prot_Ecto-sp13_S_contig1589.4323.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig1589.4323.1
Unique Nameprot_Ecto-sp13_S_contig1589.4323.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length157
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1589.4323.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 68..91
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..23
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 57..67
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 138..156
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 92..116
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 24..56
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 117..137
NoneNo IPR availableTMHMMTMhelixcoord: 21..38
NoneNo IPR availableTMHMMTMhelixcoord: 115..137
NoneNo IPR availableTMHMMTMhelixcoord: 68..90
NoneNo IPR availableTMHMMTMhelixcoord: 42..59

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1589contigEcto-sp13_S_contig1589:3648..12448 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1589.4323.1mRNA_Ecto-sp13_S_contig1589.4323.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig1589 3648..12699 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig1589.4323.1 ID=prot_Ecto-sp13_S_contig1589.4323.1|Name=mRNA_Ecto-sp13_S_contig1589.4323.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=157bp
QAGGGRCCSVPSAASRDFKSIRRAAIAVLVIHVVAVSTSGYLQVPGSLIG
IIVGGIGLCQKSRCSYRVACVVITVGLFLDLCHLASLLWFLSPIQDDSSD
DRVYAGYGTDISSAQEIALVLPVALGALSFLAVGAVFTREAFRQWRRSGT
HDEFPV*
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