCGGATGCCGC
GCCTGCTGGCGCGTGCTGCAACATCATGGGGAATGGCAAGGCGGCCAAGG
GTGAGAGTGAGTGGGAGGGAGTCAAGGGAACGGCCTCTACTGGAGCTCCG
GCATTTGACGGTGCGGTTGGCGGCGAAACAACACGGGTGGTGTCAGAGAC
CGGCAAGATTGGACAGCCGGACCCCCACGTGTACCCCCGCTACTGCGGGT
TCTCGACGTACGCTCGCCTCCCGAGCATCCACGAGGCGAGC
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